Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:26840230-29690247

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198 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spata16 3 26637620 to 26983212 345592 + protein coding gene spermatogenesis associated 16
Gm32458 3 26850203 to 26879138 28935 - lncRNA gene predicted gene, 32458
D3Mit203 3 26936104 to 26936253 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 203
Cpgi13017 3 26936869 to 26937137 268 CpG island CpG island 13017
Gm37659 3 27012764 to 27012874 110 + pseudogene predicted gene, 37659
Tssr28599 3 27014412 to 27014416 4 + TSS region transcription start site region 28599
Gm44464 3 27026418 to 27026555 137 - miRNA gene predicted gene, 44464
Gm7558 3 27046789 to 27047953 1164 - pseudogene predicted gene 7558
Tssr28600 3 27064048 to 27064059 11 + TSS region transcription start site region 28600
Ect2 3 27097222 to 27153878 56656 - protein coding gene ect2 oncogene
Gm25152 3 27108982 to 27109095 113 + snoRNA gene predicted gene, 25152
Cpgi13018 3 27153403 to 27154207 804 CpG island CpG island 13018
Tssr32836 3 27153806 to 27153842 36 - TSS region transcription start site region 32836
Tssr32837 3 27153844 to 27153855 11 - TSS region transcription start site region 32837
Tssr32838 3 27153865 to 27153876 11 - TSS region transcription start site region 32838
Tssr28601 3 27154020 to 27154031 11 + TSS region transcription start site region 28601
1700125G22Rik 3 27154026 to 27157019 2993 + lincRNA gene RIKEN cDNA 1700125G22 gene
Tssr28602 3 27154032 to 27154060 28 + TSS region transcription start site region 28602
Cpgi13019 3 27182732 to 27183968 1236 CpG island CpG island 13019
Tssr28603 3 27182973 to 27182986 13 + TSS region transcription start site region 28603
Tssr28604 3 27182994 to 27183017 23 + TSS region transcription start site region 28604
Nceh1 3 27183004 to 27245266 62262 + protein coding gene neutral cholesterol ester hydrolase 1
Tssr28605 3 27183740 to 27183745 5 + TSS region transcription start site region 28605
Tssr28606 3 27183770 to 27183804 34 + TSS region transcription start site region 28606
Tssr28607 3 27188376 to 27188409 33 + TSS region transcription start site region 28607
Tssr28608 3 27188413 to 27188441 28 + TSS region transcription start site region 28608
Tssr28609 3 27188447 to 27188458 11 + TSS region transcription start site region 28609
Tssr32839 3 27191930 to 27191944 14 - TSS region transcription start site region 32839
Tssr32840 3 27191974 to 27191986 12 - TSS region transcription start site region 32840
Tssr28610 3 27192132 to 27192146 14 + TSS region transcription start site region 28610
Tssr32841 3 27194069 to 27194084 15 - TSS region transcription start site region 32841
Tssr32842 3 27194124 to 27194158 34 - TSS region transcription start site region 32842
Tssr32843 3 27194195 to 27194206 11 - TSS region transcription start site region 32843
Tssr28611 3 27194260 to 27194266 6 + TSS region transcription start site region 28611
Tssr28612 3 27194365 to 27194373 8 + TSS region transcription start site region 28612
Tssr28613 3 27194694 to 27194699 5 + TSS region transcription start site region 28613
D3Mit305 3 27198957 to 27199064 107 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 305
Tssr32844 3 27209835 to 27209839 4 - TSS region transcription start site region 32844
Tssr28614 3 27210464 to 27210479 15 + TSS region transcription start site region 28614
Tssr28615 3 27221137 to 27221141 4 + TSS region transcription start site region 28615
Tssr845 3 27222292 to 27222298 6 + TSS region transcription start site region 845
Tssr28616 3 27227290 to 27227302 12 + TSS region transcription start site region 28616
Tssr28617 3 27231502 to 27231522 20 + TSS region transcription start site region 28617
Tssr28618 3 27231537 to 27231554 17 + TSS region transcription start site region 28618
Tssr32845 3 27240568 to 27240573 5 - TSS region transcription start site region 32845
Tssr28619 3 27241421 to 27241432 11 + TSS region transcription start site region 28619
Tssr28620 3 27241547 to 27241564 17 + TSS region transcription start site region 28620
Tssr28621 3 27241577 to 27241615 38 + TSS region transcription start site region 28621
