Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:27276162-27851307

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm42192 3 27260329 to 27284461 24132 + lncRNA gene predicted gene, 42192
Gm37191 3 27278060 to 27278447 387 + pseudogene predicted gene, 37191
Cpgi13020 3 27283487 to 27283675 188 CpG island CpG island 13020
Gm43345 3 27308406 to 27308674 268 - pseudogene predicted gene 43345
Tssr28624 3 27316896 to 27316927 31 + TSS region transcription start site region 28624
Tssr32848 3 27316980 to 27317000 20 - TSS region transcription start site region 32848
Tssr28625 3 27317019 to 27317026 7 + TSS region transcription start site region 28625
Tssr28626 3 27317059 to 27317084 25 + TSS region transcription start site region 28626
Tnfsf10 3 27317077 to 27339665 22588 + protein coding gene tumor necrosis factor (ligand) superfamily, member 10
Tssr846 3 27317086 to 27317097 11 + TSS region transcription start site region 846
Tssr28627 3 27317106 to 27317117 11 + TSS region transcription start site region 28627
Cpgi13021 3 27371143 to 27372660 1517 CpG island CpG island 13021
Ghsr 3 27371351 to 27378010 6659 + protein coding gene growth hormone secretagogue receptor
C430049A07Rik 3 27415105 to 27416151 1046 unclassified gene RIKEN cDNA C430049A07 gene
Fndc3b 3 27416162 to 27711307 295145 - protein coding gene fibronectin type III domain containing 3B
Tssr32849 3 27439076 to 27439084 8 - TSS region transcription start site region 32849
Gm42193 3 27441655 to 27444111 2456 + lncRNA gene predicted gene, 42193
Gm32738 3 27482284 to 27484243 1959 + lncRNA gene predicted gene, 32738
Tssr28628 3 27482493 to 27482504 11 + TSS region transcription start site region 28628
Tssr28629 3 27482511 to 27482522 11 + TSS region transcription start site region 28629
Tssr28630 3 27482528 to 27482533 5 + TSS region transcription start site region 28630
D3Ertd452e 3 27504693 to 27504919 226 DNA segment DNA segment, Chr 3, ERATO Doi 452, expressed
Gm43344 3 27546641 to 27547869 1228 + unclassified gene predicted gene 43344
Tssr32850 3 27556153 to 27556168 15 - TSS region transcription start site region 32850
Tssr28631 3 27557396 to 27557410 14 + TSS region transcription start site region 28631
Mir3092 3 27584900 to 27584995 95 - miRNA gene microRNA 3092
Tssr32851 3 27605702 to 27605717 15 - TSS region transcription start site region 32851
Tssr28632 3 27617334 to 27617368 34 + TSS region transcription start site region 28632
D3Mit366 3 27656036 to 27656303 267 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-366
Tssr32852 3 27656866 to 27656878 12 - TSS region transcription start site region 32852
Tssr28633 3 27689675 to 27689680 5 + TSS region transcription start site region 28633
Tssr32853 3 27691545 to 27691556 11 - TSS region transcription start site region 32853
Tssr32854 3 27691607 to 27691633 26 - TSS region transcription start site region 32854
Tssr32855 3 27695861 to 27695894 33 - TSS region transcription start site region 32855
Cpgi13022 3 27709799 to 27711553 1754 CpG island CpG island 13022
Tssr32856 3 27710373 to 27710388 15 - TSS region transcription start site region 32856
Tssr32857 3 27710413 to 27710467 54 - TSS region transcription start site region 32857
Tssr32858 3 27711233 to 27711248 15 - TSS region transcription start site region 32858
Tssr32859 3 27711255 to 27711338 83 - TSS region transcription start site region 32859
Gm42194 3 27777858 to 27840919 63061 + lncRNA gene predicted gene, 42194
Gm32795 3 27797877 to 27815382 17505 - lncRNA gene predicted gene, 32795