Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:19781363-20151383

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D3Mit165 3 19786873 to 19787067 194 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 165
D3Mit236 3 19786880 to 19787091 211 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 236
Gm2148 3 19880872 to 19881746 874 - pseudogene predicted gene 2148
Cpgi13006 3 19894558 to 19895632 1074 CpG island CpG island 13006
Tssr28531 3 19894855 to 19894894 39 + TSS region transcription start site region 28531
4632415L05Rik 3 19894886 to 19898984 4098 + lincRNA gene RIKEN cDNA 4632415L05 gene
Tssr28532 3 19894903 to 19894914 11 + TSS region transcription start site region 28532
Tssr28533 3 19895096 to 19895124 28 + TSS region transcription start site region 28533
Gm37523 3 19913796 to 19914355 559 + pseudogene predicted gene, 37523
Gm17771 3 19934294 to 19935380 1086 + pseudogene predicted gene, 17771
Gm42190 3 19945154 to 19953954 8800 - lncRNA gene predicted gene, 42190
Tssr28534 3 19956925 to 19956930 5 + TSS region transcription start site region 28534
Tssr28535 3 19956986 to 19956993 7 + TSS region transcription start site region 28535
Tssr28536 3 19957037 to 19957073 36 + TSS region transcription start site region 28536
Cp 3 19957054 to 20009145 52091 + protein coding gene ceruloplasmin
Tssr28537 3 19957088 to 19957114 26 + TSS region transcription start site region 28537
Tssr28538 3 19957119 to 19957131 12 + TSS region transcription start site region 28538
Tssr28539 3 19957170 to 19957179 9 + TSS region transcription start site region 28539
Tssr28540 3 19957215 to 19957224 9 + TSS region transcription start site region 28540
Tssr28541 3 19957240 to 19957263 23 + TSS region transcription start site region 28541
Tssr28542 3 19957341 to 19957356 15 + TSS region transcription start site region 28542
Tssr28543 3 19966345 to 19966356 11 + TSS region transcription start site region 28543
Tssr28544 3 19966363 to 19966383 20 + TSS region transcription start site region 28544
Tssr28545 3 19970915 to 19970924 9 + TSS region transcription start site region 28545
Tssr28546 3 19971012 to 19971029 17 + TSS region transcription start site region 28546
Tssr28547 3 19972625 to 19972636 11 + TSS region transcription start site region 28547
Tssr28548 3 19974966 to 19974979 13 + TSS region transcription start site region 28548
Tssr28549 3 19980589 to 19980598 9 + TSS region transcription start site region 28549
Tssr839 3 19985611 to 19985623 12 + TSS region transcription start site region 839
Tssr28550 3 19985632 to 19985643 11 + TSS region transcription start site region 28550
Tssr28551 3 19989055 to 19989069 14 + TSS region transcription start site region 28551
Tssr28552 3 19989134 to 19989149 15 + TSS region transcription start site region 28552
Tssr28553 3 19989151 to 19989164 13 + TSS region transcription start site region 28553
Tssr28554 3 19989176 to 19989191 15 + TSS region transcription start site region 28554
Tssr28555 3 19992623 to 19992639 16 + TSS region transcription start site region 28555
Tssr28556 3 19992775 to 19992793 18 + TSS region transcription start site region 28556
Tssr840 3 19992796 to 19992817 21 + TSS region transcription start site region 840
Hps3 3 19995945 to 20035315 39370 - protein coding gene HPS3, biogenesis of lysosomal organelles complex 2 subunit 1
Cpgi13007 3 20034835 to 20035529 694 CpG island CpG island 13007
Tssr32705 3 20035269 to 20035283 14 - TSS region transcription start site region 32705
Tssr32706 3 20035285 to 20035325 40 - TSS region transcription start site region 32706
D830024F11Rik 3 20056574 to 20058155 1581 unclassified gene RIKEN cDNA D830024F11 gene
Cpgi13008 3 20057507 to 20058182 675 CpG island CpG island 13008
Tssr28557 3 20057802 to 20057857 55 + TSS region transcription start site region 28557
Hltf 3 20057811 to 20118490 60679 + protein coding gene helicase-like transcription factor
Tssr28558 3 20057878 to 20057885 7 + TSS region transcription start site region 28558
Tssr28559 3 20058336 to 20058352 16 + TSS region transcription start site region 28559
Tssr28560 3 20062647 to 20062659 12 + TSS region transcription start site region 28560
Tssr28561 3 20105030 to 20105042 12 + TSS region transcription start site region 28561
Gyg 3 20122084 to 20155266 33182 - protein coding gene glycogenin
Tssr32707 3 20122473 to 20122478 5 - TSS region transcription start site region 32707
Tssr32708 3 20132513 to 20132516 3 - TSS region transcription start site region 32708
Tssr32709 3 20150600 to 20150617 17 - TSS region transcription start site region 32709