Tssr28622 3 27241620 to 27241665 45 + TSS region transcription start site region 28622
Tssr28623 3 27242783 to 27242794 11 + TSS region transcription start site region 28623
Tssr32846 3 27258692 to 27258708 16 - TSS region transcription start site region 32846
Tssr32847 3 27258709 to 27258736 27 - TSS region transcription start site region 32847
Gm42192 3 27260329 to 27284461 24132 + lncRNA gene predicted gene, 42192
Gm37191 3 27278060 to 27278447 387 + pseudogene predicted gene, 37191
Cpgi13020 3 27283487 to 27283675 188 CpG island CpG island 13020
Gm43345 3 27308406 to 27308674 268 - pseudogene predicted gene 43345
Tssr28624 3 27316896 to 27316927 31 + TSS region transcription start site region 28624
Tssr32848 3 27316980 to 27317000 20 - TSS region transcription start site region 32848
Tssr28625 3 27317019 to 27317026 7 + TSS region transcription start site region 28625
Tssr28626 3 27317059 to 27317084 25 + TSS region transcription start site region 28626
Tnfsf10 3 27317077 to 27339665 22588 + protein coding gene tumor necrosis factor (ligand) superfamily, member 10
Tssr846 3 27317086 to 27317097 11 + TSS region transcription start site region 846
Tssr28627 3 27317106 to 27317117 11 + TSS region transcription start site region 28627
Cpgi13021 3 27371143 to 27372660 1517 CpG island CpG island 13021
Ghsr 3 27371351 to 27378010 6659 + protein coding gene growth hormone secretagogue receptor
C430049A07Rik 3 27415105 to 27416151 1046 unclassified gene RIKEN cDNA C430049A07 gene
Fndc3b 3 27416162 to 27711307 295145 - protein coding gene fibronectin type III domain containing 3B
Tssr32849 3 27439076 to 27439084 8 - TSS region transcription start site region 32849
Gm42193 3 27441655 to 27444111 2456 + lncRNA gene predicted gene, 42193
Gm32738 3 27482284 to 27484243 1959 + lncRNA gene predicted gene, 32738
Tssr28628 3 27482493 to 27482504 11 + TSS region transcription start site region 28628
Tssr28629 3 27482511 to 27482522 11 + TSS region transcription start site region 28629
Tssr28630 3 27482528 to 27482533 5 + TSS region transcription start site region 28630
D3Ertd452e 3 27504693 to 27504919 226 DNA segment DNA segment, Chr 3, ERATO Doi 452, expressed
Gm43344 3 27546641 to 27547869 1228 + unclassified gene predicted gene 43344
Tssr32850 3 27556153 to 27556168 15 - TSS region transcription start site region 32850
Tssr28631 3 27557396 to 27557410 14 + TSS region transcription start site region 28631
Mir3092 3 27584900 to 27584995 95 - miRNA gene microRNA 3092
Tssr32851 3 27605702 to 27605717 15 - TSS region transcription start site region 32851
Tssr28632 3 27617334 to 27617368 34 + TSS region transcription start site region 28632
D3Mit366 3 27656036 to 27656303 267 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-366
Tssr32852 3 27656866 to 27656878 12 - TSS region transcription start site region 32852
Tssr28633 3 27689675 to 27689680 5 + TSS region transcription start site region 28633
Tssr32853 3 27691545 to 27691556 11 - TSS region transcription start site region 32853
Tssr32854 3 27691607 to 27691633 26 - TSS region transcription start site region 32854
Tssr32855 3 27695861 to 27695894 33 - TSS region transcription start site region 32855
Cpgi13022 3 27709799 to 27711553 1754 CpG island CpG island 13022
Tssr32856 3 27710373 to 27710388 15 - TSS region transcription start site region 32856
Tssr32857 3 27710413 to 27710467 54 - TSS region transcription start site region 32857
Tssr32858 3 27711233 to 27711248 15 - TSS region transcription start site region 32858
Tssr32859 3 27711255 to 27711338 83 - TSS region transcription start site region 32859
Gm42194 3 27777858 to 27840919 63061 + lncRNA gene predicted gene, 42194
Gm32795 3 27797877 to 27815382 17505 - lncRNA gene predicted gene, 32795
Tssr32860 3 27863456 to 27863471 15 - TSS region transcription start site region 32860
Tmem212 3 27866066 to 27896368 30302 - protein coding gene transmembrane protein 212
Gm26040 3 27868113 to 27868273 160 + snoRNA gene predicted gene, 26040
Tssr32861 3 27896347 to 27896356 9 - TSS region transcription start site region 32861
Tssr32862 3 27896360 to 27896390 30 - TSS region transcription start site region 32862
