Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:27258609-28618634

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr32846 3 27258692 to 27258708 16 - TSS region transcription start site region 32846
Tssr32847 3 27258709 to 27258736 27 - TSS region transcription start site region 32847
Gm42192 3 27260329 to 27284461 24132 + lncRNA gene predicted gene, 42192
Gm37191 3 27278060 to 27278447 387 + pseudogene predicted gene, 37191
Cpgi13020 3 27283487 to 27283675 188 CpG island CpG island 13020
Gm43345 3 27308406 to 27308674 268 - pseudogene predicted gene 43345
Tssr28624 3 27316896 to 27316927 31 + TSS region transcription start site region 28624
Tssr32848 3 27316980 to 27317000 20 - TSS region transcription start site region 32848
Tssr28625 3 27317019 to 27317026 7 + TSS region transcription start site region 28625
Tssr28626 3 27317059 to 27317084 25 + TSS region transcription start site region 28626
Tnfsf10 3 27317077 to 27339665 22588 + protein coding gene tumor necrosis factor (ligand) superfamily, member 10
Tssr846 3 27317086 to 27317097 11 + TSS region transcription start site region 846
Tssr28627 3 27317106 to 27317117 11 + TSS region transcription start site region 28627
Cpgi13021 3 27371143 to 27372660 1517 CpG island CpG island 13021
Ghsr 3 27371351 to 27378010 6659 + protein coding gene growth hormone secretagogue receptor
C430049A07Rik 3 27415105 to 27416151 1046 unclassified gene RIKEN cDNA C430049A07 gene
Fndc3b 3 27416162 to 27711307 295145 - protein coding gene fibronectin type III domain containing 3B
Tssr32849 3 27439076 to 27439084 8 - TSS region transcription start site region 32849
Gm42193 3 27441655 to 27444111 2456 + lncRNA gene predicted gene, 42193
Gm32738 3 27482284 to 27484243 1959 + lncRNA gene predicted gene, 32738
Tssr28628 3 27482493 to 27482504 11 + TSS region transcription start site region 28628
Tssr28629 3 27482511 to 27482522 11 + TSS region transcription start site region 28629
Tssr28630 3 27482528 to 27482533 5 + TSS region transcription start site region 28630
D3Ertd452e 3 27504693 to 27504919 226 DNA segment DNA segment, Chr 3, ERATO Doi 452, expressed
Gm43344 3 27546641 to 27547869 1228 + unclassified gene predicted gene 43344
Tssr32850 3 27556153 to 27556168 15 - TSS region transcription start site region 32850
Tssr28631 3 27557396 to 27557410 14 + TSS region transcription start site region 28631
Mir3092 3 27584900 to 27584995 95 - miRNA gene microRNA 3092
Tssr32851 3 27605702 to 27605717 15 - TSS region transcription start site region 32851
Tssr28632 3 27617334 to 27617368 34 + TSS region transcription start site region 28632
D3Mit366 3 27656036 to 27656303 267 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-366
Tssr32852 3 27656866 to 27656878 12 - TSS region transcription start site region 32852
Tssr28633 3 27689675 to 27689680 5 + TSS region transcription start site region 28633
Tssr32853 3 27691545 to 27691556 11 - TSS region transcription start site region 32853
Tssr32854 3 27691607 to 27691633 26 - TSS region transcription start site region 32854
Tssr32855 3 27695861 to 27695894 33 - TSS region transcription start site region 32855
Cpgi13022 3 27709799 to 27711553 1754 CpG island CpG island 13022
Tssr32856 3 27710373 to 27710388 15 - TSS region transcription start site region 32856
Tssr32857 3 27710413 to 27710467 54 - TSS region transcription start site region 32857
Tssr32858 3 27711233 to 27711248 15 - TSS region transcription start site region 32858
Tssr32859 3 27711255 to 27711338 83 - TSS region transcription start site region 32859
Gm42194 3 27777858 to 27840919 63061 + lncRNA gene predicted gene, 42194
