Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:25777132-28607146

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200 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nlgn1 3 25431841 to 26332862 901021 - protein coding gene neuroligin 1
Tssr32787 3 25790397 to 25790409 12 - TSS region transcription start site region 32787
Tssr32788 3 25790594 to 25790638 44 - TSS region transcription start site region 32788
Tssr32789 3 25818838 to 25818842 4 - TSS region transcription start site region 32789
Tssr32790 3 25824371 to 25824374 3 - TSS region transcription start site region 32790
Tssr32791 3 25832966 to 25832977 11 - TSS region transcription start site region 32791
Tssr32792 3 25833031 to 25833042 11 - TSS region transcription start site region 32792
Tssr32793 3 25835298 to 25835302 4 - TSS region transcription start site region 32793
Tssr32794 3 25838448 to 25838463 15 - TSS region transcription start site region 32794
Tssr32795 3 25838531 to 25838547 16 - TSS region transcription start site region 32795
Tssr32796 3 25840878 to 25840882 4 - TSS region transcription start site region 32796
Tssr32797 3 25847284 to 25847297 13 - TSS region transcription start site region 32797
Tssr32798 3 25847331 to 25847346 15 - TSS region transcription start site region 32798
Tssr32799 3 25847361 to 25847370 9 - TSS region transcription start site region 32799
Tssr32800 3 25847428 to 25847440 12 - TSS region transcription start site region 32800
Tssr32801 3 25857403 to 25857407 4 - TSS region transcription start site region 32801
A830010M09Rik 3 25865654 to 25867515 1861 unclassified gene RIKEN cDNA A830010M09 gene
Tssr32802 3 25868706 to 25868754 48 - TSS region transcription start site region 32802
Tssr32803 3 25869832 to 25869846 14 - TSS region transcription start site region 32803
Tssr32804 3 25872603 to 25872613 10 - TSS region transcription start site region 32804
Tssr32805 3 25893543 to 25893554 11 - TSS region transcription start site region 32805
Tssr32806 3 25936740 to 25936744 4 - TSS region transcription start site region 32806
Tssr32807 3 26027087 to 26027099 12 - TSS region transcription start site region 32807
Tssr32808 3 26027129 to 26027140 11 - TSS region transcription start site region 32808
Tssr32809 3 26027255 to 26027266 11 - TSS region transcription start site region 32809
Tssr32810 3 26027281 to 26027294 13 - TSS region transcription start site region 32810
Tssr32811 3 26027360 to 26027369 9 - TSS region transcription start site region 32811
Tssr32812 3 26027399 to 26027410 11 - TSS region transcription start site region 32812
Tssr32813 3 26046035 to 26046051 16 - TSS region transcription start site region 32813
Tssr32814 3 26046093 to 26046109 16 - TSS region transcription start site region 32814
Tssr32815 3 26046296 to 26046317 21 - TSS region transcription start site region 32815
Tssr32816 3 26046431 to 26046440 9 - TSS region transcription start site region 32816
Tssr32817 3 26059432 to 26059437 5 - TSS region transcription start site region 32817
Tssr32818 3 26098721 to 26098722 1 - TSS region transcription start site region 32818
Tssr32819 3 26102361 to 26102362 1 - TSS region transcription start site region 32819
Tssr32820 3 26116322 to 26116323 1 - TSS region transcription start site region 32820
Tssr32821 3 26119411 to 26119432 21 - TSS region transcription start site region 32821
Cpgi13014 3 26153048 to 26153363 315 CpG island CpG island 13014
Tssr32822 3 26153414 to 26153466 52 - TSS region transcription start site region 32822
Tssr32823 3 26153641 to 26153657 16 - TSS region transcription start site region 32823
Tssr32824 3 26153896 to 26153899 3 - TSS region transcription start site region 32824
Tssr32825 3 26153957 to 26153994 37 - TSS region transcription start site region 32825
Tssr32826 3 26153995 to 26154006 11 - TSS region transcription start site region 32826
D3Mit92.1 3 26182184 to 26182299 115 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 92.1
D3Mit92 3 26182244 to 26182486 242 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 92
Tssr844 3 26302245 to 26302248 3 + TSS region transcription start site region 844
Tssr32827 3 26317828 to 26317830 2 - TSS region transcription start site region 32827
