Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:154617141-158507196

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192 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scc7 3 143647225 to 156658471 13011246 QTL colon tumor susceptibility 7
Cryz 3 154596711 to 154623182 26471 + protein coding gene crystallin, zeta
Tssr32454 3 154620884 to 154620890 6 + TSS region transcription start site region 32454
Tssr36267 3 154632394 to 154632407 13 - TSS region transcription start site region 36267
Cpgi13971 3 154647162 to 154647394 232 CpG island CpG island 13971
Gm38139 3 154656701 to 154680269 23568 + sense overlapping lncRNA gene predicted gene, 38139
Tssr1101 3 154664003 to 154664026 23 + TSS region transcription start site region 1101
Cpgi13972 3 154664073 to 154664383 310 CpG island CpG island 13972
Tssr32455 3 154664161 to 154664212 51 + TSS region transcription start site region 32455
D3Mit162 3 154674245 to 154674394 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 162
Tssr32456 3 154707619 to 154707627 8 + TSS region transcription start site region 32456
Tssr32457 3 154707630 to 154707654 24 + TSS region transcription start site region 32457
Gm20389 3 154708658 to 154711343 2685 - antisense lncRNA gene predicted gene 20389
Tssr36268 3 154711034 to 154711043 9 - TSS region transcription start site region 36268
Tssr36269 3 154711048 to 154711069 21 - TSS region transcription start site region 36269
Tssr32458 3 154711085 to 154711096 11 + TSS region transcription start site region 32458
Tssr32459 3 154711097 to 154711107 10 + TSS region transcription start site region 32459
Tssr32460 3 154711108 to 154711121 13 + TSS region transcription start site region 32460
Tssr32461 3 154711125 to 154711133 8 + TSS region transcription start site region 32461
Erich3 3 154711133 to 154749012 37879 + protein coding gene glutamate rich 3
Tssr32462 3 154711139 to 154711144 5 + TSS region transcription start site region 32462
Tssr32463 3 154711151 to 154711162 11 + TSS region transcription start site region 32463
Tssr36270 3 154711321 to 154711329 8 - TSS region transcription start site region 36270
Tssr36271 3 154711333 to 154711350 17 - TSS region transcription start site region 36271
Tssr32464 3 154711390 to 154711402 12 + TSS region transcription start site region 32464
Tssr1102 3 154711410 to 154711416 6 + TSS region transcription start site region 1102
Tssr1103 3 154711423 to 154711428 5 + TSS region transcription start site region 1103
Tssr32465 3 154718077 to 154718091 14 + TSS region transcription start site region 32465
Tssr32466 3 154718092 to 154718110 18 + TSS region transcription start site region 32466
Tnni3k 3 154786291 to 155055407 269116 - protein coding gene TNNI3 interacting kinase
Tssr32467 3 154796220 to 154796231 11 + TSS region transcription start site region 32467
Tssr32468 3 154796267 to 154796276 9 + TSS region transcription start site region 32468
Tssr32469 3 154796282 to 154796289 7 + TSS region transcription start site region 32469
Tssr36272 3 154821769 to 154821773 4 - TSS region transcription start site region 36272
Gm18589 3 154842009 to 154842587 578 + pseudogene predicted gene, 18589
Tssr36273 3 154847347 to 154847358 11 - TSS region transcription start site region 36273
Tssr36274 3 154847426 to 154847438 12 - TSS region transcription start site region 36274
Gm37890 3 154921296 to 154925287 3991 + unclassified gene predicted gene, 37890
D3Mit115 3 154936414 to 154936555 141 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 115
D3Mit234 3 154946746 to 154946932 186 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 234
D3Mit219 3 154979422 to 154979567 145 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 219
Tssr36275 3 155025062 to 155025080 18 - TSS region transcription start site region 36275
Tssr36276 3 155025198 to 155025200 2 - TSS region transcription start site region 36276
Tssr36277 3 155025443 to 155025453 10 - TSS region transcription start site region 36277
Tssr36278 3 155030317 to 155030353 36 - TSS region transcription start site region 36278
Tssr36279 3 155055315 to 155055322 7 - TSS region transcription start site region 36279
