Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:18660489-19620510

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr28499 3 18695666 to 18695674 8 + TSS region transcription start site region 28499
Gm30341 3 18753077 to 18753365 288 + pseudogene predicted gene, 30341
Tssr32685 3 19043570 to 19043584 14 - TSS region transcription start site region 32685
Armc1 3 19132144 to 19163090 30946 - protein coding gene armadillo repeat containing 1
Tssr32686 3 19140489 to 19140510 21 - TSS region transcription start site region 32686
Gm37979 3 19143188 to 19143899 711 - unclassified gene predicted gene, 37979
Cpgi13000 3 19162411 to 19163398 987 CpG island CpG island 13000
Tssr32687 3 19163011 to 19163085 74 - TSS region transcription start site region 32687
Tssr28500 3 19187302 to 19187316 14 + TSS region transcription start site region 28500
Tssr28501 3 19187321 to 19187351 30 + TSS region transcription start site region 28501
Mtfr1 3 19187327 to 19220817 33490 + protein coding gene mitochondrial fission regulator 1
Tssr28502 3 19187359 to 19187362 3 + TSS region transcription start site region 28502
Tssr28503 3 19187366 to 19187373 7 + TSS region transcription start site region 28503
Cpgi13001 3 19187755 to 19188692 937 CpG island CpG island 13001
Tssr28504 3 19188085 to 19188098 13 + TSS region transcription start site region 28504
Tssr28505 3 19188099 to 19188108 9 + TSS region transcription start site region 28505
Tssr28506 3 19188112 to 19188122 10 + TSS region transcription start site region 28506
Tssr28507 3 19188214 to 19188225 11 + TSS region transcription start site region 28507
Tssr28508 3 19188226 to 19188273 47 + TSS region transcription start site region 28508
Tssr28509 3 19188288 to 19188293 5 + TSS region transcription start site region 28509
Tssr837 3 19217651 to 19217653 2 + TSS region transcription start site region 837
Pde7a 3 19223108 to 19311322 88214 - protein coding gene phosphodiesterase 7A
Gm16093 3 19227780 to 19240987 13207 + antisense lncRNA gene predicted gene 16093
Tssr32688 3 19238480 to 19238485 5 - TSS region transcription start site region 32688
Tssr32689 3 19238877 to 19238898 21 - TSS region transcription start site region 32689
Tssr32690 3 19264927 to 19264939 12 - TSS region transcription start site region 32690
Tssr32691 3 19264959 to 19264974 15 - TSS region transcription start site region 32691
Tssr32692 3 19264997 to 19265005 8 - TSS region transcription start site region 32692
Tssr32693 3 19265007 to 19265023 16 - TSS region transcription start site region 32693
Tssr32694 3 19265096 to 19265109 13 - TSS region transcription start site region 32694
Tssr32695 3 19290036 to 19290041 5 - TSS region transcription start site region 32695
Cpgi13002 3 19310444 to 19311988 1544 CpG island CpG island 13002
Tssr28510 3 19310692 to 19310705 13 + TSS region transcription start site region 28510
Tssr28511 3 19310848 to 19310859 11 + TSS region transcription start site region 28511
Tssr32696 3 19311243 to 19311263 20 - TSS region transcription start site region 32696
Tssr32697 3 19311269 to 19311314 45 - TSS region transcription start site region 32697
Tssr32698 3 19311333 to 19311344 11 - TSS region transcription start site region 32698
Tssr32699 3 19311349 to 19311378 29 - TSS region transcription start site region 32699
Tssr32700 3 19311389 to 19311403 14 - TSS region transcription start site region 32700
Tssr28512 3 19311440 to 19311473 33 + TSS region transcription start site region 28512
Tssr28513 3 19311481 to 19311495 14 + TSS region transcription start site region 28513
3110037C07Rik 3 19311659 to 19313734 2075 unclassified gene RIKEN cDNA 3110037C07 gene
Tssr32701 3 19312192 to 19312213 21 - TSS region transcription start site region 32701
Gm22282 3 19330773 to 19331084 311 + unclassified non-coding RNA gene predicted gene, 22282
D3Mit328 3 19368403 to 19368527 124 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 328
Gm42188 3 19374179 to 19387634 13455 + lncRNA gene predicted gene, 42188
Tssr28514 3 19508589 to 19508600 11 + TSS region transcription start site region 28514
Dnajc5b 3 19508595 to 19610862 102267 + protein coding gene DnaJ heat shock protein family (Hsp40) member C5 beta
Tssr28515 3 19508606 to 19508641 35 + TSS region transcription start site region 28515
Tssr28516 3 19508646 to 19508657 11 + TSS region transcription start site region 28516
Tssr28517 3 19560250 to 19560260 10 + TSS region transcription start site region 28517
Gm23330 3 19560253 to 19560416 163 + snRNA gene predicted gene, 23330
Tssr838 3 19561779 to 19561784 5 + TSS region transcription start site region 838
Gm6141 3 19584791 to 19585538 747 + pseudogene predicted pseudogene 6141