Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:17699473-22982177

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332 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr32670 3 17714648 to 17714652 4 - TSS region transcription start site region 32670
Tssr32671 3 17761249 to 17761267 18 - TSS region transcription start site region 32671
Tssr32672 3 17785305 to 17785316 11 - TSS region transcription start site region 32672
Tssr32673 3 17785526 to 17785557 31 - TSS region transcription start site region 32673
Tssr32674 3 17785568 to 17785584 16 - TSS region transcription start site region 32674
Tssr32675 3 17785607 to 17785616 9 - TSS region transcription start site region 32675
Cpgi12994 3 17786028 to 17787131 1103 CpG island CpG island 12994
Tssr32676 3 17786307 to 17786318 11 - TSS region transcription start site region 32676
Tssr32677 3 17786834 to 17786845 11 - TSS region transcription start site region 32677
Tssr32678 3 17789607 to 17789651 44 - TSS region transcription start site region 32678
Tssr28480 3 17789727 to 17789763 36 + TSS region transcription start site region 28480
Tssr28481 3 17789892 to 17789955 63 + TSS region transcription start site region 28481
Mir124-2hg 3 17789921 to 17800071 10150 + lincRNA gene Mir124-2 host gene (non-protein coding)
Tssr28482 3 17789956 to 17789972 16 + TSS region transcription start site region 28482
Tssr28483 3 17790051 to 17790068 17 + TSS region transcription start site region 28483
Tssr28484 3 17790120 to 17790134 14 + TSS region transcription start site region 28484
Cpgi12995 3 17790414 to 17790681 267 CpG island CpG island 12995
Cpgi12996 3 17793837 to 17795018 1181 CpG island CpG island 12996
Tssr28485 3 17793908 to 17793926 18 + TSS region transcription start site region 28485
Tssr28486 3 17793989 to 17793992 3 + TSS region transcription start site region 28486
Tssr28487 3 17794015 to 17794042 27 + TSS region transcription start site region 28487
Tssr28488 3 17794296 to 17794339 43 + TSS region transcription start site region 28488
Mir124a-2 3 17795662 to 17795770 108 + miRNA gene microRNA 124a-2
Tssr28489 3 17795743 to 17795746 3 + TSS region transcription start site region 28489
Gm23441 3 17803621 to 17803747 126 - snRNA gene predicted gene, 23441
Gm42187 3 17818728 to 17853402 34674 + lncRNA gene predicted gene, 42187
4833408G04Rik 3 17829275 to 17831395 2120 unclassified gene RIKEN cDNA 4833408G04 gene
Gm19175 3 17923708 to 17924623 915 + pseudogene predicted gene, 19175
Tssr28490 3 17948436 to 17948450 14 + TSS region transcription start site region 28490
Cypt12 3 17948444 to 17948952 508 + protein coding gene cysteine-rich perinuclear theca 12
Tssr835 3 17948459 to 17948468 9 + TSS region transcription start site region 835
Tssr28491 3 18008741 to 18008748 7 + TSS region transcription start site region 28491
Gm5844 3 18008806 to 18010996 2190 + pseudogene predicted gene 5844
Cpgi12997 3 18052626 to 18052803 177 CpG island CpG island 12997
Tssr28492 3 18054150 to 18054162 12 + TSS region transcription start site region 28492
Tssr28493 3 18054233 to 18054249 16 + TSS region transcription start site region 28493
Tssr28494 3 18054258 to 18054267 9 + TSS region transcription start site region 28494
Bhlhe22 3 18054325 to 18057514 3189 + protein coding gene basic helix-loop-helix family, member e22
Tssr28495 3 18054392 to 18054407 15 + TSS region transcription start site region 28495
Cpgi12998 3 18054418 to 18056039 1621 CpG island CpG island 12998
Tssr28496 3 18054496 to 18054515 19 + TSS region transcription start site region 28496
Gm23726 3 18069326 to 18069392 66 + miRNA gene predicted gene, 23726
Cyp7b1 3 18071950 to 18243338 171388 - protein coding gene cytochrome P450, family 7, subfamily b, polypeptide 1
Tssr32679 3 18097024 to 18097026 2 - TSS region transcription start site region 32679
Tssr32680 3 18125716 to 18125720 4 - TSS region transcription start site region 32680
Tssr28497 3 18176340 to 18176341 1 + TSS region transcription start site region 28497
Gm23686 3 18177462 to 18177625 163 - snRNA gene predicted gene, 23686
Tssr32681 3 18177630 to 18177636 6 - TSS region transcription start site region 32681
Tssr32682 3 18228615 to 18228624 9 - TSS region transcription start site region 32682
