Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:19573566-19679477

18 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Dnajc5b	3	19508595 to 19610862	102267	+	protein coding gene	DnaJ heat shock protein family (Hsp40) member C5 beta
Gm6141	3	19584791 to 19585538	747	+	pseudogene	predicted pseudogene 6141
1700064H15Rik	3	19623566 to 19629477	5911	-	protein coding gene	RIKEN cDNA 1700064H15 gene
Cpgi13003	3	19627914 to 19629077	1163		CpG island	CpG island 13003
n-TRacg3	3	19627959 to 19628031	72	-	tRNA gene	nuclear encoded tRNA arginine 3 (anticodon ACG)
n-TYgta1	3	19628355 to 19628447	92	+	tRNA gene	nuclear encoded tRNA tyrosine 1 (anticodon GTA)
Tssr32702	3	19628669 to 19628685	16	-	TSS region	transcription start site region 32702
n-TYgta2	3	19628782 to 19628870	88	+	tRNA gene	nuclear encoded tRNA tyrosine 2 (anticodon GTA)
n-TAagc14	3	19628995 to 19629067	72	+	tRNA gene	nuclear encoded tRNA alanine 14 (anticodon AGC)
Cpgi13004	3	19629850 to 19630071	221		CpG island	CpG island 13004
Tssr32703	3	19644359 to 19644364	5	-	TSS region	transcription start site region 32703
Tssr28518	3	19644452 to 19644466	14	+	TSS region	transcription start site region 28518
Tssr28519	3	19644467 to 19644474	7	+	TSS region	transcription start site region 28519
Trim55	3	19644474 to 19692421	47947	+	protein coding gene	tripartite motif-containing 55
Tssr28520	3	19644517 to 19644529	12	+	TSS region	transcription start site region 28520
Tssr28521	3	19644568 to 19644573	5	+	TSS region	transcription start site region 28521
Tssr28522	3	19644576 to 19644589	13	+	TSS region	transcription start site region 28522
Tssr28523	3	19679033 to 19679042	9	+	TSS region	transcription start site region 28523