Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:23388103-25554144

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr28593 3 23461049 to 23461075 26 + TSS region transcription start site region 28593
4930412E21Rik 3 23461083 to 23521205 60122 + lincRNA gene RIKEN cDNA 4930412E21 gene
Naaladl2 3 23798103 to 25144144 1346041 - protein coding gene N-acetylated alpha-linked acidic dipeptidase-like 2
Gm18824 3 23930963 to 23931998 1035 + pseudogene predicted gene, 18824
Tssr32760 3 23939452 to 23939465 13 - TSS region transcription start site region 32760
Gm42191 3 23940024 to 23945930 5906 + lncRNA gene predicted gene, 42191
Tssr32761 3 24138128 to 24138129 1 - TSS region transcription start site region 32761
n-TLcag1 3 24163025 to 24163107 82 - tRNA gene nuclear encoded tRNA leucine 1 (anticodon CAG)
Del(3)1Lt 3 24170854 to 24282022 111168 cytogenetic marker deletion, Chr 3, Edward H Leiter 1
Gm7536 3 24333068 to 24333511 443 + pseudogene predicted gene 7536
D3Mit204 3 24336876 to 24337062 186 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 204
Tssr28594 3 24356781 to 24356789 8 + TSS region transcription start site region 28594
2900080J11Rik 3 24486711 to 24487487 776 unclassified gene RIKEN cDNA 2900080J11 gene
Tssr32762 3 24547112 to 24547116 4 - TSS region transcription start site region 32762
Gm24704 3 24562074 to 24562180 106 + snRNA gene predicted gene, 24704
Cfq8 3 24714068 to 31277954 6563886 QTL conditioned fear QTL 8
Gm24062 3 24718716 to 24718981 265 + unclassified non-coding RNA gene predicted gene, 24062
Tssr32763 3 24760324 to 24760328 4 - TSS region transcription start site region 32763
Tssr32764 3 24783561 to 24783607 46 - TSS region transcription start site region 32764
Tssr32765 3 24783608 to 24783621 13 - TSS region transcription start site region 32765
D3Mit238 3 24857212 to 24857360 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 238
Tssr32766 3 24858197 to 24858209 12 - TSS region transcription start site region 32766
Tssr32767 3 24858225 to 24858236 11 - TSS region transcription start site region 32767
Tssr32768 3 24955144 to 24955146 2 - TSS region transcription start site region 32768
Gm42774 3 25007423 to 25007705 282 - pseudogene predicted gene 42774
Cpgi13013 3 25143432 to 25144676 1244 CpG island CpG island 13013
Gm37136 3 25144068 to 25144261 193 + unclassified gene predicted gene, 37136
Tssr32769 3 25144182 to 25144248 66 - TSS region transcription start site region 32769
Tssr32770 3 25144249 to 25144270 21 - TSS region transcription start site region 32770
Tssr32771 3 25144278 to 25144330 52 - TSS region transcription start site region 32771
Gm38002 3 25184800 to 25184979 179 - pseudogene predicted gene, 38002
Gm10259 3 25211016 to 25212605 1589 - pseudogene predicted pseudogene 10259
Tssr28595 3 25330908 to 25330911 3 + TSS region transcription start site region 28595
Tssr32772 3 25431719 to 25431723 4 - TSS region transcription start site region 32772
Nlgn1 3 25431841 to 26332862 901021 - protein coding gene neuroligin 1
Tssr32773 3 25536794 to 25536795 1 - TSS region transcription start site region 32773
Gm24250 3 25546020 to 25546154 134 + rRNA gene predicted gene, 24250