Cpgi12999 3 18242848 to 18243572 724 CpG island CpG island 12999
Tssr836 3 18243214 to 18243252 38 - TSS region transcription start site region 836
Tssr32683 3 18243267 to 18243276 9 - TSS region transcription start site region 32683
Tssr32684 3 18243289 to 18243349 60 - TSS region transcription start site region 32684
Gm43834 3 18299310 to 18304139 4829 + unclassified gene predicted gene 43834
Gm30667 3 18371749 to 18461341 89592 - lincRNA gene predicted gene, 30667
4930433B08Rik 3 18468287 to 18480477 12190 - lincRNA gene RIKEN cDNA 4930433B08 gene
Tssr28498 3 18533512 to 18533515 3 + TSS region transcription start site region 28498
Gm6369 3 18533875 to 18534286 411 + pseudogene predicted gene 6369
Pgk1-ps3 3 18564538 to 18565738 1200 + pseudogene phosphoglycerate kinase 1, pseudogene 3
Gm30723 3 18609475 to 18617380 7905 - lncRNA gene predicted gene, 30723
Gm37317 3 18609808 to 18610831 1023 - pseudogene predicted gene, 37317
Gm30789 3 18619549 to 18643095 23546 - lncRNA gene predicted gene, 30789
Gm42944 3 18622162 to 18626141 3979 + unclassified gene predicted gene 42944
Tssr28499 3 18695666 to 18695674 8 + TSS region transcription start site region 28499
Gm30341 3 18753077 to 18753365 288 + pseudogene predicted gene, 30341
Tssr32685 3 19043570 to 19043584 14 - TSS region transcription start site region 32685
Armc1 3 19132144 to 19163090 30946 - protein coding gene armadillo repeat containing 1
Tssr32686 3 19140489 to 19140510 21 - TSS region transcription start site region 32686
Gm37979 3 19143188 to 19143899 711 - unclassified gene predicted gene, 37979
Cpgi13000 3 19162411 to 19163398 987 CpG island CpG island 13000
Tssr32687 3 19163011 to 19163085 74 - TSS region transcription start site region 32687
Tssr28500 3 19187302 to 19187316 14 + TSS region transcription start site region 28500
Tssr28501 3 19187321 to 19187351 30 + TSS region transcription start site region 28501
Mtfr1 3 19187327 to 19220817 33490 + protein coding gene mitochondrial fission regulator 1
Tssr28502 3 19187359 to 19187362 3 + TSS region transcription start site region 28502
Tssr28503 3 19187366 to 19187373 7 + TSS region transcription start site region 28503
Cpgi13001 3 19187755 to 19188692 937 CpG island CpG island 13001
Tssr28504 3 19188085 to 19188098 13 + TSS region transcription start site region 28504
Tssr28505 3 19188099 to 19188108 9 + TSS region transcription start site region 28505
Tssr28506 3 19188112 to 19188122 10 + TSS region transcription start site region 28506
Tssr28507 3 19188214 to 19188225 11 + TSS region transcription start site region 28507
Tssr28508 3 19188226 to 19188273 47 + TSS region transcription start site region 28508
Tssr28509 3 19188288 to 19188293 5 + TSS region transcription start site region 28509
Tssr837 3 19217651 to 19217653 2 + TSS region transcription start site region 837
Pde7a 3 19223108 to 19311322 88214 - protein coding gene phosphodiesterase 7A
Gm16093 3 19227780 to 19240987 13207 + antisense lncRNA gene predicted gene 16093
Tssr32688 3 19238480 to 19238485 5 - TSS region transcription start site region 32688
Tssr32689 3 19238877 to 19238898 21 - TSS region transcription start site region 32689
Tssr32690 3 19264927 to 19264939 12 - TSS region transcription start site region 32690
Tssr32691 3 19264959 to 19264974 15 - TSS region transcription start site region 32691
Tssr32692 3 19264997 to 19265005 8 - TSS region transcription start site region 32692
Tssr32693 3 19265007 to 19265023 16 - TSS region transcription start site region 32693
Tssr32694 3 19265096 to 19265109 13 - TSS region transcription start site region 32694
Tssr32695 3 19290036 to 19290041 5 - TSS region transcription start site region 32695
Cpgi13002 3 19310444 to 19311988 1544 CpG island CpG island 13002
Tssr28510 3 19310692 to 19310705 13 + TSS region transcription start site region 28510
Tssr28511 3 19310848 to 19310859 11 + TSS region transcription start site region 28511
Tssr32696 3 19311243 to 19311263 20 - TSS region transcription start site region 32696
Tssr32697 3 19311269 to 19311314 45 - TSS region transcription start site region 32697
Tssr32698 3 19311333 to 19311344 11 - TSS region transcription start site region 32698
