Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:21088743-22828762

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm43160 3 21113583 to 21114003 420 - pseudogene predicted gene 43160
Gm29137 3 21268372 to 21269090 718 - lincRNA gene predicted gene 29137
Gm31610 3 21421792 to 21489656 67864 - lncRNA gene predicted gene, 31610
Thypr3 3 21471255 to 21471355 100 QTL thymocyte proliferative response 3
D3Mit304 3 21471255 to 21471355 100 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 304
Tssr32750 3 21489575 to 21489605 30 - TSS region transcription start site region 32750
Gm43675 3 21603810 to 21605508 1698 + pseudogene predicted gene 43675
Gm17935 3 21648387 to 21649158 771 + pseudogene predicted gene, 17935
Gm31693 3 21702815 to 21712460 9645 + lincRNA gene predicted gene, 31693
7530428D23Rik 3 21753596 to 21800796 47200 - lncRNA gene RIKEN cDNA 7530428D23 gene
Gm31813 3 21864168 to 21964346 100178 - lncRNA gene predicted gene, 31813
Tssr32751 3 21936036 to 21936044 8 - TSS region transcription start site region 32751
Cpgi13011 3 21936057 to 21936303 246 CpG island CpG island 13011
D3Mit176 3 21944274 to 21944417 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 176
Tssr28574 3 21953183 to 21953192 9 + TSS region transcription start site region 28574
Tssr28575 3 21955081 to 21955088 7 + TSS region transcription start site region 28575
Tssr32752 3 21958628 to 21958642 14 - TSS region transcription start site region 32752
Tssr32753 3 21958743 to 21958762 19 - TSS region transcription start site region 32753
Tssr28576 3 21962715 to 21962761 46 + TSS region transcription start site region 28576
Tssr32754 3 21987816 to 21987837 21 - TSS region transcription start site region 32754
Tssr32755 3 21988257 to 21988279 22 - TSS region transcription start site region 32755
Tssr32756 3 21988292 to 21988312 20 - TSS region transcription start site region 32756
Gm43674 3 21997678 to 21998468 790 - lincRNA gene predicted gene 43674
Gm43671 3 22021197 to 22021629 432 + pseudogene predicted gene 43671
Tssr842 3 22073326 to 22073328 2 + TSS region transcription start site region 842
Gm43672 3 22074412 to 22076142 1730 - lincRNA gene predicted gene 43672
Cpgi13012 3 22075593 to 22077500 1907 CpG island CpG island 13012
Tssr32757 3 22076073 to 22076104 31 - TSS region transcription start site region 32757
Tssr32758 3 22076138 to 22076207 69 - TSS region transcription start site region 32758
Tssr28577 3 22076644 to 22076681 37 + TSS region transcription start site region 28577
Tbl1xr1 3 22076652 to 22216594 139942 + protein coding gene transducin (beta)-like 1X-linked receptor 1
Tssr28578 3 22076725 to 22076797 72 + TSS region transcription start site region 28578
Tssr28579 3 22076830 to 22076895 65 + TSS region transcription start site region 28579
Tssr32759 3 22077478 to 22077499 21 - TSS region transcription start site region 32759
Tssr28580 3 22077550 to 22077554 4 + TSS region transcription start site region 28580
Tssr28581 3 22078766 to 22078770 4 + TSS region transcription start site region 28581
Gm5842 3 22080494 to 22081115 621 - pseudogene predicted gene 5842
Tssr28582 3 22081756 to 22081780 24 + TSS region transcription start site region 28582
Tssr28583 3 22087416 to 22087420 4 + TSS region transcription start site region 28583
Tssr843 3 22136666 to 22136670 4 + TSS region transcription start site region 843
Tssr28584 3 22154668 to 22154682 14 + TSS region transcription start site region 28584
Tssr28585 3 22155574 to 22155580 6 + TSS region transcription start site region 28585
Tssr28586 3 22210634 to 22210652 18 + TSS region transcription start site region 28586
Tssr28587 3 22211319 to 22211332 13 + TSS region transcription start site region 28587
Tssr28588 3 22211353 to 22211362 9 + TSS region transcription start site region 28588
Tssr28589 3 22214509 to 22214533 24 + TSS region transcription start site region 28589
Tssr28590 3 22251369 to 22251374 5 + TSS region transcription start site region 28590
Rprl2 3 22251370 to 22251607 237 + RNase P RNA gene ribonuclease P RNA-like 2
Gm38324 3 22285081 to 22297830 12749 - lincRNA gene predicted gene, 38324
Tssr28591 3 22331467 to 22331503 36 + TSS region transcription start site region 28591
Gm37636 3 22348862 to 22349612 750 - pseudogene predicted gene, 37636
Tssr28592 3 22398922 to 22398923 1 + TSS region transcription start site region 28592
Gm26354 3 22409923 to 22410051 128 - snoRNA gene predicted gene, 26354
Spin3-ps 3 22525238 to 22526007 769 + pseudogene spindlin family, member 3, pseudogene
Gm37889 3 22812207 to 22812457 250 + unclassified gene predicted gene, 37889
D3Mit329 3 22827979 to 22828100 121 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 329