Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:25421150-27243377

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr32772 3 25431719 to 25431723 4 - TSS region transcription start site region 32772
Nlgn1 3 25431841 to 26332862 901021 - protein coding gene neuroligin 1
Tssr32773 3 25536794 to 25536795 1 - TSS region transcription start site region 32773
Gm24250 3 25546020 to 25546154 134 + rRNA gene predicted gene, 24250
Tssr32774 3 25590390 to 25590398 8 - TSS region transcription start site region 32774
Tssr32775 3 25599069 to 25599073 4 - TSS region transcription start site region 32775
3110039C02Rik 3 25649562 to 25650767 1205 unclassified gene RIKEN cDNA 3110039C02 gene
Tssr32776 3 25661905 to 25661921 16 - TSS region transcription start site region 32776
Tssr32777 3 25672653 to 25672658 5 - TSS region transcription start site region 32777
Tssr32778 3 25685334 to 25685355 21 - TSS region transcription start site region 32778
Gm37573 3 25695195 to 25700303 5108 - sense intronic lncRNA gene predicted gene, 37573
Tssr32779 3 25697962 to 25697987 25 - TSS region transcription start site region 32779
Tssr32780 3 25698015 to 25698036 21 - TSS region transcription start site region 32780
Tssr32781 3 25698131 to 25698139 8 - TSS region transcription start site region 32781
Tssr32782 3 25700227 to 25700250 23 - TSS region transcription start site region 32782
Tssr32783 3 25705065 to 25705073 8 - TSS region transcription start site region 32783
Tssr32784 3 25712390 to 25712402 12 - TSS region transcription start site region 32784
Tssr28596 3 25731182 to 25731216 34 + TSS region transcription start site region 28596
Gm6197 3 25731243 to 25731696 453 + pseudogene predicted gene 6197
Tssr32785 3 25743248 to 25743251 3 - TSS region transcription start site region 32785
Tssr32786 3 25749074 to 25749076 2 - TSS region transcription start site region 32786
Tssr32787 3 25790397 to 25790409 12 - TSS region transcription start site region 32787
Tssr32788 3 25790594 to 25790638 44 - TSS region transcription start site region 32788
Tssr32789 3 25818838 to 25818842 4 - TSS region transcription start site region 32789
Tssr32790 3 25824371 to 25824374 3 - TSS region transcription start site region 32790
Tssr32791 3 25832966 to 25832977 11 - TSS region transcription start site region 32791
Tssr32792 3 25833031 to 25833042 11 - TSS region transcription start site region 32792
Tssr32793 3 25835298 to 25835302 4 - TSS region transcription start site region 32793
Tssr32794 3 25838448 to 25838463 15 - TSS region transcription start site region 32794
Tssr32795 3 25838531 to 25838547 16 - TSS region transcription start site region 32795
Tssr32796 3 25840878 to 25840882 4 - TSS region transcription start site region 32796
Tssr32797 3 25847284 to 25847297 13 - TSS region transcription start site region 32797
Tssr32798 3 25847331 to 25847346 15 - TSS region transcription start site region 32798
Tssr32799 3 25847361 to 25847370 9 - TSS region transcription start site region 32799
Tssr32800 3 25847428 to 25847440 12 - TSS region transcription start site region 32800
Tssr32801 3 25857403 to 25857407 4 - TSS region transcription start site region 32801
A830010M09Rik 3 25865654 to 25867515 1861 unclassified gene RIKEN cDNA A830010M09 gene
Tssr32802 3 25868706 to 25868754 48 - TSS region transcription start site region 32802
Tssr32803 3 25869832 to 25869846 14 - TSS region transcription start site region 32803
Tssr32804 3 25872603 to 25872613 10 - TSS region transcription start site region 32804
Tssr32805 3 25893543 to 25893554 11 - TSS region transcription start site region 32805
Tssr32806 3 25936740 to 25936744 4 - TSS region transcription start site region 32806
Tssr32807 3 26027087 to 26027099 12 - TSS region transcription start site region 32807
