Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:28020422-30460425

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139 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pld1 3 27938695 to 28133362 194667 + protein coding gene phospholipase D1
Tssr28640 3 28034668 to 28034672 4 + TSS region transcription start site region 28640
Tssr28641 3 28052642 to 28052643 1 + TSS region transcription start site region 28641
Tssr32863 3 28157162 to 28157165 3 - TSS region transcription start site region 32863
Tssr32864 3 28164744 to 28164748 4 - TSS region transcription start site region 32864
Gm42196 3 28176512 to 28211377 34865 + lincRNA gene predicted gene, 42196
Cpgi13024 3 28226309 to 28226480 171 CpG island CpG island 13024
Tssr28642 3 28245449 to 28245459 10 + TSS region transcription start site region 28642
Gm37098 3 28245523 to 28245766 243 + pseudogene predicted gene, 37098
Cpgi13025 3 28262376 to 28264023 1647 CpG island CpG island 13025
Tssr28643 3 28263205 to 28263214 9 + TSS region transcription start site region 28643
Tnik 3 28263214 to 28672457 409243 + protein coding gene TRAF2 and NCK interacting kinase
Tssr28644 3 28263231 to 28263333 102 + TSS region transcription start site region 28644
Tssr28645 3 28263355 to 28263386 31 + TSS region transcription start site region 28645
Tssr28646 3 28263396 to 28263413 17 + TSS region transcription start site region 28646
Tssr28647 3 28263423 to 28263428 5 + TSS region transcription start site region 28647
Tssr28648 3 28263432 to 28263437 5 + TSS region transcription start site region 28648
Tssr28649 3 28263567 to 28263577 10 + TSS region transcription start site region 28649
Tssr32865 3 28264235 to 28264249 14 - TSS region transcription start site region 32865
Tssr32866 3 28265230 to 28265247 17 - TSS region transcription start site region 32866
AA589472 3 28269281 to 28269829 548 unclassified gene expressed sequence AA589472
Tssr28650 3 28313305 to 28313309 4 + TSS region transcription start site region 28650
Gm37537 3 28324357 to 28326094 1737 + unclassified gene predicted gene, 37537
Mir466q 3 28419943 to 28420018 75 + miRNA gene microRNA 466q
Tssr847 3 28431529 to 28431532 3 + TSS region transcription start site region 847
Tssr848 3 28463679 to 28463682 3 + TSS region transcription start site region 848
Tssr28651 3 28559155 to 28559160 5 + TSS region transcription start site region 28651
D3Mit55 3 28576304 to 28576442 138 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 55
Eae20 3 28576304 to 28576442 138 QTL experimental allergic encephalomyelitis susceptibility 20
Cpgi13026 3 28577407 to 28577563 156 CpG island CpG island 13026
Tssr849 3 28581185 to 28581192 7 + TSS region transcription start site region 849
D3Mit325 3 28631047 to 28631155 108 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-325
Cpgi13027 3 28691355 to 28691521 166 CpG island CpG island 13027
Tssr28652 3 28695706 to 28695741 35 + TSS region transcription start site region 28652
Tssr28653 3 28697901 to 28697912 11 + TSS region transcription start site region 28653
Slc2a2 3 28697903 to 28728361 30458 + protein coding gene solute carrier family 2 (facilitated glucose transporter), member 2
Tssr28654 3 28697946 to 28697980 34 + TSS region transcription start site region 28654
D3Mit268 3 28718080 to 28718182 102 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 268
Tssr28655 3 28721506 to 28721547 41 + TSS region transcription start site region 28655
Tssr28656 3 28727966 to 28728016 50 + TSS region transcription start site region 28656
Tssr28657 3 28728829 to 28728841 12 + TSS region transcription start site region 28657
Tssr28658 3 28729087 to 28729098 11 + TSS region transcription start site region 28658
1700112D23Rik 3 28738778 to 28772746 33968 - antisense lncRNA gene RIKEN cDNA 1700112D23 gene
Gm6505 3 28764713 to 28765360 647 - pseudogene predicted pseudogene 6505
Tssr32867 3 28765366 to 28765389 23 - TSS region transcription start site region 32867
