Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:17999475-19227380

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr28491 3 18008741 to 18008748 7 + TSS region transcription start site region 28491
Gm5844 3 18008806 to 18010996 2190 + pseudogene predicted gene 5844
Cpgi12997 3 18052626 to 18052803 177 CpG island CpG island 12997
Tssr28492 3 18054150 to 18054162 12 + TSS region transcription start site region 28492
Tssr28493 3 18054233 to 18054249 16 + TSS region transcription start site region 28493
Tssr28494 3 18054258 to 18054267 9 + TSS region transcription start site region 28494
Bhlhe22 3 18054325 to 18057514 3189 + protein coding gene basic helix-loop-helix family, member e22
Tssr28495 3 18054392 to 18054407 15 + TSS region transcription start site region 28495
Cpgi12998 3 18054418 to 18056039 1621 CpG island CpG island 12998
Tssr28496 3 18054496 to 18054515 19 + TSS region transcription start site region 28496
Gm23726 3 18069326 to 18069392 66 + miRNA gene predicted gene, 23726
Cyp7b1 3 18071950 to 18243338 171388 - protein coding gene cytochrome P450, family 7, subfamily b, polypeptide 1
Tssr32679 3 18097024 to 18097026 2 - TSS region transcription start site region 32679
Tssr32680 3 18125716 to 18125720 4 - TSS region transcription start site region 32680
Tssr28497 3 18176340 to 18176341 1 + TSS region transcription start site region 28497
Gm23686 3 18177462 to 18177625 163 - snRNA gene predicted gene, 23686
Tssr32681 3 18177630 to 18177636 6 - TSS region transcription start site region 32681
Tssr32682 3 18228615 to 18228624 9 - TSS region transcription start site region 32682
Cpgi12999 3 18242848 to 18243572 724 CpG island CpG island 12999
Tssr836 3 18243214 to 18243252 38 - TSS region transcription start site region 836
Tssr32683 3 18243267 to 18243276 9 - TSS region transcription start site region 32683
Tssr32684 3 18243289 to 18243349 60 - TSS region transcription start site region 32684
Gm43834 3 18299310 to 18304139 4829 + unclassified gene predicted gene 43834
Gm30667 3 18371749 to 18461341 89592 - lincRNA gene predicted gene, 30667
4930433B08Rik 3 18468287 to 18480477 12190 - lincRNA gene RIKEN cDNA 4930433B08 gene
Tssr28498 3 18533512 to 18533515 3 + TSS region transcription start site region 28498
Gm6369 3 18533875 to 18534286 411 + pseudogene predicted gene 6369
Pgk1-ps3 3 18564538 to 18565738 1200 + pseudogene phosphoglycerate kinase 1, pseudogene 3
Gm30723 3 18609475 to 18617380 7905 - lncRNA gene predicted gene, 30723
Gm37317 3 18609808 to 18610831 1023 - pseudogene predicted gene, 37317
Gm30789 3 18619549 to 18643095 23546 - lncRNA gene predicted gene, 30789
Gm42944 3 18622162 to 18626141 3979 + unclassified gene predicted gene 42944
Tssr28499 3 18695666 to 18695674 8 + TSS region transcription start site region 28499
Gm30341 3 18753077 to 18753365 288 + pseudogene predicted gene, 30341
Tssr32685 3 19043570 to 19043584 14 - TSS region transcription start site region 32685
Armc1 3 19132144 to 19163090 30946 - protein coding gene armadillo repeat containing 1
Tssr32686 3 19140489 to 19140510 21 - TSS region transcription start site region 32686
Gm37979 3 19143188 to 19143899 711 - unclassified gene predicted gene, 37979
Cpgi13000 3 19162411 to 19163398 987 CpG island CpG island 13000
Tssr32687 3 19163011 to 19163085 74 - TSS region transcription start site region 32687
Tssr28500 3 19187302 to 19187316 14 + TSS region transcription start site region 28500
Tssr28501 3 19187321 to 19187351 30 + TSS region transcription start site region 28501
Mtfr1 3 19187327 to 19220817 33490 + protein coding gene mitochondrial fission regulator 1
Tssr28502 3 19187359 to 19187362 3 + TSS region transcription start site region 28502
Tssr28503 3 19187366 to 19187373 7 + TSS region transcription start site region 28503
Cpgi13001 3 19187755 to 19188692 937 CpG island CpG island 13001
Tssr28504 3 19188085 to 19188098 13 + TSS region transcription start site region 28504
Tssr28505 3 19188099 to 19188108 9 + TSS region transcription start site region 28505
Tssr28506 3 19188112 to 19188122 10 + TSS region transcription start site region 28506
Tssr28507 3 19188214 to 19188225 11 + TSS region transcription start site region 28507
Tssr28508 3 19188226 to 19188273 47 + TSS region transcription start site region 28508
Tssr28509 3 19188288 to 19188293 5 + TSS region transcription start site region 28509
Tssr837 3 19217651 to 19217653 2 + TSS region transcription start site region 837
Pde7a 3 19223108 to 19311322 88214 - protein coding gene phosphodiesterase 7A