Tssr32699 3 19311349 to 19311378 29 - TSS region transcription start site region 32699
Tssr32700 3 19311389 to 19311403 14 - TSS region transcription start site region 32700
Tssr28512 3 19311440 to 19311473 33 + TSS region transcription start site region 28512
Tssr28513 3 19311481 to 19311495 14 + TSS region transcription start site region 28513
3110037C07Rik 3 19311659 to 19313734 2075 unclassified gene RIKEN cDNA 3110037C07 gene
Tssr32701 3 19312192 to 19312213 21 - TSS region transcription start site region 32701
Gm22282 3 19330773 to 19331084 311 + unclassified non-coding RNA gene predicted gene, 22282
D3Mit328 3 19368403 to 19368527 124 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 328
Gm42188 3 19374179 to 19387634 13455 + lncRNA gene predicted gene, 42188
Tssr28514 3 19508589 to 19508600 11 + TSS region transcription start site region 28514
Dnajc5b 3 19508595 to 19610862 102267 + protein coding gene DnaJ heat shock protein family (Hsp40) member C5 beta
Tssr28515 3 19508606 to 19508641 35 + TSS region transcription start site region 28515
Tssr28516 3 19508646 to 19508657 11 + TSS region transcription start site region 28516
Tssr28517 3 19560250 to 19560260 10 + TSS region transcription start site region 28517
Gm23330 3 19560253 to 19560416 163 + snRNA gene predicted gene, 23330
Tssr838 3 19561779 to 19561784 5 + TSS region transcription start site region 838
Gm6141 3 19584791 to 19585538 747 + pseudogene predicted pseudogene 6141
1700064H15Rik 3 19623566 to 19629477 5911 - protein coding gene RIKEN cDNA 1700064H15 gene
Cpgi13003 3 19627914 to 19629077 1163 CpG island CpG island 13003
n-TRacg3 3 19627959 to 19628031 72 - tRNA gene nuclear encoded tRNA arginine 3 (anticodon ACG)
n-TYgta1 3 19628355 to 19628447 92 + tRNA gene nuclear encoded tRNA tyrosine 1 (anticodon GTA)
Tssr32702 3 19628669 to 19628685 16 - TSS region transcription start site region 32702
n-TYgta2 3 19628782 to 19628870 88 + tRNA gene nuclear encoded tRNA tyrosine 2 (anticodon GTA)
n-TAagc14 3 19628995 to 19629067 72 + tRNA gene nuclear encoded tRNA alanine 14 (anticodon AGC)
Cpgi13004 3 19629850 to 19630071 221 CpG island CpG island 13004
Tssr32703 3 19644359 to 19644364 5 - TSS region transcription start site region 32703
Tssr28518 3 19644452 to 19644466 14 + TSS region transcription start site region 28518
Tssr28519 3 19644467 to 19644474 7 + TSS region transcription start site region 28519
Trim55 3 19644474 to 19692421 47947 + protein coding gene tripartite motif-containing 55
Tssr28520 3 19644517 to 19644529 12 + TSS region transcription start site region 28520
Tssr28521 3 19644568 to 19644573 5 + TSS region transcription start site region 28521
Tssr28522 3 19644576 to 19644589 13 + TSS region transcription start site region 28522
Tssr28523 3 19679033 to 19679042 9 + TSS region transcription start site region 28523
D3Mit91 3 19681159 to 19681307 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 91
BC002189 3 19685971 to 19686568 597 + sense intronic lncRNA gene cDNA sequence BC002189
Tssr28524 3 19687080 to 19687083 3 + TSS region transcription start site region 28524
Tssr28525 3 19689811 to 19689823 12 + TSS region transcription start site region 28525
Tssr28526 3 19690017 to 19690020 3 + TSS region transcription start site region 28526
Tssr28527 3 19691932 to 19691944 12 + TSS region transcription start site region 28527
Tssr28528 3 19692015 to 19692026 11 + TSS region transcription start site region 28528
Tssr28529 3 19692494 to 19692520 26 + TSS region transcription start site region 28529
Crh 3 19693401 to 19695396 1995 - protein coding gene corticotropin releasing hormone
Cpgi13005 3 19693973 to 19695160 1187 CpG island CpG island 13005
Gm42189 3 19694486 to 19707354 12868 + lncRNA gene predicted gene, 42189
Tssr32704 3 19695325 to 19695336 11 - TSS region transcription start site region 32704
Tssr28530 3 19707417 to 19707418 1 + TSS region transcription start site region 28530
Gm18864 3 19708270 to 19709320 1050 - pseudogene predicted gene, 18864
Gm7442 3 19768873 to 19769255 382 + pseudogene predicted gene 7442
D3Mit165 3 19786873 to 19787067 194 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 165
D3Mit236 3 19786880 to 19787091 211 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 236
