Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:153635053-153935134

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
St6galnac3 3 153202509 to 153725133 522624 - protein coding gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
Tssr36234 3 153650126 to 153650143 17 - TSS region transcription start site region 36234
Tssr36235 3 153650235 to 153650252 17 - TSS region transcription start site region 36235
Tssr36236 3 153650254 to 153650268 14 - TSS region transcription start site region 36236
Tssr32433 3 153675360 to 153675371 11 + TSS region transcription start site region 32433
Tssr32434 3 153675393 to 153675396 3 + TSS region transcription start site region 32434
Gm5858 3 153691408 to 153694821 3413 - pseudogene predicted gene 5858
Tssr36237 3 153705691 to 153705703 12 - TSS region transcription start site region 36237
Tssr36238 3 153705802 to 153705819 17 - TSS region transcription start site region 36238
Gm22206 3 153708911 to 153709026 115 + snoRNA gene predicted gene, 22206
Tssr36239 3 153721044 to 153721057 13 - TSS region transcription start site region 36239
Tssr32435 3 153723905 to 153723913 8 + TSS region transcription start site region 32435
Cpgi13961 3 153724605 to 153725498 893 CpG island CpG island 13961
Tssr36240 3 153725104 to 153725179 75 - TSS region transcription start site region 36240
Tssr36241 3 153733909 to 153733929 20 - TSS region transcription start site region 36241
Gm43833 3 153749299 to 153749591 292 + pseudogene predicted gene 43833
Gm10042 3 153785053 to 153785134 81 + pseudogene predicted gene 10042
5730460C07Rik 3 153789305 to 153792087 2782 - lincRNA gene RIKEN cDNA 5730460C07 gene
Gm25757 3 153831170 to 153831292 122 + snoRNA gene predicted gene, 25757
Tssr32436 3 153844217 to 153844225 8 + TSS region transcription start site region 32436
Tssr32437 3 153844235 to 153844270 35 + TSS region transcription start site region 32437
Asb17 3 153844247 to 153853615 9368 + protein coding gene ankyrin repeat and SOCS box-containing 17
Tssr32438 3 153849865 to 153849893 28 + TSS region transcription start site region 32438
Asb17os 3 153850374 to 153852424 2050 - antisense lncRNA gene ankyrin repeat and SOCS box-containing 17, opposite strand
Tssr36242 3 153852390 to 153852412 22 - TSS region transcription start site region 36242
Tssr36243 3 153852414 to 153852428 14 - TSS region transcription start site region 36243
Tssr36244 3 153852430 to 153852447 17 - TSS region transcription start site region 36244
Tssr36245 3 153852483 to 153852485 2 - TSS region transcription start site region 36245
Msh4 3 153857149 to 153906138 48989 - protein coding gene mutS homolog 4
Gm24395 3 153864807 to 153864931 124 + snoRNA gene predicted gene, 24395
Tssr36246 3 153866614 to 153866619 5 - TSS region transcription start site region 36246
Cpgi13962 3 153905412 to 153906088 676 CpG island CpG island 13962
Tssr36247 3 153905855 to 153905862 7 - TSS region transcription start site region 36247
Rabggtb 3 153907289 to 153912966 5677 - protein coding gene Rab geranylgeranyl transferase, b subunit
Snord45b 3 153910567 to 153910611 44 - snoRNA gene small nucleolar RNA, C/D box 45B
Gm24494 3 153911610 to 153911690 80 - snoRNA gene predicted gene, 24494
Snord45c 3 153912129 to 153912189 60 - snoRNA gene small nucleolar RNA, C/D box 45C
Tssr36248 3 153912199 to 153912208 9 - TSS region transcription start site region 36248
Cpgi13963 3 153912582 to 153913310 728 CpG island CpG island 13963
Tssr36249 3 153912941 to 153912960 19 - TSS region transcription start site region 36249
Tssr36250 3 153912966 to 153912990 24 - TSS region transcription start site region 36250
Gm43400 3 153913095 to 153916858 3763 + antisense lncRNA gene predicted gene 43400
Acadm 3 153922357 to 153944632 22275 - protein coding gene acyl-Coenzyme A dehydrogenase, medium chain
Tssr36251 3 153929630 to 153929639 9 - TSS region transcription start site region 36251