Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:156272213-159622244

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143 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scc7 3 143647225 to 156658471 13011246 QTL colon tumor susceptibility 7
Gm33311 3 156367559 to 156380647 13088 - lncRNA gene predicted gene, 33311
Tssr36285 3 156380649 to 156380656 7 - TSS region transcription start site region 36285
D3Mit129 3 156412625 to 156412815 190 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 129
D3Mit201 3 156535753 to 156535872 119 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 201
4930570G19Rik 3 156546753 to 156561746 14993 - lincRNA gene RIKEN cDNA 4930570G19 gene
Cpgi13974 3 156560692 to 156562634 1942 CpG island CpG island 13974
Tssr36286 3 156561747 to 156561775 28 - TSS region transcription start site region 36286
Tssr32476 3 156561792 to 156561869 77 + TSS region transcription start site region 32476
Negr1 3 156561794 to 157316445 754651 + protein coding gene neuronal growth regulator 1
Tssr32477 3 156561950 to 156561993 43 + TSS region transcription start site region 32477
Tssr32478 3 156562095 to 156562133 38 + TSS region transcription start site region 32478
Tssr32479 3 156562141 to 156562196 55 + TSS region transcription start site region 32479
Tssr32480 3 156562671 to 156562690 19 + TSS region transcription start site region 32480
Tssr32481 3 156562785 to 156562796 11 + TSS region transcription start site region 32481
Tssr36287 3 156606137 to 156606139 2 - TSS region transcription start site region 36287
Tssr1104 3 156642174 to 156642181 7 + TSS region transcription start site region 1104
Tssr32482 3 156643703 to 156643707 4 + TSS region transcription start site region 32482
Gm42946 3 156646320 to 156648889 2569 + unclassified gene predicted gene 42946
Tssr32483 3 156646633 to 156646636 3 + TSS region transcription start site region 32483
D3Mit163 3 156658328 to 156658471 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 163
Tssr32484 3 156666555 to 156666558 3 + TSS region transcription start site region 32484
D3Mit365 3 156693258 to 156693407 149 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-365
Gm42942 3 156703900 to 156705227 1327 + unclassified gene predicted gene 42942
Tssr32485 3 156703905 to 156703917 12 + TSS region transcription start site region 32485
Gm42943 3 156731098 to 156734339 3241 + unclassified gene predicted gene 42943
Tssr32486 3 156734745 to 156734747 2 + TSS region transcription start site region 32486
Gm43528 3 156737540 to 156739213 1673 + unclassified gene predicted gene 43528
Tssr32487 3 156740761 to 156740764 3 + TSS region transcription start site region 32487
Tssr32488 3 156770882 to 156770916 34 + TSS region transcription start site region 32488
Gm15578 3 156816037 to 156816511 474 + pseudogene predicted gene 15578
D3Mit89 3 156837105 to 156837325 220 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 89
Tssr1105 3 156852200 to 156852202 2 + TSS region transcription start site region 1105
Gm15577 3 156903863 to 156920780 16917 - antisense lncRNA gene predicted gene 15577
Tssr36288 3 156920751 to 156920785 34 - TSS region transcription start site region 36288
Gm43527 3 157000417 to 157003594 3177 + unclassified gene predicted gene 43527
Gm43526 3 157071744 to 157073308 1564 + unclassified gene predicted gene 43526
Eih5 3 157139788 to 85418436 -71721352 QTL ethanol induced hypothermia 5
4930566N20Rik 3 157207662 to 157208860 1198 - unclassified gene RIKEN cDNA 4930566N20 gene
Gm24373 3 157210929 to 157211060 131 + snoRNA gene predicted gene, 24373
Gm23725 3 157237225 to 157237331 106 - snRNA gene predicted gene, 23725
Gm22458 3 157365998 to 157366104 106 + snRNA gene predicted gene, 22458
Gm23379 3 157398262 to 157398368 106 - snRNA gene predicted gene, 23379
Gm5983 3 157410017 to 157410786 769 + pseudogene predicted gene 5983
4930592C13Rik 3 157527515 to 157534090 6575 - antisense lncRNA gene RIKEN cDNA 4930592C13 gene
Cpgi13975 3 157533910 to 157535079 1169 CpG island CpG island 13975
Tssr36289 3 157534062 to 157534075 13 - TSS region transcription start site region 36289
