Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:19887815-23527460

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187 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi13006 3 19894558 to 19895632 1074 CpG island CpG island 13006
Tssr28531 3 19894855 to 19894894 39 + TSS region transcription start site region 28531
4632415L05Rik 3 19894886 to 19898984 4098 + lincRNA gene RIKEN cDNA 4632415L05 gene
Tssr28532 3 19894903 to 19894914 11 + TSS region transcription start site region 28532
Tssr28533 3 19895096 to 19895124 28 + TSS region transcription start site region 28533
Gm37523 3 19913796 to 19914355 559 + pseudogene predicted gene, 37523
Gm17771 3 19934294 to 19935380 1086 + pseudogene predicted gene, 17771
Gm42190 3 19945154 to 19953954 8800 - lncRNA gene predicted gene, 42190
Tssr28534 3 19956925 to 19956930 5 + TSS region transcription start site region 28534
Tssr28535 3 19956986 to 19956993 7 + TSS region transcription start site region 28535
Tssr28536 3 19957037 to 19957073 36 + TSS region transcription start site region 28536
Cp 3 19957054 to 20009145 52091 + protein coding gene ceruloplasmin
Tssr28537 3 19957088 to 19957114 26 + TSS region transcription start site region 28537
Tssr28538 3 19957119 to 19957131 12 + TSS region transcription start site region 28538
Tssr28539 3 19957170 to 19957179 9 + TSS region transcription start site region 28539
Tssr28540 3 19957215 to 19957224 9 + TSS region transcription start site region 28540
Tssr28541 3 19957240 to 19957263 23 + TSS region transcription start site region 28541
Tssr28542 3 19957341 to 19957356 15 + TSS region transcription start site region 28542
Tssr28543 3 19966345 to 19966356 11 + TSS region transcription start site region 28543
Tssr28544 3 19966363 to 19966383 20 + TSS region transcription start site region 28544
Tssr28545 3 19970915 to 19970924 9 + TSS region transcription start site region 28545
Tssr28546 3 19971012 to 19971029 17 + TSS region transcription start site region 28546
Tssr28547 3 19972625 to 19972636 11 + TSS region transcription start site region 28547
Tssr28548 3 19974966 to 19974979 13 + TSS region transcription start site region 28548
Tssr28549 3 19980589 to 19980598 9 + TSS region transcription start site region 28549
Tssr839 3 19985611 to 19985623 12 + TSS region transcription start site region 839
Tssr28550 3 19985632 to 19985643 11 + TSS region transcription start site region 28550
Tssr28551 3 19989055 to 19989069 14 + TSS region transcription start site region 28551
Tssr28552 3 19989134 to 19989149 15 + TSS region transcription start site region 28552
Tssr28553 3 19989151 to 19989164 13 + TSS region transcription start site region 28553
Tssr28554 3 19989176 to 19989191 15 + TSS region transcription start site region 28554
Tssr28555 3 19992623 to 19992639 16 + TSS region transcription start site region 28555
Tssr28556 3 19992775 to 19992793 18 + TSS region transcription start site region 28556
Tssr840 3 19992796 to 19992817 21 + TSS region transcription start site region 840
Hps3 3 19995945 to 20035315 39370 - protein coding gene HPS3, biogenesis of lysosomal organelles complex 2 subunit 1
Cpgi13007 3 20034835 to 20035529 694 CpG island CpG island 13007
Tssr32705 3 20035269 to 20035283 14 - TSS region transcription start site region 32705
Tssr32706 3 20035285 to 20035325 40 - TSS region transcription start site region 32706
D830024F11Rik 3 20056574 to 20058155 1581 unclassified gene RIKEN cDNA D830024F11 gene
Cpgi13008 3 20057507 to 20058182 675 CpG island CpG island 13008
Tssr28557 3 20057802 to 20057857 55 + TSS region transcription start site region 28557
Hltf 3 20057811 to 20118490 60679 + protein coding gene helicase-like transcription factor
Tssr28558 3 20057878 to 20057885 7 + TSS region transcription start site region 28558
Tssr28559 3 20058336 to 20058352 16 + TSS region transcription start site region 28559