Gm32795 3 27797877 to 27815382 17505 - lncRNA gene predicted gene, 32795
Tssr32860 3 27863456 to 27863471 15 - TSS region transcription start site region 32860
Tmem212 3 27866066 to 27896368 30302 - protein coding gene transmembrane protein 212
Gm26040 3 27868113 to 27868273 160 + snoRNA gene predicted gene, 26040
Tssr32861 3 27896347 to 27896356 9 - TSS region transcription start site region 32861
Tssr32862 3 27896360 to 27896390 30 - TSS region transcription start site region 32862
Gm42195 3 27896803 to 27900234 3431 - lncRNA gene predicted gene, 42195
Cpgi13023 3 27938315 to 27939308 993 CpG island CpG island 13023
Tssr28634 3 27938609 to 27938634 25 + TSS region transcription start site region 28634
Tssr28635 3 27938638 to 27938679 41 + TSS region transcription start site region 28635
Pld1 3 27938695 to 28133362 194667 + protein coding gene phospholipase D1
Tssr28636 3 27961811 to 27961816 5 + TSS region transcription start site region 28636
Tssr28637 3 27984145 to 27984200 55 + TSS region transcription start site region 28637
Tssr28638 3 27984272 to 27984290 18 + TSS region transcription start site region 28638
Tssr28639 3 27984635 to 27984639 4 + TSS region transcription start site region 28639
Tssr28640 3 28034668 to 28034672 4 + TSS region transcription start site region 28640
Tssr28641 3 28052642 to 28052643 1 + TSS region transcription start site region 28641
Tssr32863 3 28157162 to 28157165 3 - TSS region transcription start site region 32863
Tssr32864 3 28164744 to 28164748 4 - TSS region transcription start site region 32864
Gm42196 3 28176512 to 28211377 34865 + lincRNA gene predicted gene, 42196
Cpgi13024 3 28226309 to 28226480 171 CpG island CpG island 13024
Tssr28642 3 28245449 to 28245459 10 + TSS region transcription start site region 28642
Gm37098 3 28245523 to 28245766 243 + pseudogene predicted gene, 37098
Cpgi13025 3 28262376 to 28264023 1647 CpG island CpG island 13025
Tssr28643 3 28263205 to 28263214 9 + TSS region transcription start site region 28643
Tnik 3 28263214 to 28672457 409243 + protein coding gene TRAF2 and NCK interacting kinase
Tssr28644 3 28263231 to 28263333 102 + TSS region transcription start site region 28644
Tssr28645 3 28263355 to 28263386 31 + TSS region transcription start site region 28645
Tssr28646 3 28263396 to 28263413 17 + TSS region transcription start site region 28646
Tssr28647 3 28263423 to 28263428 5 + TSS region transcription start site region 28647
Tssr28648 3 28263432 to 28263437 5 + TSS region transcription start site region 28648
Tssr28649 3 28263567 to 28263577 10 + TSS region transcription start site region 28649
Tssr32865 3 28264235 to 28264249 14 - TSS region transcription start site region 32865
Tssr32866 3 28265230 to 28265247 17 - TSS region transcription start site region 32866
AA589472 3 28269281 to 28269829 548 unclassified gene expressed sequence AA589472
Tssr28650 3 28313305 to 28313309 4 + TSS region transcription start site region 28650
Gm37537 3 28324357 to 28326094 1737 + unclassified gene predicted gene, 37537
Mir466q 3 28419943 to 28420018 75 + miRNA gene microRNA 466q
Tssr847 3 28431529 to 28431532 3 + TSS region transcription start site region 847
Tssr848 3 28463679 to 28463682 3 + TSS region transcription start site region 848
Tssr28651 3 28559155 to 28559160 5 + TSS region transcription start site region 28651
Eae20 3 28576304 to 28576442 138 QTL experimental allergic encephalomyelitis susceptibility 20
D3Mit55 3 28576304 to 28576442 138 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 55
Cpgi13026 3 28577407 to 28577563 156 CpG island CpG island 13026
Tssr849 3 28581185 to 28581192 7 + TSS region transcription start site region 849