Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:16200743-19390746

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137 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ythdf3 3 16183212 to 16217037 33825 + protein coding gene YTH N6-methyladenosine RNA binding protein 3
Tssr28478 3 16214691 to 16214705 14 + TSS region transcription start site region 28478
Tssr32663 3 16257253 to 16257254 1 - TSS region transcription start site region 32663
Tssr834 3 16597879 to 16597880 1 + TSS region transcription start site region 834
Tssr28479 3 16792797 to 16792800 3 + TSS region transcription start site region 28479
Gm30223 3 16817078 to 16847955 30877 + lncRNA gene predicted gene, 30223
Gm26485 3 16823249 to 16823312 63 - snRNA gene predicted gene, 26485
Gm42184 3 16862931 to 16902974 40043 + lncRNA gene predicted gene, 42184
Gm42185 3 17002671 to 17069484 66813 - lncRNA gene predicted gene, 42185
D3Mit353 3 17068890 to 17068983 93 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 353
Gm42186 3 17117133 to 17139762 22629 - lncRNA gene predicted gene, 42186
D3Mit324 3 17141986 to 17142145 159 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 324
Gm5283 3 17230642 to 17230975 333 - pseudogene predicted gene 5283
Gm24963 3 17251301 to 17251444 143 - snoRNA gene predicted gene, 24963
Gm6350 3 17269456 to 17270794 1338 + pseudogene predicted gene 6350
Gm18937 3 17283151 to 17284141 990 + pseudogene predicted gene, 18937
Tssr32664 3 17326363 to 17326378 15 - TSS region transcription start site region 32664
Tssr32665 3 17326562 to 17326568 6 - TSS region transcription start site region 32665
Tssr32666 3 17327906 to 17327926 20 - TSS region transcription start site region 32666
Gm30340 3 17328694 to 17334425 5731 - lincRNA gene predicted gene, 30340
Gm19694 3 17395879 to 17396383 504 + pseudogene predicted gene, 19694
Tssr32667 3 17403172 to 17403175 3 - TSS region transcription start site region 32667
D3Mit131 3 17562555 to 17562751 196 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 131
D3Mit62 3 17567423 to 17567548 125 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 62
Gm38154 3 17670688 to 17671027 339 + pseudogene predicted gene, 38154
Tssr32668 3 17691936 to 17691940 4 - TSS region transcription start site region 32668
Tssr32669 3 17694612 to 17694614 2 - TSS region transcription start site region 32669
Tssr32670 3 17714648 to 17714652 4 - TSS region transcription start site region 32670
Tssr32671 3 17761249 to 17761267 18 - TSS region transcription start site region 32671
Tssr32672 3 17785305 to 17785316 11 - TSS region transcription start site region 32672
Tssr32673 3 17785526 to 17785557 31 - TSS region transcription start site region 32673
Tssr32674 3 17785568 to 17785584 16 - TSS region transcription start site region 32674
Tssr32675 3 17785607 to 17785616 9 - TSS region transcription start site region 32675
Cpgi12994 3 17786028 to 17787131 1103 CpG island CpG island 12994
Tssr32676 3 17786307 to 17786318 11 - TSS region transcription start site region 32676
Tssr32677 3 17786834 to 17786845 11 - TSS region transcription start site region 32677
Tssr32678 3 17789607 to 17789651 44 - TSS region transcription start site region 32678
Tssr28480 3 17789727 to 17789763 36 + TSS region transcription start site region 28480
Tssr28481 3 17789892 to 17789955 63 + TSS region transcription start site region 28481
Mir124-2hg 3 17789921 to 17800071 10150 + lincRNA gene Mir124-2 host gene (non-protein coding)
Tssr28482 3 17789956 to 17789972 16 + TSS region transcription start site region 28482
Tssr28483 3 17790051 to 17790068 17 + TSS region transcription start site region 28483
Tssr28484 3 17790120 to 17790134 14 + TSS region transcription start site region 28484
Cpgi12995 3 17790414 to 17790681 267 CpG island CpG island 12995