Tssr28560 3 20062647 to 20062659 12 + TSS region transcription start site region 28560
Tssr28561 3 20105030 to 20105042 12 + TSS region transcription start site region 28561
Gyg 3 20122084 to 20155266 33182 - protein coding gene glycogenin
Tssr32707 3 20122473 to 20122478 5 - TSS region transcription start site region 32707
Tssr32708 3 20132513 to 20132516 3 - TSS region transcription start site region 32708
Tssr32709 3 20150600 to 20150617 17 - TSS region transcription start site region 32709
Cpgi13009 3 20154408 to 20155273 865 CpG island CpG island 13009
Tssr841 3 20155056 to 20155072 16 - TSS region transcription start site region 841
Tssr32710 3 20155090 to 20155122 32 - TSS region transcription start site region 32710
Tssr28562 3 20198131 to 20198171 40 + TSS region transcription start site region 28562
Cpa3 3 20215620 to 20242181 26561 - protein coding gene carboxypeptidase A3, mast cell
Mir7007 3 20222290 to 20222359 69 - miRNA gene microRNA 7007
Gm31320 3 20222293 to 20229475 7182 + lncRNA gene predicted gene, 31320
Tssr28563 3 20223101 to 20223145 44 + TSS region transcription start site region 28563
Gm7428 3 20223771 to 20224687 916 - pseudogene predicted gene 7428
Tssr32711 3 20242158 to 20242167 9 - TSS region transcription start site region 32711
Tssr32712 3 20242173 to 20242187 14 - TSS region transcription start site region 32712
Tssr32713 3 20242189 to 20242198 9 - TSS region transcription start site region 32713
Cpb1 3 20249479 to 20275733 26254 - protein coding gene carboxypeptidase B1 (tissue)
Tssr32714 3 20249512 to 20249533 21 - TSS region transcription start site region 32714
Tssr32715 3 20249545 to 20249555 10 - TSS region transcription start site region 32715
Tssr32716 3 20249556 to 20249581 25 - TSS region transcription start site region 32716
Tssr28564 3 20249559 to 20249587 28 + TSS region transcription start site region 28564
Tssr32717 3 20249609 to 20249635 26 - TSS region transcription start site region 32717
Tssr32718 3 20249645 to 20249713 68 - TSS region transcription start site region 32718
Tssr32719 3 20249743 to 20249805 62 - TSS region transcription start site region 32719
Tssr32720 3 20249814 to 20249840 26 - TSS region transcription start site region 32720
Tssr28565 3 20251956 to 20251993 37 + TSS region transcription start site region 28565
Tssr32721 3 20251982 to 20252022 40 - TSS region transcription start site region 32721
Tssr32722 3 20259504 to 20259507 3 - TSS region transcription start site region 32722
Tssr32723 3 20262104 to 20262106 2 - TSS region transcription start site region 32723
Tssr28566 3 20262406 to 20262444 38 + TSS region transcription start site region 28566
Tssr32724 3 20262444 to 20262530 86 - TSS region transcription start site region 32724
Tssr32725 3 20262563 to 20262566 3 - TSS region transcription start site region 32725
Tssr32726 3 20262572 to 20262581 9 - TSS region transcription start site region 32726
Tssr32727 3 20262599 to 20262619 20 - TSS region transcription start site region 32727
Tssr32728 3 20263534 to 20263597 63 - TSS region transcription start site region 32728
Tssr32729 3 20263698 to 20263703 5 - TSS region transcription start site region 32729
Tssr32730 3 20263707 to 20263730 23 - TSS region transcription start site region 32730
Tssr32731 3 20263748 to 20263763 15 - TSS region transcription start site region 32731
Tssr32732 3 20263768 to 20263793 25 - TSS region transcription start site region 32732
Tssr32733 3 20265145 to 20265148 3 - TSS region transcription start site region 32733
Tssr32734 3 20265379 to 20265418 39 - TSS region transcription start site region 32734
Tssr32735 3 20266258 to 20266280 22 - TSS region transcription start site region 32735
Tssr32736 3 20266284 to 20266295 11 - TSS region transcription start site region 32736
Tssr32737 3 20266297 to 20266330 33 - TSS region transcription start site region 32737
Tssr28567 3 20266415 to 20266446 31 + TSS region transcription start site region 28567
