Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:27509668-28559672

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fndc3b 3 27416162 to 27711307 295145 - protein coding gene fibronectin type III domain containing 3B
Gm43344 3 27546641 to 27547869 1228 + unclassified gene predicted gene 43344
Tssr32850 3 27556153 to 27556168 15 - TSS region transcription start site region 32850
Tssr28631 3 27557396 to 27557410 14 + TSS region transcription start site region 28631
Mir3092 3 27584900 to 27584995 95 - miRNA gene microRNA 3092
Tssr32851 3 27605702 to 27605717 15 - TSS region transcription start site region 32851
Tssr28632 3 27617334 to 27617368 34 + TSS region transcription start site region 28632
D3Mit366 3 27656036 to 27656303 267 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-366
Tssr32852 3 27656866 to 27656878 12 - TSS region transcription start site region 32852
Tssr28633 3 27689675 to 27689680 5 + TSS region transcription start site region 28633
Tssr32853 3 27691545 to 27691556 11 - TSS region transcription start site region 32853
Tssr32854 3 27691607 to 27691633 26 - TSS region transcription start site region 32854
Tssr32855 3 27695861 to 27695894 33 - TSS region transcription start site region 32855
Cpgi13022 3 27709799 to 27711553 1754 CpG island CpG island 13022
Tssr32856 3 27710373 to 27710388 15 - TSS region transcription start site region 32856
Tssr32857 3 27710413 to 27710467 54 - TSS region transcription start site region 32857
Tssr32858 3 27711233 to 27711248 15 - TSS region transcription start site region 32858
Tssr32859 3 27711255 to 27711338 83 - TSS region transcription start site region 32859
Gm42194 3 27777858 to 27840919 63061 + lncRNA gene predicted gene, 42194
Gm32795 3 27797877 to 27815382 17505 - lncRNA gene predicted gene, 32795
Tssr32860 3 27863456 to 27863471 15 - TSS region transcription start site region 32860
Tmem212 3 27866066 to 27896368 30302 - protein coding gene transmembrane protein 212
Gm26040 3 27868113 to 27868273 160 + snoRNA gene predicted gene, 26040
Tssr32861 3 27896347 to 27896356 9 - TSS region transcription start site region 32861
Tssr32862 3 27896360 to 27896390 30 - TSS region transcription start site region 32862
Gm42195 3 27896803 to 27900234 3431 - lncRNA gene predicted gene, 42195
Cpgi13023 3 27938315 to 27939308 993 CpG island CpG island 13023
Tssr28634 3 27938609 to 27938634 25 + TSS region transcription start site region 28634
Tssr28635 3 27938638 to 27938679 41 + TSS region transcription start site region 28635
Pld1 3 27938695 to 28133362 194667 + protein coding gene phospholipase D1
Tssr28636 3 27961811 to 27961816 5 + TSS region transcription start site region 28636
Tssr28637 3 27984145 to 27984200 55 + TSS region transcription start site region 28637
Tssr28638 3 27984272 to 27984290 18 + TSS region transcription start site region 28638
Tssr28639 3 27984635 to 27984639 4 + TSS region transcription start site region 28639
Tssr28640 3 28034668 to 28034672 4 + TSS region transcription start site region 28640
Tssr28641 3 28052642 to 28052643 1 + TSS region transcription start site region 28641
Tssr32863 3 28157162 to 28157165 3 - TSS region transcription start site region 32863
Tssr32864 3 28164744 to 28164748 4 - TSS region transcription start site region 32864
Gm42196 3 28176512 to 28211377 34865 + lincRNA gene predicted gene, 42196
Cpgi13024 3 28226309 to 28226480 171 CpG island CpG island 13024
Tssr28642 3 28245449 to 28245459 10 + TSS region transcription start site region 28642
Gm37098 3 28245523 to 28245766 243 + pseudogene predicted gene, 37098
Cpgi13025 3 28262376 to 28264023 1647 CpG island CpG island 13025
Tssr28643 3 28263205 to 28263214 9 + TSS region transcription start site region 28643
Tnik 3 28263214 to 28672457 409243 + protein coding gene TRAF2 and NCK interacting kinase
Tssr28644 3 28263231 to 28263333 102 + TSS region transcription start site region 28644
Tssr28645 3 28263355 to 28263386 31 + TSS region transcription start site region 28645
Tssr28646 3 28263396 to 28263413 17 + TSS region transcription start site region 28646
Tssr28647 3 28263423 to 28263428 5 + TSS region transcription start site region 28647
Tssr28648 3 28263432 to 28263437 5 + TSS region transcription start site region 28648
Tssr28649 3 28263567 to 28263577 10 + TSS region transcription start site region 28649
Tssr32865 3 28264235 to 28264249 14 - TSS region transcription start site region 32865
Tssr32866 3 28265230 to 28265247 17 - TSS region transcription start site region 32866
AA589472 3 28269281 to 28269829 548 unclassified gene expressed sequence AA589472
Tssr28650 3 28313305 to 28313309 4 + TSS region transcription start site region 28650
Gm37537 3 28324357 to 28326094 1737 + unclassified gene predicted gene, 37537
Mir466q 3 28419943 to 28420018 75 + miRNA gene microRNA 466q
Tssr847 3 28431529 to 28431532 3 + TSS region transcription start site region 847
Tssr848 3 28463679 to 28463682 3 + TSS region transcription start site region 848
Tssr28651 3 28559155 to 28559160 5 + TSS region transcription start site region 28651