Cpgi12996 3 17793837 to 17795018 1181 CpG island CpG island 12996
Tssr28485 3 17793908 to 17793926 18 + TSS region transcription start site region 28485
Tssr28486 3 17793989 to 17793992 3 + TSS region transcription start site region 28486
Tssr28487 3 17794015 to 17794042 27 + TSS region transcription start site region 28487
Tssr28488 3 17794296 to 17794339 43 + TSS region transcription start site region 28488
Mir124a-2 3 17795662 to 17795770 108 + miRNA gene microRNA 124a-2
Tssr28489 3 17795743 to 17795746 3 + TSS region transcription start site region 28489
Gm23441 3 17803621 to 17803747 126 - snRNA gene predicted gene, 23441
Gm42187 3 17818728 to 17853402 34674 + lncRNA gene predicted gene, 42187
4833408G04Rik 3 17829275 to 17831395 2120 unclassified gene RIKEN cDNA 4833408G04 gene
Gm19175 3 17923708 to 17924623 915 + pseudogene predicted gene, 19175
Tssr28490 3 17948436 to 17948450 14 + TSS region transcription start site region 28490
Cypt12 3 17948444 to 17948952 508 + protein coding gene cysteine-rich perinuclear theca 12
Tssr835 3 17948459 to 17948468 9 + TSS region transcription start site region 835
Tssr28491 3 18008741 to 18008748 7 + TSS region transcription start site region 28491
Gm5844 3 18008806 to 18010996 2190 + pseudogene predicted gene 5844
Cpgi12997 3 18052626 to 18052803 177 CpG island CpG island 12997
Tssr28492 3 18054150 to 18054162 12 + TSS region transcription start site region 28492
Tssr28493 3 18054233 to 18054249 16 + TSS region transcription start site region 28493
Tssr28494 3 18054258 to 18054267 9 + TSS region transcription start site region 28494
Bhlhe22 3 18054325 to 18057514 3189 + protein coding gene basic helix-loop-helix family, member e22
Tssr28495 3 18054392 to 18054407 15 + TSS region transcription start site region 28495
Cpgi12998 3 18054418 to 18056039 1621 CpG island CpG island 12998
Tssr28496 3 18054496 to 18054515 19 + TSS region transcription start site region 28496
Gm23726 3 18069326 to 18069392 66 + miRNA gene predicted gene, 23726
Cyp7b1 3 18071950 to 18243338 171388 - protein coding gene cytochrome P450, family 7, subfamily b, polypeptide 1
Tssr32679 3 18097024 to 18097026 2 - TSS region transcription start site region 32679
Tssr32680 3 18125716 to 18125720 4 - TSS region transcription start site region 32680
Tssr28497 3 18176340 to 18176341 1 + TSS region transcription start site region 28497
Gm23686 3 18177462 to 18177625 163 - snRNA gene predicted gene, 23686
Tssr32681 3 18177630 to 18177636 6 - TSS region transcription start site region 32681
Tssr32682 3 18228615 to 18228624 9 - TSS region transcription start site region 32682
Cpgi12999 3 18242848 to 18243572 724 CpG island CpG island 12999
Tssr836 3 18243214 to 18243252 38 - TSS region transcription start site region 836
Tssr32683 3 18243267 to 18243276 9 - TSS region transcription start site region 32683
Tssr32684 3 18243289 to 18243349 60 - TSS region transcription start site region 32684
Gm43834 3 18299310 to 18304139 4829 + unclassified gene predicted gene 43834
Gm30667 3 18371749 to 18461341 89592 - lincRNA gene predicted gene, 30667
4930433B08Rik 3 18468287 to 18480477 12190 - lincRNA gene RIKEN cDNA 4930433B08 gene
Tssr28498 3 18533512 to 18533515 3 + TSS region transcription start site region 28498
Gm6369 3 18533875 to 18534286 411 + pseudogene predicted gene 6369
Pgk1-ps3 3 18564538 to 18565738 1200 + pseudogene phosphoglycerate kinase 1, pseudogene 3
Gm30723 3 18609475 to 18617380 7905 - lncRNA gene predicted gene, 30723
Gm37317 3 18609808 to 18610831 1023 - pseudogene predicted gene, 37317
Gm30789 3 18619549 to 18643095 23546 - lncRNA gene predicted gene, 30789
Gm42944 3 18622162 to 18626141 3979 + unclassified gene predicted gene 42944
Tssr28499 3 18695666 to 18695674 8 + TSS region transcription start site region 28499
Gm30341 3 18753077 to 18753365 288 + pseudogene predicted gene, 30341