Tssr32828 3 26321652 to 26321656 4 - TSS region transcription start site region 32828
Tssr32829 3 26331037 to 26331054 17 - TSS region transcription start site region 32829
A830092H15Rik 3 26331150 to 26333377 2227 + antisense lncRNA gene RIKEN cDNA A830092H15 gene
Cpgi13015 3 26331294 to 26332134 840 CpG island CpG island 13015
Tssr32830 3 26331500 to 26331514 14 - TSS region transcription start site region 32830
Tssr32831 3 26331806 to 26331820 14 - TSS region transcription start site region 32831
Tssr32832 3 26331830 to 26331849 19 - TSS region transcription start site region 32832
Tssr32833 3 26331854 to 26331901 47 - TSS region transcription start site region 32833
Tssr32834 3 26331904 to 26331917 13 - TSS region transcription start site region 32834
Tssr32835 3 26331934 to 26331943 9 - TSS region transcription start site region 32835
Cpgi13016 3 26333172 to 26333992 820 CpG island CpG island 13016
Gm4855 3 26380445 to 26382411 1966 + pseudogene predicted gene 4855
D3Mit367 3 26464651 to 26464797 146 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-367
Gm25773 3 26626185 to 26626311 126 - miRNA gene predicted gene, 25773
Tssr28597 3 26637618 to 26637637 19 + TSS region transcription start site region 28597
Spata16 3 26637620 to 26983212 345592 + protein coding gene spermatogenesis associated 16
Tssr28598 3 26637646 to 26637660 14 + TSS region transcription start site region 28598
Gm32458 3 26850203 to 26879138 28935 - lncRNA gene predicted gene, 32458
D3Mit203 3 26936104 to 26936253 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 203
Cpgi13017 3 26936869 to 26937137 268 CpG island CpG island 13017
Gm37659 3 27012764 to 27012874 110 + pseudogene predicted gene, 37659
Tssr28599 3 27014412 to 27014416 4 + TSS region transcription start site region 28599
Gm44464 3 27026418 to 27026555 137 - miRNA gene predicted gene, 44464
Gm7558 3 27046789 to 27047953 1164 - pseudogene predicted gene 7558
Tssr28600 3 27064048 to 27064059 11 + TSS region transcription start site region 28600
Ect2 3 27097222 to 27153878 56656 - protein coding gene ect2 oncogene
Gm25152 3 27108982 to 27109095 113 + snoRNA gene predicted gene, 25152
Cpgi13018 3 27153403 to 27154207 804 CpG island CpG island 13018
Tssr32836 3 27153806 to 27153842 36 - TSS region transcription start site region 32836
Tssr32837 3 27153844 to 27153855 11 - TSS region transcription start site region 32837
Tssr32838 3 27153865 to 27153876 11 - TSS region transcription start site region 32838
Tssr28601 3 27154020 to 27154031 11 + TSS region transcription start site region 28601
1700125G22Rik 3 27154026 to 27157019 2993 + lincRNA gene RIKEN cDNA 1700125G22 gene
Tssr28602 3 27154032 to 27154060 28 + TSS region transcription start site region 28602
Cpgi13019 3 27182732 to 27183968 1236 CpG island CpG island 13019
Tssr28603 3 27182973 to 27182986 13 + TSS region transcription start site region 28603
Tssr28604 3 27182994 to 27183017 23 + TSS region transcription start site region 28604
Nceh1 3 27183004 to 27245266 62262 + protein coding gene neutral cholesterol ester hydrolase 1
Tssr28605 3 27183740 to 27183745 5 + TSS region transcription start site region 28605
Tssr28606 3 27183770 to 27183804 34 + TSS region transcription start site region 28606
Tssr28607 3 27188376 to 27188409 33 + TSS region transcription start site region 28607
Tssr28608 3 27188413 to 27188441 28 + TSS region transcription start site region 28608
Tssr28609 3 27188447 to 27188458 11 + TSS region transcription start site region 28609
Tssr32839 3 27191930 to 27191944 14 - TSS region transcription start site region 32839
Tssr32840 3 27191974 to 27191986 12 - TSS region transcription start site region 32840
Tssr28610 3 27192132 to 27192146 14 + TSS region transcription start site region 28610
Tssr32841 3 27194069 to 27194084 15 - TSS region transcription start site region 32841
Tssr32842 3 27194124 to 27194158 34 - TSS region transcription start site region 32842
Tssr32843 3 27194195 to 27194206 11 - TSS region transcription start site region 32843
Tssr28611 3 27194260 to 27194266 6 + TSS region transcription start site region 28611
Tssr28612 3 27194365 to 27194373 8 + TSS region transcription start site region 28612