Tssr32738 3 20266450 to 20266489 39 - TSS region transcription start site region 32738
Tssr32739 3 20266490 to 20266500 10 - TSS region transcription start site region 32739
Tssr32740 3 20266508 to 20266520 12 - TSS region transcription start site region 32740
Tssr32741 3 20266523 to 20266524 1 - TSS region transcription start site region 32741
Tssr32742 3 20270293 to 20270327 34 - TSS region transcription start site region 32742
Tssr32743 3 20270328 to 20270365 37 - TSS region transcription start site region 32743
Tssr32744 3 20274854 to 20274860 6 - TSS region transcription start site region 32744
Tssr28568 3 20275420 to 20275436 16 + TSS region transcription start site region 28568
Tssr28569 3 20275445 to 20275456 11 + TSS region transcription start site region 28569
Tssr32745 3 20275448 to 20275503 55 - TSS region transcription start site region 32745
Tssr32746 3 20275659 to 20275675 16 - TSS region transcription start site region 32746
Gm46797 3 20276709 to 20286053 9344 - lncRNA gene predicted gene, 46797
Tssr28570 3 20306934 to 20306939 5 + TSS region transcription start site region 28570
Tssr28571 3 20308371 to 20308378 7 + TSS region transcription start site region 28571
Tssr28572 3 20308399 to 20308420 21 + TSS region transcription start site region 28572
Gm43525 3 20308407 to 20309915 1508 + lincRNA gene predicted gene 43525
Agtr1b 3 20314473 to 20367177 52704 - protein coding gene angiotensin II receptor, type 1b
Cpgi13010 3 20315890 to 20316192 302 CpG island CpG island 13010
Tssr32747 3 20367170 to 20367184 14 - TSS region transcription start site region 32747
Gm18426 3 20391013 to 20391971 958 - pseudogene predicted gene, 18426
Gm42594 3 20404665 to 20404910 245 + unclassified gene predicted gene 42594
Gm31466 3 20503098 to 20506208 3110 - lincRNA gene predicted gene, 31466
Tssr32748 3 20506185 to 20506210 25 - TSS region transcription start site region 32748
Tssr32749 3 20506219 to 20506225 6 - TSS region transcription start site region 32749
Gm18491 3 20782470 to 20784063 1593 - pseudogene predicted gene, 18491
Gm38323 3 20787937 to 20788146 209 + pseudogene predicted gene, 38323
Gm18493 3 20804490 to 20806086 1596 + pseudogene predicted gene, 18493
Gm31552 3 20816385 to 20822361 5976 - lncRNA gene predicted gene, 31552
Gm37480 3 20819621 to 20823689 4068 + unclassified gene predicted gene, 37480
Tssr28573 3 20980292 to 20980294 2 + TSS region transcription start site region 28573
Gm7488 3 21049565 to 21050248 683 + pseudogene predicted gene 7488
Gm43160 3 21113583 to 21114003 420 - pseudogene predicted gene 43160
Gm29137 3 21268372 to 21269090 718 - lincRNA gene predicted gene 29137
Gm31610 3 21421792 to 21489656 67864 - lncRNA gene predicted gene, 31610
Thypr3 3 21471255 to 21471355 100 QTL thymocyte proliferative response 3
D3Mit304 3 21471255 to 21471355 100 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 304
Tssr32750 3 21489575 to 21489605 30 - TSS region transcription start site region 32750
Gm43675 3 21603810 to 21605508 1698 + pseudogene predicted gene 43675
Gm17935 3 21648387 to 21649158 771 + pseudogene predicted gene, 17935
Gm31693 3 21702815 to 21712460 9645 + lincRNA gene predicted gene, 31693
7530428D23Rik 3 21753596 to 21800796 47200 - lncRNA gene RIKEN cDNA 7530428D23 gene
Gm31813 3 21864168 to 21964346 100178 - lncRNA gene predicted gene, 31813
Tssr32751 3 21936036 to 21936044 8 - TSS region transcription start site region 32751
Cpgi13011 3 21936057 to 21936303 246 CpG island CpG island 13011
D3Mit176 3 21944274 to 21944417 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 176
Tssr28574 3 21953183 to 21953192 9 + TSS region transcription start site region 28574
Tssr28575 3 21955081 to 21955088 7 + TSS region transcription start site region 28575
Tssr32752 3 21958628 to 21958642 14 - TSS region transcription start site region 32752
Tssr32753 3 21958743 to 21958762 19 - TSS region transcription start site region 32753