Tssr32685 3 19043570 to 19043584 14 - TSS region transcription start site region 32685
Armc1 3 19132144 to 19163090 30946 - protein coding gene armadillo repeat containing 1
Tssr32686 3 19140489 to 19140510 21 - TSS region transcription start site region 32686
Gm37979 3 19143188 to 19143899 711 - unclassified gene predicted gene, 37979
Cpgi13000 3 19162411 to 19163398 987 CpG island CpG island 13000
Tssr32687 3 19163011 to 19163085 74 - TSS region transcription start site region 32687
Tssr28500 3 19187302 to 19187316 14 + TSS region transcription start site region 28500
Tssr28501 3 19187321 to 19187351 30 + TSS region transcription start site region 28501
Mtfr1 3 19187327 to 19220817 33490 + protein coding gene mitochondrial fission regulator 1
Tssr28502 3 19187359 to 19187362 3 + TSS region transcription start site region 28502
Tssr28503 3 19187366 to 19187373 7 + TSS region transcription start site region 28503
Cpgi13001 3 19187755 to 19188692 937 CpG island CpG island 13001
Tssr28504 3 19188085 to 19188098 13 + TSS region transcription start site region 28504
Tssr28505 3 19188099 to 19188108 9 + TSS region transcription start site region 28505
Tssr28506 3 19188112 to 19188122 10 + TSS region transcription start site region 28506
Tssr28507 3 19188214 to 19188225 11 + TSS region transcription start site region 28507
Tssr28508 3 19188226 to 19188273 47 + TSS region transcription start site region 28508
Tssr28509 3 19188288 to 19188293 5 + TSS region transcription start site region 28509
Tssr837 3 19217651 to 19217653 2 + TSS region transcription start site region 837
Pde7a 3 19223108 to 19311322 88214 - protein coding gene phosphodiesterase 7A
Gm16093 3 19227780 to 19240987 13207 + antisense lncRNA gene predicted gene 16093
Tssr32688 3 19238480 to 19238485 5 - TSS region transcription start site region 32688
Tssr32689 3 19238877 to 19238898 21 - TSS region transcription start site region 32689
Tssr32690 3 19264927 to 19264939 12 - TSS region transcription start site region 32690
Tssr32691 3 19264959 to 19264974 15 - TSS region transcription start site region 32691
Tssr32692 3 19264997 to 19265005 8 - TSS region transcription start site region 32692
Tssr32693 3 19265007 to 19265023 16 - TSS region transcription start site region 32693
Tssr32694 3 19265096 to 19265109 13 - TSS region transcription start site region 32694
Tssr32695 3 19290036 to 19290041 5 - TSS region transcription start site region 32695
Cpgi13002 3 19310444 to 19311988 1544 CpG island CpG island 13002
Tssr28510 3 19310692 to 19310705 13 + TSS region transcription start site region 28510
Tssr28511 3 19310848 to 19310859 11 + TSS region transcription start site region 28511
Tssr32696 3 19311243 to 19311263 20 - TSS region transcription start site region 32696
Tssr32697 3 19311269 to 19311314 45 - TSS region transcription start site region 32697
Tssr32698 3 19311333 to 19311344 11 - TSS region transcription start site region 32698
Tssr32699 3 19311349 to 19311378 29 - TSS region transcription start site region 32699
Tssr32700 3 19311389 to 19311403 14 - TSS region transcription start site region 32700
Tssr28512 3 19311440 to 19311473 33 + TSS region transcription start site region 28512
Tssr28513 3 19311481 to 19311495 14 + TSS region transcription start site region 28513
3110037C07Rik 3 19311659 to 19313734 2075 unclassified gene RIKEN cDNA 3110037C07 gene
Tssr32701 3 19312192 to 19312213 21 - TSS region transcription start site region 32701
Gm22282 3 19330773 to 19331084 311 + unclassified non-coding RNA gene predicted gene, 22282
D3Mit328 3 19368403 to 19368527 124 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 328
Gm42188 3 19374179 to 19387634 13455 + lncRNA gene predicted gene, 42188
Tcq12 3 130370000 to 16450000 -113920000 QTL total cholesterol QTL 12