Tssr36290 3 157534077 to 157534094 17 - TSS region transcription start site region 36290
Tssr32489 3 157534103 to 157534160 57 + TSS region transcription start site region 32489
Zranb2 3 157534151 to 157548341 14190 + protein coding gene zinc finger, RAN-binding domain containing 2
Tssr32490 3 157534351 to 157534411 60 + TSS region transcription start site region 32490
Tssr32491 3 157536546 to 157536557 11 + TSS region transcription start site region 32491
Mir186 3 157544279 to 157544349 70 + miRNA gene microRNA 186
Tssr32492 3 157548818 to 157548821 3 + TSS region transcription start site region 32492
Cpgi13976 3 157566625 to 157568179 1554 CpG island CpG island 13976
Ptger3 3 157566816 to 157644758 77942 + protein coding gene prostaglandin E receptor 3 (subtype EP3)
Tssr32493 3 157566854 to 157566863 9 + TSS region transcription start site region 32493
Tssr32494 3 157566868 to 157566891 23 + TSS region transcription start site region 32494
Tssr32495 3 157566916 to 157566921 5 + TSS region transcription start site region 32495
Tssr32496 3 157566940 to 157566952 12 + TSS region transcription start site region 32496
Gm33466 3 157720404 to 157726408 6004 - lincRNA gene predicted gene, 33466
Tssr32497 3 157751811 to 157751845 34 + TSS region transcription start site region 32497
Tssr32498 3 157768099 to 157768104 5 + TSS region transcription start site region 32498
Gm5550 3 157816720 to 157817795 1075 - pseudogene predicted gene 5550
Gm6520 3 157888465 to 157888874 409 - pseudogene predicted gene 6520
Tssr36291 3 157888921 to 157888928 7 - TSS region transcription start site region 36291
Cth 3 157894248 to 157925077 30829 - protein coding gene cystathionase (cystathionine gamma-lyase)
Gm43314 3 157894961 to 157897191 2230 - unclassified gene predicted gene 43314
Tssr36292 3 157900422 to 157900430 8 - TSS region transcription start site region 36292
Tssr36293 3 157906271 to 157906303 32 - TSS region transcription start site region 36293
Tssr36294 3 157909596 to 157909607 11 - TSS region transcription start site region 36294
Cpgi13977 3 157924766 to 157925425 659 CpG island CpG island 13977
Tssr36295 3 157924859 to 157924877 18 - TSS region transcription start site region 36295
Tssr36296 3 157925056 to 157925070 14 - TSS region transcription start site region 36296
1810013D15Rik 3 157925220 to 157938355 13135 + antisense lncRNA gene RIKEN cDNA 1810013D15 gene
Ankrd13c 3 157946779 to 158006837 60058 + protein coding gene ankyrin repeat domain 13c
Cpgi13978 3 157946834 to 157948325 1491 CpG island CpG island 13978
Tssr32499 3 157946954 to 157946993 39 + TSS region transcription start site region 32499
Tssr32500 3 157946995 to 157947041 46 + TSS region transcription start site region 32500
Tssr32501 3 157947047 to 157947066 19 + TSS region transcription start site region 32501
Tssr32502 3 157947213 to 157947244 31 + TSS region transcription start site region 32502
Tssr32503 3 157947245 to 157947260 15 + TSS region transcription start site region 32503
Tssr32504 3 157947495 to 157947510 15 + TSS region transcription start site region 32504
Gm42611 3 157980248 to 157983654 3406 + unclassified gene predicted gene 42611
Tssr32505 3 157993605 to 157993620 15 + TSS region transcription start site region 32505
Tssr32506 3 157993626 to 157993652 26 + TSS region transcription start site region 32506
Tssr32507 3 157993658 to 157993669 11 + TSS region transcription start site region 32507
Tssr32508 3 157993718 to 157993731 13 + TSS region transcription start site region 32508
Tssr32509 3 158006633 to 158006637 4 + TSS region transcription start site region 32509
Srsf11 3 158010493 to 158036647 26154 - protein coding gene serine/arginine-rich splicing factor 11
Tssr36297 3 158016346 to 158016359 13 - TSS region transcription start site region 36297
Tssr1106 3 158016368 to 158016383 15 - TSS region transcription start site region 1106
Tssr36298 3 158016419 to 158016435 16 - TSS region transcription start site region 36298
Tssr36299 3 158021400 to 158021430 30 - TSS region transcription start site region 36299