Gm42195 3 27896803 to 27900234 3431 - lncRNA gene predicted gene, 42195
Cpgi13023 3 27938315 to 27939308 993 CpG island CpG island 13023
Tssr28634 3 27938609 to 27938634 25 + TSS region transcription start site region 28634
Tssr28635 3 27938638 to 27938679 41 + TSS region transcription start site region 28635
Pld1 3 27938695 to 28133362 194667 + protein coding gene phospholipase D1
Tssr28636 3 27961811 to 27961816 5 + TSS region transcription start site region 28636
Tssr28637 3 27984145 to 27984200 55 + TSS region transcription start site region 28637
Tssr28638 3 27984272 to 27984290 18 + TSS region transcription start site region 28638
Tssr28639 3 27984635 to 27984639 4 + TSS region transcription start site region 28639
Tssr28640 3 28034668 to 28034672 4 + TSS region transcription start site region 28640
Tssr28641 3 28052642 to 28052643 1 + TSS region transcription start site region 28641
Tssr32863 3 28157162 to 28157165 3 - TSS region transcription start site region 32863
Tssr32864 3 28164744 to 28164748 4 - TSS region transcription start site region 32864
Gm42196 3 28176512 to 28211377 34865 + lincRNA gene predicted gene, 42196
Cpgi13024 3 28226309 to 28226480 171 CpG island CpG island 13024
Tssr28642 3 28245449 to 28245459 10 + TSS region transcription start site region 28642
Gm37098 3 28245523 to 28245766 243 + pseudogene predicted gene, 37098
Cpgi13025 3 28262376 to 28264023 1647 CpG island CpG island 13025
Tssr28643 3 28263205 to 28263214 9 + TSS region transcription start site region 28643
Tnik 3 28263214 to 28672457 409243 + protein coding gene TRAF2 and NCK interacting kinase
Tssr28644 3 28263231 to 28263333 102 + TSS region transcription start site region 28644
Tssr28645 3 28263355 to 28263386 31 + TSS region transcription start site region 28645
Tssr28646 3 28263396 to 28263413 17 + TSS region transcription start site region 28646
Tssr28647 3 28263423 to 28263428 5 + TSS region transcription start site region 28647
Tssr28648 3 28263432 to 28263437 5 + TSS region transcription start site region 28648
Tssr28649 3 28263567 to 28263577 10 + TSS region transcription start site region 28649
Tssr32865 3 28264235 to 28264249 14 - TSS region transcription start site region 32865
Tssr32866 3 28265230 to 28265247 17 - TSS region transcription start site region 32866
AA589472 3 28269281 to 28269829 548 unclassified gene expressed sequence AA589472
Tssr28650 3 28313305 to 28313309 4 + TSS region transcription start site region 28650
Gm37537 3 28324357 to 28326094 1737 + unclassified gene predicted gene, 37537
Mir466q 3 28419943 to 28420018 75 + miRNA gene microRNA 466q
Tssr847 3 28431529 to 28431532 3 + TSS region transcription start site region 847
Tssr848 3 28463679 to 28463682 3 + TSS region transcription start site region 848
Tssr28651 3 28559155 to 28559160 5 + TSS region transcription start site region 28651
D3Mit55 3 28576304 to 28576442 138 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 55
Eae20 3 28576304 to 28576442 138 QTL experimental allergic encephalomyelitis susceptibility 20
Cpgi13026 3 28577407 to 28577563 156 CpG island CpG island 13026
Tssr849 3 28581185 to 28581192 7 + TSS region transcription start site region 849
D3Mit325 3 28631047 to 28631155 108 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-325
Cpgi13027 3 28691355 to 28691521 166 CpG island CpG island 13027
Tssr28652 3 28695706 to 28695741 35 + TSS region transcription start site region 28652
Tssr28653 3 28697901 to 28697912 11 + TSS region transcription start site region 28653
Slc2a2 3 28697903 to 28728361 30458 + protein coding gene solute carrier family 2 (facilitated glucose transporter), member 2
Tssr28654 3 28697946 to 28697980 34 + TSS region transcription start site region 28654
D3Mit268 3 28718080 to 28718182 102 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 268
Tssr28655 3 28721506 to 28721547 41 + TSS region transcription start site region 28655
Tssr28656 3 28727966 to 28728016 50 + TSS region transcription start site region 28656
Tssr28657 3 28728829 to 28728841 12 + TSS region transcription start site region 28657