Cpgi13028 3 28780828 to 28782022 1194 CpG island CpG island 13028
Tssr32868 3 28781103 to 28781130 27 - TSS region transcription start site region 32868
Eif5a2 3 28781276 to 28798846 17570 + protein coding gene eukaryotic translation initiation factor 5A2
Tssr28659 3 28781305 to 28781344 39 + TSS region transcription start site region 28659
Tssr28660 3 28781345 to 28781374 29 + TSS region transcription start site region 28660
Gm32950 3 28802804 to 28805336 2532 - lincRNA gene predicted gene, 32950
Cpgi13029 3 28805203 to 28806043 840 CpG island CpG island 13029
Tssr32869 3 28805328 to 28805360 32 - TSS region transcription start site region 32869
Rpl22l1 3 28805444 to 28807424 1980 + protein coding gene ribosomal protein L22 like 1
Tssr28661 3 28805498 to 28805521 23 + TSS region transcription start site region 28661
Gm33051 3 28810187 to 28816183 5996 - antisense lncRNA gene predicted gene, 33051
Tssr32870 3 28816243 to 28816254 11 - TSS region transcription start site region 32870
Tssr32871 3 28816264 to 28816275 11 - TSS region transcription start site region 32871
D3Mit369 3 28834409 to 28834519 110 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-369
Gm37867 3 28852033 to 28854257 2224 - lincRNA gene predicted gene, 37867
Gm37924 3 28879812 to 28883458 3646 + unclassified gene predicted gene, 37924
Gm33102 3 28883456 to 28897284 13828 - lncRNA gene predicted gene, 33102
Gm1527 3 28892617 to 28926724 34107 + protein coding gene predicted gene 1527
Tssr28662 3 28892617 to 28892619 2 + TSS region transcription start site region 28662
Tssr28663 3 28893723 to 28893727 4 + TSS region transcription start site region 28663
Tssr32872 3 28897157 to 28897171 14 - TSS region transcription start site region 32872
Tssr850 3 28956371 to 28956378 7 + TSS region transcription start site region 850
Tssr28664 3 28986639 to 28986642 3 + TSS region transcription start site region 28664
Gm33154 3 29043768 to 29045547 1779 - lncRNA gene predicted gene, 33154
D3Mit93 3 29063468 to 29063630 162 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 93
Egfem1 3 29082023 to 29691209 609186 + protein coding gene EGF-like and EMI domain containing 1
Cpgi13030 3 29082253 to 29083130 877 CpG island CpG island 13030
Tssr28665 3 29082539 to 29082590 51 + TSS region transcription start site region 28665
D3Mit118 3 29083300 to 29083442 142 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 118
Tssr28666 3 29109801 to 29109807 6 + TSS region transcription start site region 28666
Tssr28667 3 29154218 to 29154226 8 + TSS region transcription start site region 28667
Gm38029 3 29174838 to 29176927 2089 + unclassified gene predicted gene, 38029
Tssr28668 3 29198768 to 29198770 2 + TSS region transcription start site region 28668
D230021J17Rik 3 29209341 to 29211977 2636 unclassified gene RIKEN cDNA D230021J17 gene
Gm37965 3 29219887 to 29221248 1361 + unclassified gene predicted gene, 37965
Tssr28669 3 29235927 to 29235931 4 + TSS region transcription start site region 28669
Tssr28670 3 29240422 to 29240425 3 + TSS region transcription start site region 28670
Tssr28671 3 29260999 to 29261003 4 + TSS region transcription start site region 28671
AA516838 3 29266280 to 29266842 562 unclassified gene expressed sequence AA516838
Tssr851 3 29268526 to 29268529 3 + TSS region transcription start site region 851
Tssr28672 3 29314725 to 29314734 9 + TSS region transcription start site region 28672
Tssr28673 3 29377856 to 29377860 4 + TSS region transcription start site region 28673
Mir551b 3 29416823 to 29416920 97 + miRNA gene microRNA 551b
Tssr28674 3 29467899 to 29467904 5 + TSS region transcription start site region 28674
Tssr28675 3 29541893 to 29541895 2 + TSS region transcription start site region 28675
Mir21b 3 29636744 to 29636851 107 + miRNA gene microRNA 21b
Gm42197 3 29662513 to 29696560 34047 - lncRNA gene predicted gene, 42197