Tssr36300 3 158024005 to 158024024 19 - TSS region transcription start site region 36300
Tssr36301 3 158024685 to 158024695 10 - TSS region transcription start site region 36301
Tssr36302 3 158029239 to 158029244 5 - TSS region transcription start site region 36302
Cpgi13979 3 158031291 to 158032017 726 CpG island CpG island 13979
Tssr36303 3 158031648 to 158031691 43 - TSS region transcription start site region 36303
Tssr36304 3 158031705 to 158031774 69 - TSS region transcription start site region 36304
Gm43362 3 158033940 to 158036409 2469 - unclassified gene predicted gene 43362
Cpgi13980 3 158036162 to 158037096 934 CpG island CpG island 13980
Tssr36305 3 158036545 to 158036565 20 - TSS region transcription start site region 36305
Tssr36306 3 158036566 to 158036629 63 - TSS region transcription start site region 36306
Tssr36307 3 158036630 to 158036647 17 - TSS region transcription start site region 36307
Lrrc40 3 158036682 to 158067090 30408 + protein coding gene leucine rich repeat containing 40
Tssr32510 3 158036694 to 158036728 34 + TSS region transcription start site region 32510
Tssr32511 3 158038346 to 158038351 5 + TSS region transcription start site region 32511
B230334C09Rik 3 158067186 to 158076112 8926 - antisense lncRNA gene RIKEN cDNA B230334C09 gene
Lrrc7 3 158082891 to 158562221 479330 - protein coding gene leucine rich repeat containing 7
Tssr36308 3 158171801 to 158171804 3 - TSS region transcription start site region 36308
Gm42968 3 158180236 to 158181607 1371 + unclassified gene predicted gene 42968
Gm43485 3 158206869 to 158208578 1709 + unclassified gene predicted gene 43485
Tssr36309 3 158282205 to 158282209 4 - TSS region transcription start site region 36309
Gm43486 3 158294414 to 158298752 4338 + unclassified gene predicted gene 43486
Gm43487 3 158488991 to 158490021 1030 + unclassified gene predicted gene 43487
Tssr36310 3 158528923 to 158528938 15 - TSS region transcription start site region 36310
Tssr36311 3 158543348 to 158543375 27 - TSS region transcription start site region 36311
Cpgi13981 3 158560966 to 158562536 1570 CpG island CpG island 13981
Tssr36312 3 158561334 to 158561347 13 - TSS region transcription start site region 36312
Tssr36313 3 158561358 to 158561422 64 - TSS region transcription start site region 36313
Tssr36314 3 158561541 to 158561550 9 - TSS region transcription start site region 36314
Tssr36315 3 158561583 to 158561592 9 - TSS region transcription start site region 36315
Tssr36316 3 158561739 to 158561798 59 - TSS region transcription start site region 36316
Tssr36317 3 158562199 to 158562290 91 - TSS region transcription start site region 36317
Gm3092 3 158808682 to 158809728 1046 + pseudogene predicted gene 3092
Tssr32512 3 158897607 to 158897610 3 + TSS region transcription start site region 32512
Tssr1107 3 158949715 to 158949741 26 + TSS region transcription start site region 1107
Tssr32513 3 158960375 to 158960377 2 + TSS region transcription start site region 32513
Gm9423 3 158960446 to 158961442 996 + pseudogene predicted gene 9423
Gm20752 3 159076364 to 159308080 231716 + lincRNA gene predicted gene, 20752
Gm9424 3 159488347 to 159490476 2129 - pseudogene predicted gene 9424
Gm40187 3 159490995 to 159495390 4395 - lncRNA gene predicted gene, 40187
Gm43655 3 159491418 to 159491639 221 + pseudogene predicted gene 43655
Cpgi13982 3 159495236 to 159495607 371 CpG island CpG island 13982
Tssr32514 3 159495408 to 159495438 30 + TSS region transcription start site region 32514
Depdc1a 3 159495433 to 159529955 34522 + protein coding gene DEP domain containing 1a
Tssr1108 3 159495440 to 159495454 14 + TSS region transcription start site region 1108
Tssr1109 3 159495455 to 159495471 16 + TSS region transcription start site region 1109
Tssr1110 3 159495477 to 159495488 11 + TSS region transcription start site region 1110
Tssr32515 3 159528826 to 159528830 4 + TSS region transcription start site region 32515
Rpe65 3 159599175 to 159625321 26146 + protein coding gene retinal pigment epithelium 65
Tssr32516 3 159599177 to 159599191 14 + TSS region transcription start site region 32516