Tssr32808 3 26027129 to 26027140 11 - TSS region transcription start site region 32808
Tssr32809 3 26027255 to 26027266 11 - TSS region transcription start site region 32809
Tssr32810 3 26027281 to 26027294 13 - TSS region transcription start site region 32810
Tssr32811 3 26027360 to 26027369 9 - TSS region transcription start site region 32811
Tssr32812 3 26027399 to 26027410 11 - TSS region transcription start site region 32812
Tssr32813 3 26046035 to 26046051 16 - TSS region transcription start site region 32813
Tssr32814 3 26046093 to 26046109 16 - TSS region transcription start site region 32814
Tssr32815 3 26046296 to 26046317 21 - TSS region transcription start site region 32815
Tssr32816 3 26046431 to 26046440 9 - TSS region transcription start site region 32816
Tssr32817 3 26059432 to 26059437 5 - TSS region transcription start site region 32817
Tssr32818 3 26098721 to 26098722 1 - TSS region transcription start site region 32818
Tssr32819 3 26102361 to 26102362 1 - TSS region transcription start site region 32819
Tssr32820 3 26116322 to 26116323 1 - TSS region transcription start site region 32820
Tssr32821 3 26119411 to 26119432 21 - TSS region transcription start site region 32821
Cpgi13014 3 26153048 to 26153363 315 CpG island CpG island 13014
Tssr32822 3 26153414 to 26153466 52 - TSS region transcription start site region 32822
Tssr32823 3 26153641 to 26153657 16 - TSS region transcription start site region 32823
Tssr32824 3 26153896 to 26153899 3 - TSS region transcription start site region 32824
Tssr32825 3 26153957 to 26153994 37 - TSS region transcription start site region 32825
Tssr32826 3 26153995 to 26154006 11 - TSS region transcription start site region 32826
D3Mit92.1 3 26182184 to 26182299 115 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 92.1
D3Mit92 3 26182244 to 26182486 242 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 92
Tssr844 3 26302245 to 26302248 3 + TSS region transcription start site region 844
Tssr32827 3 26317828 to 26317830 2 - TSS region transcription start site region 32827
Tssr32828 3 26321652 to 26321656 4 - TSS region transcription start site region 32828
Tssr32829 3 26331037 to 26331054 17 - TSS region transcription start site region 32829
A830092H15Rik 3 26331150 to 26333377 2227 + antisense lncRNA gene RIKEN cDNA A830092H15 gene
Cpgi13015 3 26331294 to 26332134 840 CpG island CpG island 13015
Tssr32830 3 26331500 to 26331514 14 - TSS region transcription start site region 32830
Tssr32831 3 26331806 to 26331820 14 - TSS region transcription start site region 32831
Tssr32832 3 26331830 to 26331849 19 - TSS region transcription start site region 32832
Tssr32833 3 26331854 to 26331901 47 - TSS region transcription start site region 32833
Tssr32834 3 26331904 to 26331917 13 - TSS region transcription start site region 32834
Tssr32835 3 26331934 to 26331943 9 - TSS region transcription start site region 32835
Cpgi13016 3 26333172 to 26333992 820 CpG island CpG island 13016
Gm4855 3 26380445 to 26382411 1966 + pseudogene predicted gene 4855
D3Mit367 3 26464651 to 26464797 146 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-367
Gm25773 3 26626185 to 26626311 126 - miRNA gene predicted gene, 25773
Tssr28597 3 26637618 to 26637637 19 + TSS region transcription start site region 28597
Spata16 3 26637620 to 26983212 345592 + protein coding gene spermatogenesis associated 16
Tssr28598 3 26637646 to 26637660 14 + TSS region transcription start site region 28598
Gm32458 3 26850203 to 26879138 28935 - lncRNA gene predicted gene, 32458
D3Mit203 3 26936104 to 26936253 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 203
Cpgi13017 3 26936869 to 26937137 268 CpG island CpG island 13017
Gm37659 3 27012764 to 27012874 110 + pseudogene predicted gene, 37659
