Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:156462662-157953860

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scc7 3 143647225 to 156658471 13011246 QTL colon tumor susceptibility 7
D3Mit201 3 156535753 to 156535872 119 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 201
4930570G19Rik 3 156546753 to 156561746 14993 - lincRNA gene RIKEN cDNA 4930570G19 gene
Cpgi13974 3 156560692 to 156562634 1942 CpG island CpG island 13974
Tssr36286 3 156561747 to 156561775 28 - TSS region transcription start site region 36286
Tssr32476 3 156561792 to 156561869 77 + TSS region transcription start site region 32476
Negr1 3 156561794 to 157316445 754651 + protein coding gene neuronal growth regulator 1
Tssr32477 3 156561950 to 156561993 43 + TSS region transcription start site region 32477
Tssr32478 3 156562095 to 156562133 38 + TSS region transcription start site region 32478
Tssr32479 3 156562141 to 156562196 55 + TSS region transcription start site region 32479
Tssr32480 3 156562671 to 156562690 19 + TSS region transcription start site region 32480
Tssr32481 3 156562785 to 156562796 11 + TSS region transcription start site region 32481
Tssr36287 3 156606137 to 156606139 2 - TSS region transcription start site region 36287
Tssr1104 3 156642174 to 156642181 7 + TSS region transcription start site region 1104
Tssr32482 3 156643703 to 156643707 4 + TSS region transcription start site region 32482
Gm42946 3 156646320 to 156648889 2569 + unclassified gene predicted gene 42946
Tssr32483 3 156646633 to 156646636 3 + TSS region transcription start site region 32483
D3Mit163 3 156658328 to 156658471 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 163
Tssr32484 3 156666555 to 156666558 3 + TSS region transcription start site region 32484
D3Mit365 3 156693258 to 156693407 149 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-365
Gm42942 3 156703900 to 156705227 1327 + unclassified gene predicted gene 42942
Tssr32485 3 156703905 to 156703917 12 + TSS region transcription start site region 32485
Gm42943 3 156731098 to 156734339 3241 + unclassified gene predicted gene 42943
Tssr32486 3 156734745 to 156734747 2 + TSS region transcription start site region 32486
Gm43528 3 156737540 to 156739213 1673 + unclassified gene predicted gene 43528
Tssr32487 3 156740761 to 156740764 3 + TSS region transcription start site region 32487
Tssr32488 3 156770882 to 156770916 34 + TSS region transcription start site region 32488
Gm15578 3 156816037 to 156816511 474 + pseudogene predicted gene 15578
D3Mit89 3 156837105 to 156837325 220 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 89
Tssr1105 3 156852200 to 156852202 2 + TSS region transcription start site region 1105
Gm15577 3 156903863 to 156920780 16917 - antisense lncRNA gene predicted gene 15577
Tssr36288 3 156920751 to 156920785 34 - TSS region transcription start site region 36288
Gm43527 3 157000417 to 157003594 3177 + unclassified gene predicted gene 43527
Gm43526 3 157071744 to 157073308 1564 + unclassified gene predicted gene 43526
Eih5 3 157139788 to 85418436 -71721352 QTL ethanol induced hypothermia 5
4930566N20Rik 3 157207662 to 157208860 1198 - unclassified gene RIKEN cDNA 4930566N20 gene
Gm24373 3 157210929 to 157211060 131 + snoRNA gene predicted gene, 24373
Gm23725 3 157237225 to 157237331 106 - snRNA gene predicted gene, 23725
Gm22458 3 157365998 to 157366104 106 + snRNA gene predicted gene, 22458
Gm23379 3 157398262 to 157398368 106 - snRNA gene predicted gene, 23379
Gm5983 3 157410017 to 157410786 769 + pseudogene predicted gene 5983
4930592C13Rik 3 157527515 to 157534090 6575 - antisense lncRNA gene RIKEN cDNA 4930592C13 gene
Cpgi13975 3 157533910 to 157535079 1169 CpG island CpG island 13975
Tssr36289 3 157534062 to 157534075 13 - TSS region transcription start site region 36289
Tssr36290 3 157534077 to 157534094 17 - TSS region transcription start site region 36290
Tssr32489 3 157534103 to 157534160 57 + TSS region transcription start site region 32489
Zranb2 3 157534151 to 157548341 14190 + protein coding gene zinc finger, RAN-binding domain containing 2
Tssr32490 3 157534351 to 157534411 60 + TSS region transcription start site region 32490
Tssr32491 3 157536546 to 157536557 11 + TSS region transcription start site region 32491
Mir186 3 157544279 to 157544349 70 + miRNA gene microRNA 186
Tssr32492 3 157548818 to 157548821 3 + TSS region transcription start site region 32492
Cpgi13976 3 157566625 to 157568179 1554 CpG island CpG island 13976
Ptger3 3 157566816 to 157644758 77942 + protein coding gene prostaglandin E receptor 3 (subtype EP3)
Tssr32493 3 157566854 to 157566863 9 + TSS region transcription start site region 32493
Tssr32494 3 157566868 to 157566891 23 + TSS region transcription start site region 32494
Tssr32495 3 157566916 to 157566921 5 + TSS region transcription start site region 32495
Tssr32496 3 157566940 to 157566952 12 + TSS region transcription start site region 32496
Gm33466 3 157720404 to 157726408 6004 - lincRNA gene predicted gene, 33466
Tssr32497 3 157751811 to 157751845 34 + TSS region transcription start site region 32497
Tssr32498 3 157768099 to 157768104 5 + TSS region transcription start site region 32498
Gm5550 3 157816720 to 157817795 1075 - pseudogene predicted gene 5550
Gm6520 3 157888465 to 157888874 409 - pseudogene predicted gene 6520
Tssr36291 3 157888921 to 157888928 7 - TSS region transcription start site region 36291
Cth 3 157894248 to 157925077 30829 - protein coding gene cystathionase (cystathionine gamma-lyase)
Gm43314 3 157894961 to 157897191 2230 - unclassified gene predicted gene 43314
Tssr36292 3 157900422 to 157900430 8 - TSS region transcription start site region 36292
Tssr36293 3 157906271 to 157906303 32 - TSS region transcription start site region 36293
Tssr36294 3 157909596 to 157909607 11 - TSS region transcription start site region 36294
Cpgi13977 3 157924766 to 157925425 659 CpG island CpG island 13977
Tssr36295 3 157924859 to 157924877 18 - TSS region transcription start site region 36295
Tssr36296 3 157925056 to 157925070 14 - TSS region transcription start site region 36296
1810013D15Rik 3 157925220 to 157938355 13135 + antisense lncRNA gene RIKEN cDNA 1810013D15 gene
Ankrd13c 3 157946779 to 158006837 60058 + protein coding gene ankyrin repeat domain 13c
Cpgi13978 3 157946834 to 157948325 1491 CpG island CpG island 13978
Tssr32499 3 157946954 to 157946993 39 + TSS region transcription start site region 32499
Tssr32500 3 157946995 to 157947041 46 + TSS region transcription start site region 32500
Tssr32501 3 157947047 to 157947066 19 + TSS region transcription start site region 32501
Tssr32502 3 157947213 to 157947244 31 + TSS region transcription start site region 32502
Tssr32503 3 157947245 to 157947260 15 + TSS region transcription start site region 32503
Tssr32504 3 157947495 to 157947510 15 + TSS region transcription start site region 32504