Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:19308646-19708657

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pde7a 3 19223108 to 19311322 88214 - protein coding gene phosphodiesterase 7A
Cpgi13002 3 19310444 to 19311988 1544 CpG island CpG island 13002
Tssr28510 3 19310692 to 19310705 13 + TSS region transcription start site region 28510
Tssr28511 3 19310848 to 19310859 11 + TSS region transcription start site region 28511
Tssr32696 3 19311243 to 19311263 20 - TSS region transcription start site region 32696
Tssr32697 3 19311269 to 19311314 45 - TSS region transcription start site region 32697
Tssr32698 3 19311333 to 19311344 11 - TSS region transcription start site region 32698
Tssr32699 3 19311349 to 19311378 29 - TSS region transcription start site region 32699
Tssr32700 3 19311389 to 19311403 14 - TSS region transcription start site region 32700
Tssr28512 3 19311440 to 19311473 33 + TSS region transcription start site region 28512
Tssr28513 3 19311481 to 19311495 14 + TSS region transcription start site region 28513
3110037C07Rik 3 19311659 to 19313734 2075 unclassified gene RIKEN cDNA 3110037C07 gene
Tssr32701 3 19312192 to 19312213 21 - TSS region transcription start site region 32701
Gm22282 3 19330773 to 19331084 311 + unclassified non-coding RNA gene predicted gene, 22282
D3Mit328 3 19368403 to 19368527 124 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 328
Gm42188 3 19374179 to 19387634 13455 + lncRNA gene predicted gene, 42188
Tssr28514 3 19508589 to 19508600 11 + TSS region transcription start site region 28514
Dnajc5b 3 19508595 to 19610862 102267 + protein coding gene DnaJ heat shock protein family (Hsp40) member C5 beta
Tssr28515 3 19508606 to 19508641 35 + TSS region transcription start site region 28515
Tssr28516 3 19508646 to 19508657 11 + TSS region transcription start site region 28516
Tssr28517 3 19560250 to 19560260 10 + TSS region transcription start site region 28517
Gm23330 3 19560253 to 19560416 163 + snRNA gene predicted gene, 23330
Tssr838 3 19561779 to 19561784 5 + TSS region transcription start site region 838
Gm6141 3 19584791 to 19585538 747 + pseudogene predicted pseudogene 6141
1700064H15Rik 3 19623566 to 19629477 5911 - protein coding gene RIKEN cDNA 1700064H15 gene
Cpgi13003 3 19627914 to 19629077 1163 CpG island CpG island 13003
n-TRacg3 3 19627959 to 19628031 72 - tRNA gene nuclear encoded tRNA arginine 3 (anticodon ACG)
n-TYgta1 3 19628355 to 19628447 92 + tRNA gene nuclear encoded tRNA tyrosine 1 (anticodon GTA)
Tssr32702 3 19628669 to 19628685 16 - TSS region transcription start site region 32702
n-TYgta2 3 19628782 to 19628870 88 + tRNA gene nuclear encoded tRNA tyrosine 2 (anticodon GTA)
n-TAagc14 3 19628995 to 19629067 72 + tRNA gene nuclear encoded tRNA alanine 14 (anticodon AGC)
Cpgi13004 3 19629850 to 19630071 221 CpG island CpG island 13004
Tssr32703 3 19644359 to 19644364 5 - TSS region transcription start site region 32703
Tssr28518 3 19644452 to 19644466 14 + TSS region transcription start site region 28518
Tssr28519 3 19644467 to 19644474 7 + TSS region transcription start site region 28519
Trim55 3 19644474 to 19692421 47947 + protein coding gene tripartite motif-containing 55
Tssr28520 3 19644517 to 19644529 12 + TSS region transcription start site region 28520
Tssr28521 3 19644568 to 19644573 5 + TSS region transcription start site region 28521
Tssr28522 3 19644576 to 19644589 13 + TSS region transcription start site region 28522
Tssr28523 3 19679033 to 19679042 9 + TSS region transcription start site region 28523
D3Mit91 3 19681159 to 19681307 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 91
BC002189 3 19685971 to 19686568 597 + sense intronic lncRNA gene cDNA sequence BC002189
Tssr28524 3 19687080 to 19687083 3 + TSS region transcription start site region 28524
Tssr28525 3 19689811 to 19689823 12 + TSS region transcription start site region 28525
Tssr28526 3 19690017 to 19690020 3 + TSS region transcription start site region 28526
Tssr28527 3 19691932 to 19691944 12 + TSS region transcription start site region 28527
Tssr28528 3 19692015 to 19692026 11 + TSS region transcription start site region 28528
Tssr28529 3 19692494 to 19692520 26 + TSS region transcription start site region 28529
Crh 3 19693401 to 19695396 1995 - protein coding gene corticotropin releasing hormone
Cpgi13005 3 19693973 to 19695160 1187 CpG island CpG island 13005
Gm42189 3 19694486 to 19707354 12868 + lncRNA gene predicted gene, 42189
Tssr32704 3 19695325 to 19695336 11 - TSS region transcription start site region 32704
Tssr28530 3 19707417 to 19707418 1 + TSS region transcription start site region 28530
Gm18864 3 19708270 to 19709320 1050 - pseudogene predicted gene, 18864