Gm2148 3 19880872 to 19881746 874 - pseudogene predicted gene 2148
Cpgi13006 3 19894558 to 19895632 1074 CpG island CpG island 13006
Tssr28531 3 19894855 to 19894894 39 + TSS region transcription start site region 28531
4632415L05Rik 3 19894886 to 19898984 4098 + lincRNA gene RIKEN cDNA 4632415L05 gene
Tssr28532 3 19894903 to 19894914 11 + TSS region transcription start site region 28532
Tssr28533 3 19895096 to 19895124 28 + TSS region transcription start site region 28533
Gm37523 3 19913796 to 19914355 559 + pseudogene predicted gene, 37523
Gm17771 3 19934294 to 19935380 1086 + pseudogene predicted gene, 17771
Gm42190 3 19945154 to 19953954 8800 - lncRNA gene predicted gene, 42190
Tssr28534 3 19956925 to 19956930 5 + TSS region transcription start site region 28534
Tssr28535 3 19956986 to 19956993 7 + TSS region transcription start site region 28535
Tssr28536 3 19957037 to 19957073 36 + TSS region transcription start site region 28536
Cp 3 19957054 to 20009145 52091 + protein coding gene ceruloplasmin
Tssr28537 3 19957088 to 19957114 26 + TSS region transcription start site region 28537
Tssr28538 3 19957119 to 19957131 12 + TSS region transcription start site region 28538
Tssr28539 3 19957170 to 19957179 9 + TSS region transcription start site region 28539
Tssr28540 3 19957215 to 19957224 9 + TSS region transcription start site region 28540
Tssr28541 3 19957240 to 19957263 23 + TSS region transcription start site region 28541
Tssr28542 3 19957341 to 19957356 15 + TSS region transcription start site region 28542
Tssr28543 3 19966345 to 19966356 11 + TSS region transcription start site region 28543
Tssr28544 3 19966363 to 19966383 20 + TSS region transcription start site region 28544
Tssr28545 3 19970915 to 19970924 9 + TSS region transcription start site region 28545
Tssr28546 3 19971012 to 19971029 17 + TSS region transcription start site region 28546
Tssr28547 3 19972625 to 19972636 11 + TSS region transcription start site region 28547
Tssr28548 3 19974966 to 19974979 13 + TSS region transcription start site region 28548
Tssr28549 3 19980589 to 19980598 9 + TSS region transcription start site region 28549
Tssr839 3 19985611 to 19985623 12 + TSS region transcription start site region 839
Tssr28550 3 19985632 to 19985643 11 + TSS region transcription start site region 28550
Tssr28551 3 19989055 to 19989069 14 + TSS region transcription start site region 28551
Tssr28552 3 19989134 to 19989149 15 + TSS region transcription start site region 28552
Tssr28553 3 19989151 to 19989164 13 + TSS region transcription start site region 28553
Tssr28554 3 19989176 to 19989191 15 + TSS region transcription start site region 28554
Tssr28555 3 19992623 to 19992639 16 + TSS region transcription start site region 28555
Tssr28556 3 19992775 to 19992793 18 + TSS region transcription start site region 28556
Tssr840 3 19992796 to 19992817 21 + TSS region transcription start site region 840
Hps3 3 19995945 to 20035315 39370 - protein coding gene HPS3, biogenesis of lysosomal organelles complex 2 subunit 1
Cpgi13007 3 20034835 to 20035529 694 CpG island CpG island 13007
Tssr32705 3 20035269 to 20035283 14 - TSS region transcription start site region 32705
Tssr32706 3 20035285 to 20035325 40 - TSS region transcription start site region 32706
D830024F11Rik 3 20056574 to 20058155 1581 unclassified gene RIKEN cDNA D830024F11 gene
Cpgi13008 3 20057507 to 20058182 675 CpG island CpG island 13008
Tssr28557 3 20057802 to 20057857 55 + TSS region transcription start site region 28557
Hltf 3 20057811 to 20118490 60679 + protein coding gene helicase-like transcription factor
Tssr28558 3 20057878 to 20057885 7 + TSS region transcription start site region 28558
Tssr28559 3 20058336 to 20058352 16 + TSS region transcription start site region 28559
Tssr28560 3 20062647 to 20062659 12 + TSS region transcription start site region 28560
Tssr28561 3 20105030 to 20105042 12 + TSS region transcription start site region 28561
Gyg 3 20122084 to 20155266 33182 - protein coding gene glycogenin
Tssr32707 3 20122473 to 20122478 5 - TSS region transcription start site region 32707
Tssr32708 3 20132513 to 20132516 3 - TSS region transcription start site region 32708