Tssr28576 3 21962715 to 21962761 46 + TSS region transcription start site region 28576
Tssr32754 3 21987816 to 21987837 21 - TSS region transcription start site region 32754
Tssr32755 3 21988257 to 21988279 22 - TSS region transcription start site region 32755
Tssr32756 3 21988292 to 21988312 20 - TSS region transcription start site region 32756
Gm43674 3 21997678 to 21998468 790 - lincRNA gene predicted gene 43674
Gm43671 3 22021197 to 22021629 432 + pseudogene predicted gene 43671
Tssr842 3 22073326 to 22073328 2 + TSS region transcription start site region 842
Gm43672 3 22074412 to 22076142 1730 - lincRNA gene predicted gene 43672
Cpgi13012 3 22075593 to 22077500 1907 CpG island CpG island 13012
Tssr32757 3 22076073 to 22076104 31 - TSS region transcription start site region 32757
Tssr32758 3 22076138 to 22076207 69 - TSS region transcription start site region 32758
Tssr28577 3 22076644 to 22076681 37 + TSS region transcription start site region 28577
Tbl1xr1 3 22076652 to 22216594 139942 + protein coding gene transducin (beta)-like 1X-linked receptor 1
Tssr28578 3 22076725 to 22076797 72 + TSS region transcription start site region 28578
Tssr28579 3 22076830 to 22076895 65 + TSS region transcription start site region 28579
Tssr32759 3 22077478 to 22077499 21 - TSS region transcription start site region 32759
Tssr28580 3 22077550 to 22077554 4 + TSS region transcription start site region 28580
Tssr28581 3 22078766 to 22078770 4 + TSS region transcription start site region 28581
Gm5842 3 22080494 to 22081115 621 - pseudogene predicted gene 5842
Tssr28582 3 22081756 to 22081780 24 + TSS region transcription start site region 28582
Tssr28583 3 22087416 to 22087420 4 + TSS region transcription start site region 28583
Tssr843 3 22136666 to 22136670 4 + TSS region transcription start site region 843
Tssr28584 3 22154668 to 22154682 14 + TSS region transcription start site region 28584
Tssr28585 3 22155574 to 22155580 6 + TSS region transcription start site region 28585
Tssr28586 3 22210634 to 22210652 18 + TSS region transcription start site region 28586
Tssr28587 3 22211319 to 22211332 13 + TSS region transcription start site region 28587
Tssr28588 3 22211353 to 22211362 9 + TSS region transcription start site region 28588
Tssr28589 3 22214509 to 22214533 24 + TSS region transcription start site region 28589
Tssr28590 3 22251369 to 22251374 5 + TSS region transcription start site region 28590
Rprl2 3 22251370 to 22251607 237 + RNase P RNA gene ribonuclease P RNA-like 2
Gm38324 3 22285081 to 22297830 12749 - lincRNA gene predicted gene, 38324
Tssr28591 3 22331467 to 22331503 36 + TSS region transcription start site region 28591
Gm37636 3 22348862 to 22349612 750 - pseudogene predicted gene, 37636
Tssr28592 3 22398922 to 22398923 1 + TSS region transcription start site region 28592
Gm26354 3 22409923 to 22410051 128 - snoRNA gene predicted gene, 26354
Spin3-ps 3 22525238 to 22526007 769 + pseudogene spindlin family, member 3, pseudogene
Gm37889 3 22812207 to 22812457 250 + unclassified gene predicted gene, 37889
D3Mit329 3 22827979 to 22828100 121 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 329
D3Mit267 3 22844494 to 22844642 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 267
D3Mit132 3 22893416 to 22893516 100 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 132
D3Mit132.1 3 22893490 to 22893647 157 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 132.1
Gm36983 3 23072419 to 23074921 2502 + pseudogene predicted gene, 36983
Gm37021 3 23085975 to 23088949 2974 + lincRNA gene predicted gene, 37021
D3Mit270 3 23337903 to 23337997 94 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 270
Gm37492 3 23374942 to 23375317 375 - pseudogene predicted gene, 37492
Tssr28593 3 23461049 to 23461075 26 + TSS region transcription start site region 28593
4930412E21Rik 3 23461083 to 23521205 60122 + lincRNA gene RIKEN cDNA 4930412E21 gene