Tssr28676 3 29732830 to 29732834 4 + TSS region transcription start site region 28676
Gm37557 3 29771284 to 29771422 138 + pseudogene predicted gene, 37557
Gm33206 3 29773466 to 29893177 119711 - lincRNA gene predicted gene, 33206
Tssr28677 3 29891008 to 29891031 23 + TSS region transcription start site region 28677
Mannr 3 29891017 to 29924191 33174 + lincRNA gene Mecom adjacent non-protein coding RNA
Gm37281 3 29926536 to 29926974 438 + pseudogene predicted gene, 37281
Mecom 3 29951296 to 30509783 558487 - protein coding gene MDS1 and EVI1 complex locus
Cpgi13031 3 29996112 to 29996475 363 CpG island CpG island 13031
Tssr28678 3 30012198 to 30012209 11 + TSS region transcription start site region 28678
Cpgi13032 3 30012256 to 30012593 337 CpG island CpG island 13032
Mecomos 3 30012379 to 30054808 42429 + antisense lncRNA gene MDS1 and EVI1 complex locus, opposite strand
Tssr32873 3 30012886 to 30012911 25 - TSS region transcription start site region 32873
Tssr32874 3 30013004 to 30013020 16 - TSS region transcription start site region 32874
Tssr32875 3 30013025 to 30013036 11 - TSS region transcription start site region 32875
Tssr32876 3 30013136 to 30013149 13 - TSS region transcription start site region 32876
Tssr32877 3 30013157 to 30013174 17 - TSS region transcription start site region 32877
Tssr32878 3 30013232 to 30013246 14 - TSS region transcription start site region 32878
Tssr32879 3 30013247 to 30013260 13 - TSS region transcription start site region 32879
Tssr32880 3 30013327 to 30013340 13 - TSS region transcription start site region 32880
D3Mit46.3 3 30013333 to 30013475 142 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 46.3
Tssr32881 3 30013349 to 30013369 20 - TSS region transcription start site region 32881
Tssr32882 3 30013388 to 30013399 11 - TSS region transcription start site region 32882
D3Mit46 3 30013439 to 30013604 165 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 46
D3Mit46.1 3 30013610 to 30013725 115 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 46.1
Tssr32883 3 30014387 to 30014390 3 - TSS region transcription start site region 32883
Tssr32884 3 30048207 to 30048219 12 - TSS region transcription start site region 32884
Tssr32885 3 30048238 to 30048250 12 - TSS region transcription start site region 32885
Cpgi13033 3 30106508 to 30106739 231 CpG island CpG island 13033
Tssr32886 3 30107695 to 30107700 5 - TSS region transcription start site region 32886
Tssr32887 3 30140407 to 30140433 26 - TSS region transcription start site region 32887
Gm38066 3 30160253 to 30161886 1633 - unclassified gene predicted gene, 38066
Tssr32888 3 30190095 to 30190114 19 - TSS region transcription start site region 32888
Tssr32889 3 30190362 to 30190376 14 - TSS region transcription start site region 32889
Tssr32890 3 30211322 to 30211327 5 - TSS region transcription start site region 32890
Tssr32891 3 30220427 to 30220431 4 - TSS region transcription start site region 32891
Gm38197 3 30225573 to 30227694 2121 - unclassified gene predicted gene, 38197
D3Mit271 3 30225831 to 30225935 104 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 271
Cpgi13034 3 30266656 to 30266911 255 CpG island CpG island 13034
Gm10258 3 30267825 to 30269947 2122 - unclassified non-coding RNA gene predicted gene 10258
Gm38362 3 30272322 to 30274385 2063 - unclassified gene predicted gene, 38362
9530010C24Rik 3 30349980 to 30351324 1344 unclassified gene RIKEN cDNA 9530010C24 gene
Tssr32892 3 30358344 to 30358345 1 - TSS region transcription start site region 32892
Tssr32893 3 30386395 to 30386408 13 - TSS region transcription start site region 32893
Lscc2 3 30393206 to 30393398 192 QTL lung squamous cell carcinoma 2
D3Mit178 3 30393206 to 30393398 192 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 178
Mos3 3 30393206 to 50684998 20291792 heritable phenotypic marker modifier of Sox10 3
Orgwq4 3 147599053 to 30013439 -117585614 QTL organ weight QTL 4