Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:156896816-158314758

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Negr1 3 156561794 to 157316445 754651 + protein coding gene neuronal growth regulator 1
Gm15577 3 156903863 to 156920780 16917 - antisense lncRNA gene predicted gene 15577
Tssr36288 3 156920751 to 156920785 34 - TSS region transcription start site region 36288
Gm43527 3 157000417 to 157003594 3177 + unclassified gene predicted gene 43527
Gm43526 3 157071744 to 157073308 1564 + unclassified gene predicted gene 43526
Eih5 3 157139788 to 85418436 -71721352 QTL ethanol induced hypothermia 5
4930566N20Rik 3 157207662 to 157208860 1198 - unclassified gene RIKEN cDNA 4930566N20 gene
Gm24373 3 157210929 to 157211060 131 + snoRNA gene predicted gene, 24373
Gm23725 3 157237225 to 157237331 106 - snRNA gene predicted gene, 23725
Gm22458 3 157365998 to 157366104 106 + snRNA gene predicted gene, 22458
Gm23379 3 157398262 to 157398368 106 - snRNA gene predicted gene, 23379
Gm5983 3 157410017 to 157410786 769 + pseudogene predicted gene 5983
4930592C13Rik 3 157527515 to 157534090 6575 - antisense lncRNA gene RIKEN cDNA 4930592C13 gene
Cpgi13975 3 157533910 to 157535079 1169 CpG island CpG island 13975
Tssr36289 3 157534062 to 157534075 13 - TSS region transcription start site region 36289
Tssr36290 3 157534077 to 157534094 17 - TSS region transcription start site region 36290
Tssr32489 3 157534103 to 157534160 57 + TSS region transcription start site region 32489
Zranb2 3 157534151 to 157548341 14190 + protein coding gene zinc finger, RAN-binding domain containing 2
Tssr32490 3 157534351 to 157534411 60 + TSS region transcription start site region 32490
Tssr32491 3 157536546 to 157536557 11 + TSS region transcription start site region 32491
Mir186 3 157544279 to 157544349 70 + miRNA gene microRNA 186
Tssr32492 3 157548818 to 157548821 3 + TSS region transcription start site region 32492
Cpgi13976 3 157566625 to 157568179 1554 CpG island CpG island 13976
Ptger3 3 157566816 to 157644758 77942 + protein coding gene prostaglandin E receptor 3 (subtype EP3)
Tssr32493 3 157566854 to 157566863 9 + TSS region transcription start site region 32493
Tssr32494 3 157566868 to 157566891 23 + TSS region transcription start site region 32494
Tssr32495 3 157566916 to 157566921 5 + TSS region transcription start site region 32495
Tssr32496 3 157566940 to 157566952 12 + TSS region transcription start site region 32496
Gm33466 3 157720404 to 157726408 6004 - lincRNA gene predicted gene, 33466
Tssr32497 3 157751811 to 157751845 34 + TSS region transcription start site region 32497
Tssr32498 3 157768099 to 157768104 5 + TSS region transcription start site region 32498
Gm5550 3 157816720 to 157817795 1075 - pseudogene predicted gene 5550
Gm6520 3 157888465 to 157888874 409 - pseudogene predicted gene 6520
Tssr36291 3 157888921 to 157888928 7 - TSS region transcription start site region 36291
Cth 3 157894248 to 157925077 30829 - protein coding gene cystathionase (cystathionine gamma-lyase)
Gm43314 3 157894961 to 157897191 2230 - unclassified gene predicted gene 43314
Tssr36292 3 157900422 to 157900430 8 - TSS region transcription start site region 36292
Tssr36293 3 157906271 to 157906303 32 - TSS region transcription start site region 36293
Tssr36294 3 157909596 to 157909607 11 - TSS region transcription start site region 36294
Cpgi13977 3 157924766 to 157925425 659 CpG island CpG island 13977
Tssr36295 3 157924859 to 157924877 18 - TSS region transcription start site region 36295
Tssr36296 3 157925056 to 157925070 14 - TSS region transcription start site region 36296