Tssr36280 3 155055341 to 155055370 29 - TSS region transcription start site region 36280
Fpgt 3 155084915 to 155093378 8463 - protein coding gene fucose-1-phosphate guanylyltransferase
Tssr36281 3 155091150 to 155091153 3 - TSS region transcription start site region 36281
Gm26456 3 155092018 to 155092128 110 + unclassified non-coding RNA gene predicted gene, 26456
Cpgi13973 3 155093133 to 155093802 669 CpG island CpG island 13973
Tssr36282 3 155093193 to 155093240 47 - TSS region transcription start site region 36282
Tssr36283 3 155093346 to 155093385 39 - TSS region transcription start site region 36283
Tssr32470 3 155093414 to 155093475 61 + TSS region transcription start site region 32470
Lrriq3 3 155093434 to 155194278 100844 + protein coding gene leucine-rich repeats and IQ motif containing 3
Tssr32471 3 155093502 to 155093544 42 + TSS region transcription start site region 32471
Tssr32472 3 155093559 to 155093573 14 + TSS region transcription start site region 32472
Tssr32473 3 155093587 to 155093597 10 + TSS region transcription start site region 32473
Gm37482 3 155094865 to 155097655 2790 + unclassified gene predicted gene, 37482
Gm5285 3 155276058 to 155276723 665 - pseudogene predicted gene 5285
Tssr36284 3 155352825 to 155352827 2 - TSS region transcription start site region 36284
Scp2-ps1 3 155514441 to 155515311 870 + pseudogene sterol carrier protein 2, pseudogene 1
Tssr32474 3 155514443 to 155514463 20 + TSS region transcription start site region 32474
Tssr32475 3 155514485 to 155514502 17 + TSS region transcription start site region 32475
Gm33266 3 155532482 to 155558900 26418 + lncRNA gene predicted gene, 33266
Gm37449 3 155754971 to 155755240 269 - pseudogene predicted gene, 37449
Gm37324 3 155771325 to 155775828 4503 - unclassified gene predicted gene, 37324
Gm23038 3 155788365 to 155788468 103 - snRNA gene predicted gene, 23038
Gm37102 3 155903348 to 155904452 1104 + pseudogene predicted gene, 37102
Gm37515 3 155904509 to 155908325 3816 + pseudogene predicted gene, 37515
4930480I08Rik 3 155969438 to 155970284 846 unclassified gene RIKEN cDNA 4930480I08 gene
9330178D15Rik 3 155976354 to 156008592 32238 + lincRNA gene RIKEN cDNA 9330178D15 gene
Gm42947 3 156040102 to 156045856 5754 - lincRNA gene predicted gene 42947
Gm6510 3 156060891 to 156062063 1172 + pseudogene predicted gene 6510
D3Mit303 3 156103788 to 156103876 88 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 303
D3Mit303.2 3 156103856 to 156103967 111 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 303.2
Gm42886 3 156264586 to 156265051 465 + pseudogene predicted gene 42886
Gm33311 3 156367559 to 156380647 13088 - lncRNA gene predicted gene, 33311
Tssr36285 3 156380649 to 156380656 7 - TSS region transcription start site region 36285
D3Mit129 3 156412625 to 156412815 190 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 129
D3Mit201 3 156535753 to 156535872 119 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 201
4930570G19Rik 3 156546753 to 156561746 14993 - lincRNA gene RIKEN cDNA 4930570G19 gene
Cpgi13974 3 156560692 to 156562634 1942 CpG island CpG island 13974
Tssr36286 3 156561747 to 156561775 28 - TSS region transcription start site region 36286
Tssr32476 3 156561792 to 156561869 77 + TSS region transcription start site region 32476
Negr1 3 156561794 to 157316445 754651 + protein coding gene neuronal growth regulator 1
Tssr32477 3 156561950 to 156561993 43 + TSS region transcription start site region 32477
Tssr32478 3 156562095 to 156562133 38 + TSS region transcription start site region 32478
Tssr32479 3 156562141 to 156562196 55 + TSS region transcription start site region 32479
Tssr32480 3 156562671 to 156562690 19 + TSS region transcription start site region 32480
Tssr32481 3 156562785 to 156562796 11 + TSS region transcription start site region 32481
Tssr36287 3 156606137 to 156606139 2 - TSS region transcription start site region 36287
Tssr1104 3 156642174 to 156642181 7 + TSS region transcription start site region 1104
Tssr32482 3 156643703 to 156643707 4 + TSS region transcription start site region 32482
