Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:16446986-17837145

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52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr834 3 16597879 to 16597880 1 + TSS region transcription start site region 834
Tssr28479 3 16792797 to 16792800 3 + TSS region transcription start site region 28479
Gm30223 3 16817078 to 16847955 30877 + lncRNA gene predicted gene, 30223
Gm26485 3 16823249 to 16823312 63 - snRNA gene predicted gene, 26485
Gm42184 3 16862931 to 16902974 40043 + lncRNA gene predicted gene, 42184
Gm42185 3 17002671 to 17069484 66813 - lncRNA gene predicted gene, 42185
D3Mit353 3 17068890 to 17068983 93 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 353
Gm42186 3 17117133 to 17139762 22629 - lncRNA gene predicted gene, 42186
D3Mit324 3 17141986 to 17142145 159 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 324
Gm5283 3 17230642 to 17230975 333 - pseudogene predicted gene 5283
Gm24963 3 17251301 to 17251444 143 - snoRNA gene predicted gene, 24963
Gm6350 3 17269456 to 17270794 1338 + pseudogene predicted gene 6350
Gm18937 3 17283151 to 17284141 990 + pseudogene predicted gene, 18937
Tssr32664 3 17326363 to 17326378 15 - TSS region transcription start site region 32664
Tssr32665 3 17326562 to 17326568 6 - TSS region transcription start site region 32665
Tssr32666 3 17327906 to 17327926 20 - TSS region transcription start site region 32666
Gm30340 3 17328694 to 17334425 5731 - lincRNA gene predicted gene, 30340
Gm19694 3 17395879 to 17396383 504 + pseudogene predicted gene, 19694
Tssr32667 3 17403172 to 17403175 3 - TSS region transcription start site region 32667
D3Mit131 3 17562555 to 17562751 196 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 131
D3Mit62 3 17567423 to 17567548 125 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 62
Gm38154 3 17670688 to 17671027 339 + pseudogene predicted gene, 38154
Tssr32668 3 17691936 to 17691940 4 - TSS region transcription start site region 32668
Tssr32669 3 17694612 to 17694614 2 - TSS region transcription start site region 32669
Tssr32670 3 17714648 to 17714652 4 - TSS region transcription start site region 32670
Tssr32671 3 17761249 to 17761267 18 - TSS region transcription start site region 32671
Tssr32672 3 17785305 to 17785316 11 - TSS region transcription start site region 32672
Tssr32673 3 17785526 to 17785557 31 - TSS region transcription start site region 32673
Tssr32674 3 17785568 to 17785584 16 - TSS region transcription start site region 32674
Tssr32675 3 17785607 to 17785616 9 - TSS region transcription start site region 32675
Cpgi12994 3 17786028 to 17787131 1103 CpG island CpG island 12994
Tssr32676 3 17786307 to 17786318 11 - TSS region transcription start site region 32676
Tssr32677 3 17786834 to 17786845 11 - TSS region transcription start site region 32677
Tssr32678 3 17789607 to 17789651 44 - TSS region transcription start site region 32678
Tssr28480 3 17789727 to 17789763 36 + TSS region transcription start site region 28480
Tssr28481 3 17789892 to 17789955 63 + TSS region transcription start site region 28481
Mir124-2hg 3 17789921 to 17800071 10150 + lincRNA gene Mir124-2 host gene (non-protein coding)
Tssr28482 3 17789956 to 17789972 16 + TSS region transcription start site region 28482
Tssr28483 3 17790051 to 17790068 17 + TSS region transcription start site region 28483
Tssr28484 3 17790120 to 17790134 14 + TSS region transcription start site region 28484
Cpgi12995 3 17790414 to 17790681 267 CpG island CpG island 12995
Cpgi12996 3 17793837 to 17795018 1181 CpG island CpG island 12996
Tssr28485 3 17793908 to 17793926 18 + TSS region transcription start site region 28485
Tssr28486 3 17793989 to 17793992 3 + TSS region transcription start site region 28486
Tssr28487 3 17794015 to 17794042 27 + TSS region transcription start site region 28487
Tssr28488 3 17794296 to 17794339 43 + TSS region transcription start site region 28488
Mir124a-2 3 17795662 to 17795770 108 + miRNA gene microRNA 124a-2
Tssr28489 3 17795743 to 17795746 3 + TSS region transcription start site region 28489
Gm23441 3 17803621 to 17803747 126 - snRNA gene predicted gene, 23441
Gm42187 3 17818728 to 17853402 34674 + lncRNA gene predicted gene, 42187
4833408G04Rik 3 17829275 to 17831395 2120 unclassified gene RIKEN cDNA 4833408G04 gene
Tcq12 3 130370000 to 16450000 -113920000 QTL total cholesterol QTL 12