1810013D15Rik 3 157925220 to 157938355 13135 + antisense lncRNA gene RIKEN cDNA 1810013D15 gene
Ankrd13c 3 157946779 to 158006837 60058 + protein coding gene ankyrin repeat domain 13c
Cpgi13978 3 157946834 to 157948325 1491 CpG island CpG island 13978
Tssr32499 3 157946954 to 157946993 39 + TSS region transcription start site region 32499
Tssr32500 3 157946995 to 157947041 46 + TSS region transcription start site region 32500
Tssr32501 3 157947047 to 157947066 19 + TSS region transcription start site region 32501
Tssr32502 3 157947213 to 157947244 31 + TSS region transcription start site region 32502
Tssr32503 3 157947245 to 157947260 15 + TSS region transcription start site region 32503
Tssr32504 3 157947495 to 157947510 15 + TSS region transcription start site region 32504
Gm42611 3 157980248 to 157983654 3406 + unclassified gene predicted gene 42611
Tssr32505 3 157993605 to 157993620 15 + TSS region transcription start site region 32505
Tssr32506 3 157993626 to 157993652 26 + TSS region transcription start site region 32506
Tssr32507 3 157993658 to 157993669 11 + TSS region transcription start site region 32507
Tssr32508 3 157993718 to 157993731 13 + TSS region transcription start site region 32508
Tssr32509 3 158006633 to 158006637 4 + TSS region transcription start site region 32509
Srsf11 3 158010493 to 158036647 26154 - protein coding gene serine/arginine-rich splicing factor 11
Tssr36297 3 158016346 to 158016359 13 - TSS region transcription start site region 36297
Tssr1106 3 158016368 to 158016383 15 - TSS region transcription start site region 1106
Tssr36298 3 158016419 to 158016435 16 - TSS region transcription start site region 36298
Tssr36299 3 158021400 to 158021430 30 - TSS region transcription start site region 36299
Tssr36300 3 158024005 to 158024024 19 - TSS region transcription start site region 36300
Tssr36301 3 158024685 to 158024695 10 - TSS region transcription start site region 36301
Tssr36302 3 158029239 to 158029244 5 - TSS region transcription start site region 36302
Cpgi13979 3 158031291 to 158032017 726 CpG island CpG island 13979
Tssr36303 3 158031648 to 158031691 43 - TSS region transcription start site region 36303
Tssr36304 3 158031705 to 158031774 69 - TSS region transcription start site region 36304
Gm43362 3 158033940 to 158036409 2469 - unclassified gene predicted gene 43362
Cpgi13980 3 158036162 to 158037096 934 CpG island CpG island 13980
Tssr36305 3 158036545 to 158036565 20 - TSS region transcription start site region 36305
Tssr36306 3 158036566 to 158036629 63 - TSS region transcription start site region 36306
Tssr36307 3 158036630 to 158036647 17 - TSS region transcription start site region 36307
Lrrc40 3 158036682 to 158067090 30408 + protein coding gene leucine rich repeat containing 40
Tssr32510 3 158036694 to 158036728 34 + TSS region transcription start site region 32510
Tssr32511 3 158038346 to 158038351 5 + TSS region transcription start site region 32511
B230334C09Rik 3 158067186 to 158076112 8926 - antisense lncRNA gene RIKEN cDNA B230334C09 gene
Lrrc7 3 158082891 to 158562221 479330 - protein coding gene leucine rich repeat containing 7
Tssr36308 3 158171801 to 158171804 3 - TSS region transcription start site region 36308
Gm42968 3 158180236 to 158181607 1371 + unclassified gene predicted gene 42968
Gm43485 3 158206869 to 158208578 1709 + unclassified gene predicted gene 43485
Tssr36309 3 158282205 to 158282209 4 - TSS region transcription start site region 36309
Gm43486 3 158294414 to 158298752 4338 + unclassified gene predicted gene 43486