Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:153449097-154831345

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149 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
St6galnac3 3 153202509 to 153725133 522624 - protein coding gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
1700015C17Rik 3 153467216 to 153478210 10994 - sense intronic lncRNA gene RIKEN cDNA 1700015C17 gene
4930597L12Rik 3 153473744 to 153474654 910 - unclassified non-coding RNA gene RIKEN cDNA 4930597L12 gene
Tssr36229 3 153474643 to 153474655 12 - TSS region transcription start site region 36229
Cpgi13960 3 153475481 to 153475828 347 CpG island CpG island 13960
Gm46831 3 153500110 to 153508546 8436 - lncRNA gene predicted gene, 46831
D3Mit294 3 153500421 to 153500542 121 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 294
D3Mit114a 3 153529518 to 153529616 98 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 114a
D3Mit114b 3 153529518 to 153529794 276 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 114b
D3Mit302 3 153583986 to 153584104 118 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 302
D3Dcr23 3 153583996 to 153584100 104 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 23
Gm32721 3 153585586 to 153591128 5542 + lncRNA gene predicted gene, 32721
Gm22136 3 153621702 to 153621969 267 + unclassified non-coding RNA gene predicted gene, 22136
Tssr36230 3 153624736 to 153624756 20 - TSS region transcription start site region 36230
Tssr32432 3 153630924 to 153630929 5 + TSS region transcription start site region 32432
Tssr36231 3 153631121 to 153631125 4 - TSS region transcription start site region 36231
Tssr36232 3 153633465 to 153633483 18 - TSS region transcription start site region 36232
Tssr36233 3 153633517 to 153633528 11 - TSS region transcription start site region 36233
Tssr36234 3 153650126 to 153650143 17 - TSS region transcription start site region 36234
Tssr36235 3 153650235 to 153650252 17 - TSS region transcription start site region 36235
Tssr36236 3 153650254 to 153650268 14 - TSS region transcription start site region 36236
Tssr32433 3 153675360 to 153675371 11 + TSS region transcription start site region 32433
Tssr32434 3 153675393 to 153675396 3 + TSS region transcription start site region 32434
Gm5858 3 153691408 to 153694821 3413 - pseudogene predicted gene 5858
Tssr36237 3 153705691 to 153705703 12 - TSS region transcription start site region 36237
Tssr36238 3 153705802 to 153705819 17 - TSS region transcription start site region 36238
Gm22206 3 153708911 to 153709026 115 + snoRNA gene predicted gene, 22206
Tssr36239 3 153721044 to 153721057 13 - TSS region transcription start site region 36239
Tssr32435 3 153723905 to 153723913 8 + TSS region transcription start site region 32435
Cpgi13961 3 153724605 to 153725498 893 CpG island CpG island 13961
Tssr36240 3 153725104 to 153725179 75 - TSS region transcription start site region 36240
Tssr36241 3 153733909 to 153733929 20 - TSS region transcription start site region 36241
Gm43833 3 153749299 to 153749591 292 + pseudogene predicted gene 43833
Gm10042 3 153785053 to 153785134 81 + pseudogene predicted gene 10042
5730460C07Rik 3 153789305 to 153792087 2782 - lincRNA gene RIKEN cDNA 5730460C07 gene
Gm25757 3 153831170 to 153831292 122 + snoRNA gene predicted gene, 25757
Tssr32436 3 153844217 to 153844225 8 + TSS region transcription start site region 32436
Tssr32437 3 153844235 to 153844270 35 + TSS region transcription start site region 32437
Asb17 3 153844247 to 153853615 9368 + protein coding gene ankyrin repeat and SOCS box-containing 17
Tssr32438 3 153849865 to 153849893 28 + TSS region transcription start site region 32438
Asb17os 3 153850374 to 153852424 2050 - antisense lncRNA gene ankyrin repeat and SOCS box-containing 17, opposite strand
Tssr36242 3 153852390 to 153852412 22 - TSS region transcription start site region 36242
Tssr36243 3 153852414 to 153852428 14 - TSS region transcription start site region 36243
Tssr36244 3 153852430 to 153852447 17 - TSS region transcription start site region 36244
Tssr36245 3 153852483 to 153852485 2 - TSS region transcription start site region 36245
Msh4 3 153857149 to 153906138 48989 - protein coding gene mutS homolog 4
Gm24395 3 153864807 to 153864931 124 + snoRNA gene predicted gene, 24395
Tssr36246 3 153866614 to 153866619 5 - TSS region transcription start site region 36246
Cpgi13962 3 153905412 to 153906088 676 CpG island CpG island 13962
Tssr36247 3 153905855 to 153905862 7 - TSS region transcription start site region 36247
Rabggtb 3 153907289 to 153912966 5677 - protein coding gene Rab geranylgeranyl transferase, b subunit
Snord45b 3 153910567 to 153910611 44 - snoRNA gene small nucleolar RNA, C/D box 45B
Gm24494 3 153911610 to 153911690 80 - snoRNA gene predicted gene, 24494
Snord45c 3 153912129 to 153912189 60 - snoRNA gene small nucleolar RNA, C/D box 45C
Tssr36248 3 153912199 to 153912208 9 - TSS region transcription start site region 36248
Cpgi13963 3 153912582 to 153913310 728 CpG island CpG island 13963
Tssr36249 3 153912941 to 153912960 19 - TSS region transcription start site region 36249
Tssr36250 3 153912966 to 153912990 24 - TSS region transcription start site region 36250
Gm43400 3 153913095 to 153916858 3763 + antisense lncRNA gene predicted gene 43400
Acadm 3 153922357 to 153944632 22275 - protein coding gene acyl-Coenzyme A dehydrogenase, medium chain
