Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:26067618-27207637

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nlgn1 3 25431841 to 26332862 901021 - protein coding gene neuroligin 1
Tssr32818 3 26098721 to 26098722 1 - TSS region transcription start site region 32818
Tssr32819 3 26102361 to 26102362 1 - TSS region transcription start site region 32819
Tssr32820 3 26116322 to 26116323 1 - TSS region transcription start site region 32820
Tssr32821 3 26119411 to 26119432 21 - TSS region transcription start site region 32821
Cpgi13014 3 26153048 to 26153363 315 CpG island CpG island 13014
Tssr32822 3 26153414 to 26153466 52 - TSS region transcription start site region 32822
Tssr32823 3 26153641 to 26153657 16 - TSS region transcription start site region 32823
Tssr32824 3 26153896 to 26153899 3 - TSS region transcription start site region 32824
Tssr32825 3 26153957 to 26153994 37 - TSS region transcription start site region 32825
Tssr32826 3 26153995 to 26154006 11 - TSS region transcription start site region 32826
D3Mit92.1 3 26182184 to 26182299 115 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 92.1
D3Mit92 3 26182244 to 26182486 242 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 92
Tssr844 3 26302245 to 26302248 3 + TSS region transcription start site region 844
Tssr32827 3 26317828 to 26317830 2 - TSS region transcription start site region 32827
Tssr32828 3 26321652 to 26321656 4 - TSS region transcription start site region 32828
Tssr32829 3 26331037 to 26331054 17 - TSS region transcription start site region 32829
A830092H15Rik 3 26331150 to 26333377 2227 + antisense lncRNA gene RIKEN cDNA A830092H15 gene
Cpgi13015 3 26331294 to 26332134 840 CpG island CpG island 13015
Tssr32830 3 26331500 to 26331514 14 - TSS region transcription start site region 32830
Tssr32831 3 26331806 to 26331820 14 - TSS region transcription start site region 32831
Tssr32832 3 26331830 to 26331849 19 - TSS region transcription start site region 32832
Tssr32833 3 26331854 to 26331901 47 - TSS region transcription start site region 32833
Tssr32834 3 26331904 to 26331917 13 - TSS region transcription start site region 32834
Tssr32835 3 26331934 to 26331943 9 - TSS region transcription start site region 32835
Cpgi13016 3 26333172 to 26333992 820 CpG island CpG island 13016
Gm4855 3 26380445 to 26382411 1966 + pseudogene predicted gene 4855
D3Mit367 3 26464651 to 26464797 146 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-367
Gm25773 3 26626185 to 26626311 126 - miRNA gene predicted gene, 25773
Tssr28597 3 26637618 to 26637637 19 + TSS region transcription start site region 28597
Spata16 3 26637620 to 26983212 345592 + protein coding gene spermatogenesis associated 16
Tssr28598 3 26637646 to 26637660 14 + TSS region transcription start site region 28598
Gm32458 3 26850203 to 26879138 28935 - lncRNA gene predicted gene, 32458
D3Mit203 3 26936104 to 26936253 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 203
Cpgi13017 3 26936869 to 26937137 268 CpG island CpG island 13017
Gm37659 3 27012764 to 27012874 110 + pseudogene predicted gene, 37659
Tssr28599 3 27014412 to 27014416 4 + TSS region transcription start site region 28599
Gm44464 3 27026418 to 27026555 137 - miRNA gene predicted gene, 44464
Gm7558 3 27046789 to 27047953 1164 - pseudogene predicted gene 7558
Tssr28600 3 27064048 to 27064059 11 + TSS region transcription start site region 28600
Ect2 3 27097222 to 27153878 56656 - protein coding gene ect2 oncogene
Gm25152 3 27108982 to 27109095 113 + snoRNA gene predicted gene, 25152
Cpgi13018 3 27153403 to 27154207 804 CpG island CpG island 13018
Tssr32836 3 27153806 to 27153842 36 - TSS region transcription start site region 32836
Tssr32837 3 27153844 to 27153855 11 - TSS region transcription start site region 32837
Tssr32838 3 27153865 to 27153876 11 - TSS region transcription start site region 32838
Tssr28601 3 27154020 to 27154031 11 + TSS region transcription start site region 28601
1700125G22Rik 3 27154026 to 27157019 2993 + lincRNA gene RIKEN cDNA 1700125G22 gene
Tssr28602 3 27154032 to 27154060 28 + TSS region transcription start site region 28602
Cpgi13019 3 27182732 to 27183968 1236 CpG island CpG island 13019
Tssr28603 3 27182973 to 27182986 13 + TSS region transcription start site region 28603
Tssr28604 3 27182994 to 27183017 23 + TSS region transcription start site region 28604
Nceh1 3 27183004 to 27245266 62262 + protein coding gene neutral cholesterol ester hydrolase 1
Tssr28605 3 27183740 to 27183745 5 + TSS region transcription start site region 28605
Tssr28606 3 27183770 to 27183804 34 + TSS region transcription start site region 28606
Tssr28607 3 27188376 to 27188409 33 + TSS region transcription start site region 28607
Tssr28608 3 27188413 to 27188441 28 + TSS region transcription start site region 28608
Tssr28609 3 27188447 to 27188458 11 + TSS region transcription start site region 28609
Tssr32839 3 27191930 to 27191944 14 - TSS region transcription start site region 32839
Tssr32840 3 27191974 to 27191986 12 - TSS region transcription start site region 32840
Tssr28610 3 27192132 to 27192146 14 + TSS region transcription start site region 28610
Tssr32841 3 27194069 to 27194084 15 - TSS region transcription start site region 32841
Tssr32842 3 27194124 to 27194158 34 - TSS region transcription start site region 32842
Tssr32843 3 27194195 to 27194206 11 - TSS region transcription start site region 32843
Tssr28611 3 27194260 to 27194266 6 + TSS region transcription start site region 28611
Tssr28612 3 27194365 to 27194373 8 + TSS region transcription start site region 28612
Tssr28613 3 27194694 to 27194699 5 + TSS region transcription start site region 28613
D3Mit305 3 27198957 to 27199064 107 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 305