Gm42946 3 156646320 to 156648889 2569 + unclassified gene predicted gene 42946
Tssr32483 3 156646633 to 156646636 3 + TSS region transcription start site region 32483
D3Mit163 3 156658328 to 156658471 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 163
Tssr32484 3 156666555 to 156666558 3 + TSS region transcription start site region 32484
D3Mit365 3 156693258 to 156693407 149 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-365
Gm42942 3 156703900 to 156705227 1327 + unclassified gene predicted gene 42942
Tssr32485 3 156703905 to 156703917 12 + TSS region transcription start site region 32485
Gm42943 3 156731098 to 156734339 3241 + unclassified gene predicted gene 42943
Tssr32486 3 156734745 to 156734747 2 + TSS region transcription start site region 32486
Gm43528 3 156737540 to 156739213 1673 + unclassified gene predicted gene 43528
Tssr32487 3 156740761 to 156740764 3 + TSS region transcription start site region 32487
Tssr32488 3 156770882 to 156770916 34 + TSS region transcription start site region 32488
Gm15578 3 156816037 to 156816511 474 + pseudogene predicted gene 15578
D3Mit89 3 156837105 to 156837325 220 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 89
Tssr1105 3 156852200 to 156852202 2 + TSS region transcription start site region 1105
Gm15577 3 156903863 to 156920780 16917 - antisense lncRNA gene predicted gene 15577
Tssr36288 3 156920751 to 156920785 34 - TSS region transcription start site region 36288
Gm43527 3 157000417 to 157003594 3177 + unclassified gene predicted gene 43527
Gm43526 3 157071744 to 157073308 1564 + unclassified gene predicted gene 43526
Eih5 3 157139788 to 85418436 -71721352 QTL ethanol induced hypothermia 5
4930566N20Rik 3 157207662 to 157208860 1198 - unclassified gene RIKEN cDNA 4930566N20 gene
Gm24373 3 157210929 to 157211060 131 + snoRNA gene predicted gene, 24373
Gm23725 3 157237225 to 157237331 106 - snRNA gene predicted gene, 23725
Gm22458 3 157365998 to 157366104 106 + snRNA gene predicted gene, 22458
Gm23379 3 157398262 to 157398368 106 - snRNA gene predicted gene, 23379
Gm5983 3 157410017 to 157410786 769 + pseudogene predicted gene 5983
4930592C13Rik 3 157527515 to 157534090 6575 - antisense lncRNA gene RIKEN cDNA 4930592C13 gene
Cpgi13975 3 157533910 to 157535079 1169 CpG island CpG island 13975
Tssr36289 3 157534062 to 157534075 13 - TSS region transcription start site region 36289
Tssr36290 3 157534077 to 157534094 17 - TSS region transcription start site region 36290
Tssr32489 3 157534103 to 157534160 57 + TSS region transcription start site region 32489
Zranb2 3 157534151 to 157548341 14190 + protein coding gene zinc finger, RAN-binding domain containing 2
Tssr32490 3 157534351 to 157534411 60 + TSS region transcription start site region 32490
Tssr32491 3 157536546 to 157536557 11 + TSS region transcription start site region 32491
Mir186 3 157544279 to 157544349 70 + miRNA gene microRNA 186
Tssr32492 3 157548818 to 157548821 3 + TSS region transcription start site region 32492
Cpgi13976 3 157566625 to 157568179 1554 CpG island CpG island 13976
Ptger3 3 157566816 to 157644758 77942 + protein coding gene prostaglandin E receptor 3 (subtype EP3)
Tssr32493 3 157566854 to 157566863 9 + TSS region transcription start site region 32493
Tssr32494 3 157566868 to 157566891 23 + TSS region transcription start site region 32494
Tssr32495 3 157566916 to 157566921 5 + TSS region transcription start site region 32495
Tssr32496 3 157566940 to 157566952 12 + TSS region transcription start site region 32496
Gm33466 3 157720404 to 157726408 6004 - lincRNA gene predicted gene, 33466
Tssr32497 3 157751811 to 157751845 34 + TSS region transcription start site region 32497
Tssr32498 3 157768099 to 157768104 5 + TSS region transcription start site region 32498
Gm5550 3 157816720 to 157817795 1075 - pseudogene predicted gene 5550
Gm6520 3 157888465 to 157888874 409 - pseudogene predicted gene 6520
Tssr36291 3 157888921 to 157888928 7 - TSS region transcription start site region 36291
Cth 3 157894248 to 157925077 30829 - protein coding gene cystathionase (cystathionine gamma-lyase)
Gm43314 3 157894961 to 157897191 2230 - unclassified gene predicted gene 43314