Tssr28658 3 28729087 to 28729098 11 + TSS region transcription start site region 28658
1700112D23Rik 3 28738778 to 28772746 33968 - antisense lncRNA gene RIKEN cDNA 1700112D23 gene
Gm6505 3 28764713 to 28765360 647 - pseudogene predicted pseudogene 6505
Tssr32867 3 28765366 to 28765389 23 - TSS region transcription start site region 32867
Cpgi13028 3 28780828 to 28782022 1194 CpG island CpG island 13028
Tssr32868 3 28781103 to 28781130 27 - TSS region transcription start site region 32868
Eif5a2 3 28781276 to 28798846 17570 + protein coding gene eukaryotic translation initiation factor 5A2
Tssr28659 3 28781305 to 28781344 39 + TSS region transcription start site region 28659
Tssr28660 3 28781345 to 28781374 29 + TSS region transcription start site region 28660
Gm32950 3 28802804 to 28805336 2532 - lincRNA gene predicted gene, 32950
Cpgi13029 3 28805203 to 28806043 840 CpG island CpG island 13029
Tssr32869 3 28805328 to 28805360 32 - TSS region transcription start site region 32869
Rpl22l1 3 28805444 to 28807424 1980 + protein coding gene ribosomal protein L22 like 1
Tssr28661 3 28805498 to 28805521 23 + TSS region transcription start site region 28661
Gm33051 3 28810187 to 28816183 5996 - antisense lncRNA gene predicted gene, 33051
Tssr32870 3 28816243 to 28816254 11 - TSS region transcription start site region 32870
Tssr32871 3 28816264 to 28816275 11 - TSS region transcription start site region 32871
D3Mit369 3 28834409 to 28834519 110 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-369
Gm37867 3 28852033 to 28854257 2224 - lincRNA gene predicted gene, 37867
Gm37924 3 28879812 to 28883458 3646 + unclassified gene predicted gene, 37924
Gm33102 3 28883456 to 28897284 13828 - lncRNA gene predicted gene, 33102
Tssr28662 3 28892617 to 28892619 2 + TSS region transcription start site region 28662
Gm1527 3 28892617 to 28926724 34107 + protein coding gene predicted gene 1527
Tssr28663 3 28893723 to 28893727 4 + TSS region transcription start site region 28663
Tssr32872 3 28897157 to 28897171 14 - TSS region transcription start site region 32872
Tssr850 3 28956371 to 28956378 7 + TSS region transcription start site region 850
Tssr28664 3 28986639 to 28986642 3 + TSS region transcription start site region 28664
Gm33154 3 29043768 to 29045547 1779 - lncRNA gene predicted gene, 33154
D3Mit93 3 29063468 to 29063630 162 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 93
Egfem1 3 29082023 to 29691209 609186 + protein coding gene EGF-like and EMI domain containing 1
Cpgi13030 3 29082253 to 29083130 877 CpG island CpG island 13030
Tssr28665 3 29082539 to 29082590 51 + TSS region transcription start site region 28665
D3Mit118 3 29083300 to 29083442 142 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 118
Tssr28666 3 29109801 to 29109807 6 + TSS region transcription start site region 28666
Tssr28667 3 29154218 to 29154226 8 + TSS region transcription start site region 28667
Gm38029 3 29174838 to 29176927 2089 + unclassified gene predicted gene, 38029
Tssr28668 3 29198768 to 29198770 2 + TSS region transcription start site region 28668
D230021J17Rik 3 29209341 to 29211977 2636 unclassified gene RIKEN cDNA D230021J17 gene
Gm37965 3 29219887 to 29221248 1361 + unclassified gene predicted gene, 37965
Tssr28669 3 29235927 to 29235931 4 + TSS region transcription start site region 28669
Tssr28670 3 29240422 to 29240425 3 + TSS region transcription start site region 28670
Tssr28671 3 29260999 to 29261003 4 + TSS region transcription start site region 28671
AA516838 3 29266280 to 29266842 562 unclassified gene expressed sequence AA516838
Tssr851 3 29268526 to 29268529 3 + TSS region transcription start site region 851
Tssr28672 3 29314725 to 29314734 9 + TSS region transcription start site region 28672
Tssr28673 3 29377856 to 29377860 4 + TSS region transcription start site region 28673
Mir551b 3 29416823 to 29416920 97 + miRNA gene microRNA 551b
Tssr28674 3 29467899 to 29467904 5 + TSS region transcription start site region 28674
Tssr28675 3 29541893 to 29541895 2 + TSS region transcription start site region 28675
Mir21b 3 29636744 to 29636851 107 + miRNA gene microRNA 21b
Gm42197 3 29662513 to 29696560 34047 - lncRNA gene predicted gene, 42197