Tssr28599 3 27014412 to 27014416 4 + TSS region transcription start site region 28599
Gm44464 3 27026418 to 27026555 137 - miRNA gene predicted gene, 44464
Gm7558 3 27046789 to 27047953 1164 - pseudogene predicted gene 7558
Tssr28600 3 27064048 to 27064059 11 + TSS region transcription start site region 28600
Ect2 3 27097222 to 27153878 56656 - protein coding gene ect2 oncogene
Gm25152 3 27108982 to 27109095 113 + snoRNA gene predicted gene, 25152
Cpgi13018 3 27153403 to 27154207 804 CpG island CpG island 13018
Tssr32836 3 27153806 to 27153842 36 - TSS region transcription start site region 32836
Tssr32837 3 27153844 to 27153855 11 - TSS region transcription start site region 32837
Tssr32838 3 27153865 to 27153876 11 - TSS region transcription start site region 32838
Tssr28601 3 27154020 to 27154031 11 + TSS region transcription start site region 28601
1700125G22Rik 3 27154026 to 27157019 2993 + lincRNA gene RIKEN cDNA 1700125G22 gene
Tssr28602 3 27154032 to 27154060 28 + TSS region transcription start site region 28602
Cpgi13019 3 27182732 to 27183968 1236 CpG island CpG island 13019
Tssr28603 3 27182973 to 27182986 13 + TSS region transcription start site region 28603
Tssr28604 3 27182994 to 27183017 23 + TSS region transcription start site region 28604
Nceh1 3 27183004 to 27245266 62262 + protein coding gene neutral cholesterol ester hydrolase 1
Tssr28605 3 27183740 to 27183745 5 + TSS region transcription start site region 28605
Tssr28606 3 27183770 to 27183804 34 + TSS region transcription start site region 28606
Tssr28607 3 27188376 to 27188409 33 + TSS region transcription start site region 28607
Tssr28608 3 27188413 to 27188441 28 + TSS region transcription start site region 28608
Tssr28609 3 27188447 to 27188458 11 + TSS region transcription start site region 28609
Tssr32839 3 27191930 to 27191944 14 - TSS region transcription start site region 32839
Tssr32840 3 27191974 to 27191986 12 - TSS region transcription start site region 32840
Tssr28610 3 27192132 to 27192146 14 + TSS region transcription start site region 28610
Tssr32841 3 27194069 to 27194084 15 - TSS region transcription start site region 32841
Tssr32842 3 27194124 to 27194158 34 - TSS region transcription start site region 32842
Tssr32843 3 27194195 to 27194206 11 - TSS region transcription start site region 32843
Tssr28611 3 27194260 to 27194266 6 + TSS region transcription start site region 28611
Tssr28612 3 27194365 to 27194373 8 + TSS region transcription start site region 28612
Tssr28613 3 27194694 to 27194699 5 + TSS region transcription start site region 28613
D3Mit305 3 27198957 to 27199064 107 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 305
Tssr32844 3 27209835 to 27209839 4 - TSS region transcription start site region 32844
Tssr28614 3 27210464 to 27210479 15 + TSS region transcription start site region 28614
Tssr28615 3 27221137 to 27221141 4 + TSS region transcription start site region 28615
Tssr845 3 27222292 to 27222298 6 + TSS region transcription start site region 845
Tssr28616 3 27227290 to 27227302 12 + TSS region transcription start site region 28616
Tssr28617 3 27231502 to 27231522 20 + TSS region transcription start site region 28617
Tssr28618 3 27231537 to 27231554 17 + TSS region transcription start site region 28618
Tssr32845 3 27240568 to 27240573 5 - TSS region transcription start site region 32845
Tssr28619 3 27241421 to 27241432 11 + TSS region transcription start site region 28619
Tssr28620 3 27241547 to 27241564 17 + TSS region transcription start site region 28620
Tssr28621 3 27241577 to 27241615 38 + TSS region transcription start site region 28621
Tssr28622 3 27241620 to 27241665 45 + TSS region transcription start site region 28622
Tssr28623 3 27242783 to 27242794 11 + TSS region transcription start site region 28623