Tssr36292 3 157900422 to 157900430 8 - TSS region transcription start site region 36292
Tssr36293 3 157906271 to 157906303 32 - TSS region transcription start site region 36293
Tssr36294 3 157909596 to 157909607 11 - TSS region transcription start site region 36294
Cpgi13977 3 157924766 to 157925425 659 CpG island CpG island 13977
Tssr36295 3 157924859 to 157924877 18 - TSS region transcription start site region 36295
Tssr36296 3 157925056 to 157925070 14 - TSS region transcription start site region 36296
1810013D15Rik 3 157925220 to 157938355 13135 + antisense lncRNA gene RIKEN cDNA 1810013D15 gene
Ankrd13c 3 157946779 to 158006837 60058 + protein coding gene ankyrin repeat domain 13c
Cpgi13978 3 157946834 to 157948325 1491 CpG island CpG island 13978
Tssr32499 3 157946954 to 157946993 39 + TSS region transcription start site region 32499
Tssr32500 3 157946995 to 157947041 46 + TSS region transcription start site region 32500
Tssr32501 3 157947047 to 157947066 19 + TSS region transcription start site region 32501
Tssr32502 3 157947213 to 157947244 31 + TSS region transcription start site region 32502
Tssr32503 3 157947245 to 157947260 15 + TSS region transcription start site region 32503
Tssr32504 3 157947495 to 157947510 15 + TSS region transcription start site region 32504
Gm42611 3 157980248 to 157983654 3406 + unclassified gene predicted gene 42611
Tssr32505 3 157993605 to 157993620 15 + TSS region transcription start site region 32505
Tssr32506 3 157993626 to 157993652 26 + TSS region transcription start site region 32506
Tssr32507 3 157993658 to 157993669 11 + TSS region transcription start site region 32507
Tssr32508 3 157993718 to 157993731 13 + TSS region transcription start site region 32508
Tssr32509 3 158006633 to 158006637 4 + TSS region transcription start site region 32509
Srsf11 3 158010493 to 158036647 26154 - protein coding gene serine/arginine-rich splicing factor 11
Tssr36297 3 158016346 to 158016359 13 - TSS region transcription start site region 36297
Tssr1106 3 158016368 to 158016383 15 - TSS region transcription start site region 1106
Tssr36298 3 158016419 to 158016435 16 - TSS region transcription start site region 36298
Tssr36299 3 158021400 to 158021430 30 - TSS region transcription start site region 36299
Tssr36300 3 158024005 to 158024024 19 - TSS region transcription start site region 36300
Tssr36301 3 158024685 to 158024695 10 - TSS region transcription start site region 36301
Tssr36302 3 158029239 to 158029244 5 - TSS region transcription start site region 36302
Cpgi13979 3 158031291 to 158032017 726 CpG island CpG island 13979
Tssr36303 3 158031648 to 158031691 43 - TSS region transcription start site region 36303
Tssr36304 3 158031705 to 158031774 69 - TSS region transcription start site region 36304
Gm43362 3 158033940 to 158036409 2469 - unclassified gene predicted gene 43362
Cpgi13980 3 158036162 to 158037096 934 CpG island CpG island 13980
Tssr36305 3 158036545 to 158036565 20 - TSS region transcription start site region 36305
Tssr36306 3 158036566 to 158036629 63 - TSS region transcription start site region 36306
Tssr36307 3 158036630 to 158036647 17 - TSS region transcription start site region 36307
Lrrc40 3 158036682 to 158067090 30408 + protein coding gene leucine rich repeat containing 40
Tssr32510 3 158036694 to 158036728 34 + TSS region transcription start site region 32510
Tssr32511 3 158038346 to 158038351 5 + TSS region transcription start site region 32511
B230334C09Rik 3 158067186 to 158076112 8926 - antisense lncRNA gene RIKEN cDNA B230334C09 gene
Lrrc7 3 158082891 to 158562221 479330 - protein coding gene leucine rich repeat containing 7
Tssr36308 3 158171801 to 158171804 3 - TSS region transcription start site region 36308
Gm42968 3 158180236 to 158181607 1371 + unclassified gene predicted gene 42968
Gm43485 3 158206869 to 158208578 1709 + unclassified gene predicted gene 43485
Tssr36309 3 158282205 to 158282209 4 - TSS region transcription start site region 36309
Gm43486 3 158294414 to 158298752 4338 + unclassified gene predicted gene 43486
Gm43487 3 158488991 to 158490021 1030 + unclassified gene predicted gene 43487