Tssr28613 3 27194694 to 27194699 5 + TSS region transcription start site region 28613
D3Mit305 3 27198957 to 27199064 107 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 305
Tssr32844 3 27209835 to 27209839 4 - TSS region transcription start site region 32844
Tssr28614 3 27210464 to 27210479 15 + TSS region transcription start site region 28614
Tssr28615 3 27221137 to 27221141 4 + TSS region transcription start site region 28615
Tssr845 3 27222292 to 27222298 6 + TSS region transcription start site region 845
Tssr28616 3 27227290 to 27227302 12 + TSS region transcription start site region 28616
Tssr28617 3 27231502 to 27231522 20 + TSS region transcription start site region 28617
Tssr28618 3 27231537 to 27231554 17 + TSS region transcription start site region 28618
Tssr32845 3 27240568 to 27240573 5 - TSS region transcription start site region 32845
Tssr28619 3 27241421 to 27241432 11 + TSS region transcription start site region 28619
Tssr28620 3 27241547 to 27241564 17 + TSS region transcription start site region 28620
Tssr28621 3 27241577 to 27241615 38 + TSS region transcription start site region 28621
Tssr28622 3 27241620 to 27241665 45 + TSS region transcription start site region 28622
Tssr28623 3 27242783 to 27242794 11 + TSS region transcription start site region 28623
Tssr32846 3 27258692 to 27258708 16 - TSS region transcription start site region 32846
Tssr32847 3 27258709 to 27258736 27 - TSS region transcription start site region 32847
Gm42192 3 27260329 to 27284461 24132 + lncRNA gene predicted gene, 42192
Gm37191 3 27278060 to 27278447 387 + pseudogene predicted gene, 37191
Cpgi13020 3 27283487 to 27283675 188 CpG island CpG island 13020
Gm43345 3 27308406 to 27308674 268 - pseudogene predicted gene 43345
Tssr28624 3 27316896 to 27316927 31 + TSS region transcription start site region 28624
Tssr32848 3 27316980 to 27317000 20 - TSS region transcription start site region 32848
Tssr28625 3 27317019 to 27317026 7 + TSS region transcription start site region 28625
Tssr28626 3 27317059 to 27317084 25 + TSS region transcription start site region 28626
Tnfsf10 3 27317077 to 27339665 22588 + protein coding gene tumor necrosis factor (ligand) superfamily, member 10
Tssr846 3 27317086 to 27317097 11 + TSS region transcription start site region 846
Tssr28627 3 27317106 to 27317117 11 + TSS region transcription start site region 28627
Cpgi13021 3 27371143 to 27372660 1517 CpG island CpG island 13021
Ghsr 3 27371351 to 27378010 6659 + protein coding gene growth hormone secretagogue receptor
C430049A07Rik 3 27415105 to 27416151 1046 unclassified gene RIKEN cDNA C430049A07 gene
Fndc3b 3 27416162 to 27711307 295145 - protein coding gene fibronectin type III domain containing 3B
Tssr32849 3 27439076 to 27439084 8 - TSS region transcription start site region 32849
Gm42193 3 27441655 to 27444111 2456 + lncRNA gene predicted gene, 42193
Gm32738 3 27482284 to 27484243 1959 + lncRNA gene predicted gene, 32738
Tssr28628 3 27482493 to 27482504 11 + TSS region transcription start site region 28628
Tssr28629 3 27482511 to 27482522 11 + TSS region transcription start site region 28629
Tssr28630 3 27482528 to 27482533 5 + TSS region transcription start site region 28630
D3Ertd452e 3 27504693 to 27504919 226 DNA segment DNA segment, Chr 3, ERATO Doi 452, expressed
Gm43344 3 27546641 to 27547869 1228 + unclassified gene predicted gene 43344
Tssr32850 3 27556153 to 27556168 15 - TSS region transcription start site region 32850
Tssr28631 3 27557396 to 27557410 14 + TSS region transcription start site region 28631
Mir3092 3 27584900 to 27584995 95 - miRNA gene microRNA 3092
Tssr32851 3 27605702 to 27605717 15 - TSS region transcription start site region 32851
Tssr28632 3 27617334 to 27617368 34 + TSS region transcription start site region 28632
D3Mit366 3 27656036 to 27656303 267 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-366
Tssr32852 3 27656866 to 27656878 12 - TSS region transcription start site region 32852
Tssr28633 3 27689675 to 27689680 5 + TSS region transcription start site region 28633
Tssr32853 3 27691545 to 27691556 11 - TSS region transcription start site region 32853
Tssr32854 3 27691607 to 27691633 26 - TSS region transcription start site region 32854
