Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:153969782-154569957

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi13965 3 153973023 to 153974010 987 CpG island CpG island 13965
Slc44a5 3 153973436 to 154271722 298286 + protein coding gene solute carrier family 44, member 5
Tssr32441 3 153973491 to 153973520 29 + TSS region transcription start site region 32441
Tssr32442 3 153973625 to 153973690 65 + TSS region transcription start site region 32442
D3Mit220 3 153997864 to 153998000 136 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 220
Tssr32443 3 154021339 to 154021346 7 + TSS region transcription start site region 32443
Gm40185 3 154080377 to 154086365 5988 - lncRNA gene predicted gene, 40185
Tssr36256 3 154091785 to 154091789 4 - TSS region transcription start site region 36256
Tssr36257 3 154094069 to 154094080 11 - TSS region transcription start site region 36257
Tssr36258 3 154094090 to 154094100 10 - TSS region transcription start site region 36258
Tssr36259 3 154094131 to 154094142 11 - TSS region transcription start site region 36259
Tssr36260 3 154094153 to 154094160 7 - TSS region transcription start site region 36260
Tssr32444 3 154132320 to 154132328 8 + TSS region transcription start site region 32444
Gm3076 3 154132340 to 154132790 450 + pseudogene predicted gene 3076
D3Mit58 3 154136716 to 154136860 144 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 58
Gm42541 3 154139097 to 154141345 2248 + unclassified gene predicted gene 42541
Gm32399 3 154185370 to 154197217 11847 - lncRNA gene predicted gene, 32399
Tssr32445 3 154193014 to 154193043 29 + TSS region transcription start site region 32445
Gm40184 3 154203720 to 154205047 1327 - lncRNA gene predicted gene, 40184
D3Mit59 3 154225961 to 154226165 204 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 59
Gm42540 3 154247493 to 154249500 2007 - unclassified gene predicted gene 42540
Cpgi13966 3 154269782 to 154269957 175 CpG island CpG island 13966
Lhx8 3 154306288 to 154330560 24272 - protein coding gene LIM homeobox protein 8
Tssr32446 3 154314090 to 154314094 4 + TSS region transcription start site region 32446
Cpgi13967 3 154327916 to 154328832 916 CpG island CpG island 13967
Tssr36261 3 154328643 to 154328663 20 - TSS region transcription start site region 36261
Cpgi13968 3 154329287 to 154330502 1215 CpG island CpG island 13968
Tssr36262 3 154330331 to 154330334 3 - TSS region transcription start site region 36262
Tssr36263 3 154330543 to 154330576 33 - TSS region transcription start site region 36263
AI606473 3 154330821 to 154334254 3433 + lncRNA gene expressed sequence AI606473
Cpgi13969 3 154332025 to 154332583 558 CpG island CpG island 13969
Gm2988 3 154523473 to 154524268 795 + pseudogene predicted gene 2988
D3Mit116 3 154541602 to 154541860 258 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 116
Gm40186 3 154558146 to 154567117 8971 - lncRNA gene predicted gene, 40186