Tssr32855 3 27695861 to 27695894 33 - TSS region transcription start site region 32855
Cpgi13022 3 27709799 to 27711553 1754 CpG island CpG island 13022
Tssr32856 3 27710373 to 27710388 15 - TSS region transcription start site region 32856
Tssr32857 3 27710413 to 27710467 54 - TSS region transcription start site region 32857
Tssr32858 3 27711233 to 27711248 15 - TSS region transcription start site region 32858
Tssr32859 3 27711255 to 27711338 83 - TSS region transcription start site region 32859
Gm42194 3 27777858 to 27840919 63061 + lncRNA gene predicted gene, 42194
Gm32795 3 27797877 to 27815382 17505 - lncRNA gene predicted gene, 32795
Tssr32860 3 27863456 to 27863471 15 - TSS region transcription start site region 32860
Tmem212 3 27866066 to 27896368 30302 - protein coding gene transmembrane protein 212
Gm26040 3 27868113 to 27868273 160 + snoRNA gene predicted gene, 26040
Tssr32861 3 27896347 to 27896356 9 - TSS region transcription start site region 32861
Tssr32862 3 27896360 to 27896390 30 - TSS region transcription start site region 32862
Gm42195 3 27896803 to 27900234 3431 - lncRNA gene predicted gene, 42195
Cpgi13023 3 27938315 to 27939308 993 CpG island CpG island 13023
Tssr28634 3 27938609 to 27938634 25 + TSS region transcription start site region 28634
Tssr28635 3 27938638 to 27938679 41 + TSS region transcription start site region 28635
Pld1 3 27938695 to 28133362 194667 + protein coding gene phospholipase D1
Tssr28636 3 27961811 to 27961816 5 + TSS region transcription start site region 28636
Tssr28637 3 27984145 to 27984200 55 + TSS region transcription start site region 28637
Tssr28638 3 27984272 to 27984290 18 + TSS region transcription start site region 28638
Tssr28639 3 27984635 to 27984639 4 + TSS region transcription start site region 28639
Tssr28640 3 28034668 to 28034672 4 + TSS region transcription start site region 28640
Tssr28641 3 28052642 to 28052643 1 + TSS region transcription start site region 28641
Tssr32863 3 28157162 to 28157165 3 - TSS region transcription start site region 32863
Tssr32864 3 28164744 to 28164748 4 - TSS region transcription start site region 32864
Gm42196 3 28176512 to 28211377 34865 + lincRNA gene predicted gene, 42196
Cpgi13024 3 28226309 to 28226480 171 CpG island CpG island 13024
Tssr28642 3 28245449 to 28245459 10 + TSS region transcription start site region 28642
Gm37098 3 28245523 to 28245766 243 + pseudogene predicted gene, 37098
Cpgi13025 3 28262376 to 28264023 1647 CpG island CpG island 13025
Tssr28643 3 28263205 to 28263214 9 + TSS region transcription start site region 28643
Tnik 3 28263214 to 28672457 409243 + protein coding gene TRAF2 and NCK interacting kinase
Tssr28644 3 28263231 to 28263333 102 + TSS region transcription start site region 28644
Tssr28645 3 28263355 to 28263386 31 + TSS region transcription start site region 28645
Tssr28646 3 28263396 to 28263413 17 + TSS region transcription start site region 28646
Tssr28647 3 28263423 to 28263428 5 + TSS region transcription start site region 28647
Tssr28648 3 28263432 to 28263437 5 + TSS region transcription start site region 28648
Tssr28649 3 28263567 to 28263577 10 + TSS region transcription start site region 28649
Tssr32865 3 28264235 to 28264249 14 - TSS region transcription start site region 32865
Tssr32866 3 28265230 to 28265247 17 - TSS region transcription start site region 32866
AA589472 3 28269281 to 28269829 548 unclassified gene expressed sequence AA589472
Tssr28650 3 28313305 to 28313309 4 + TSS region transcription start site region 28650
Gm37537 3 28324357 to 28326094 1737 + unclassified gene predicted gene, 37537
Mir466q 3 28419943 to 28420018 75 + miRNA gene microRNA 466q
Tssr847 3 28431529 to 28431532 3 + TSS region transcription start site region 847
Tssr848 3 28463679 to 28463682 3 + TSS region transcription start site region 848
Tssr28651 3 28559155 to 28559160 5 + TSS region transcription start site region 28651
Eae20 3 28576304 to 28576442 138 QTL experimental allergic encephalomyelitis susceptibility 20
D3Mit55 3 28576304 to 28576442 138 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 55
Cpgi13026 3 28577407 to 28577563 156 CpG island CpG island 13026
Tssr849 3 28581185 to 28581192 7 + TSS region transcription start site region 849