Tssr36251 3 153929630 to 153929639 9 - TSS region transcription start site region 36251
D3Mit88 3 153940942 to 153941108 166 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 88
Cpgi13964 3 153943980 to 153944985 1005 CpG island CpG island 13964
Tssr36252 3 153944425 to 153944452 27 - TSS region transcription start site region 36252
Tssr36253 3 153944461 to 153944514 53 - TSS region transcription start site region 36253
Tssr36254 3 153944632 to 153944681 49 - TSS region transcription start site region 36254
Tssr32439 3 153944851 to 153944866 15 + TSS region transcription start site region 32439
Tssr32440 3 153958397 to 153958405 8 + TSS region transcription start site region 32440
Tssr36255 3 153964620 to 153964624 4 - TSS region transcription start site region 36255
Cpgi13965 3 153973023 to 153974010 987 CpG island CpG island 13965
Slc44a5 3 153973436 to 154271722 298286 + protein coding gene solute carrier family 44, member 5
Tssr32441 3 153973491 to 153973520 29 + TSS region transcription start site region 32441
Tssr32442 3 153973625 to 153973690 65 + TSS region transcription start site region 32442
D3Mit220 3 153997864 to 153998000 136 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 220
Tssr32443 3 154021339 to 154021346 7 + TSS region transcription start site region 32443
Gm40185 3 154080377 to 154086365 5988 - lncRNA gene predicted gene, 40185
Tssr36256 3 154091785 to 154091789 4 - TSS region transcription start site region 36256
Tssr36257 3 154094069 to 154094080 11 - TSS region transcription start site region 36257
Tssr36258 3 154094090 to 154094100 10 - TSS region transcription start site region 36258
Tssr36259 3 154094131 to 154094142 11 - TSS region transcription start site region 36259
Tssr36260 3 154094153 to 154094160 7 - TSS region transcription start site region 36260
Tssr32444 3 154132320 to 154132328 8 + TSS region transcription start site region 32444
Gm3076 3 154132340 to 154132790 450 + pseudogene predicted gene 3076
D3Mit58 3 154136716 to 154136860 144 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 58
Gm42541 3 154139097 to 154141345 2248 + unclassified gene predicted gene 42541
Gm32399 3 154185370 to 154197217 11847 - lncRNA gene predicted gene, 32399
Tssr32445 3 154193014 to 154193043 29 + TSS region transcription start site region 32445
Gm40184 3 154203720 to 154205047 1327 - lncRNA gene predicted gene, 40184
D3Mit59 3 154225961 to 154226165 204 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 59
Gm42540 3 154247493 to 154249500 2007 - unclassified gene predicted gene 42540
Cpgi13966 3 154269782 to 154269957 175 CpG island CpG island 13966
Lhx8 3 154306288 to 154330560 24272 - protein coding gene LIM homeobox protein 8
Tssr32446 3 154314090 to 154314094 4 + TSS region transcription start site region 32446
Cpgi13967 3 154327916 to 154328832 916 CpG island CpG island 13967
Tssr36261 3 154328643 to 154328663 20 - TSS region transcription start site region 36261
Cpgi13968 3 154329287 to 154330502 1215 CpG island CpG island 13968
Tssr36262 3 154330331 to 154330334 3 - TSS region transcription start site region 36262
Tssr36263 3 154330543 to 154330576 33 - TSS region transcription start site region 36263
AI606473 3 154330821 to 154334254 3433 + lncRNA gene expressed sequence AI606473
Cpgi13969 3 154332025 to 154332583 558 CpG island CpG island 13969
Gm2988 3 154523473 to 154524268 795 + pseudogene predicted gene 2988
D3Mit116 3 154541602 to 154541860 258 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 116
Gm40186 3 154558146 to 154567117 8971 - lncRNA gene predicted gene, 40186
Tyw3 3 154576520 to 154597112 20592 - protein coding gene tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)
D3Mit263 3 154589495 to 154589639 144 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 263
Tssr36264 3 154594193 to 154594198 5 - TSS region transcription start site region 36264
Tssr36265 3 154594265 to 154594277 12 - TSS region transcription start site region 36265
Cpgi13970 3 154596506 to 154597319 813 CpG island CpG island 13970
Tssr32447 3 154596674 to 154596688 14 + TSS region transcription start site region 32447
Cryz 3 154596711 to 154623182 26471 + protein coding gene crystallin, zeta
Tssr36266 3 154597045 to 154597088 43 - TSS region transcription start site region 36266
Tssr32448 3 154597143 to 154597156 13 + TSS region transcription start site region 32448
Tssr32449 3 154597159 to 154597172 13 + TSS region transcription start site region 32449
Tssr32450 3 154597199 to 154597202 3 + TSS region transcription start site region 32450
Tssr32451 3 154597204 to 154597215 11 + TSS region transcription start site region 32451
Tssr32452 3 154597219 to 154597244 25 + TSS region transcription start site region 32452
Tssr32453 3 154597352 to 154597363 11 + TSS region transcription start site region 32453
Tssr32454 3 154620884 to 154620890 6 + TSS region transcription start site region 32454
Tssr36267 3 154632394 to 154632407 13 - TSS region transcription start site region 36267
Cpgi13971 3 154647162 to 154647394 232 CpG island CpG island 13971
Gm38139 3 154656701 to 154680269 23568 + sense overlapping lncRNA gene predicted gene, 38139
Tssr1101 3 154664003 to 154664026 23 + TSS region transcription start site region 1101
Cpgi13972 3 154664073 to 154664383 310 CpG island CpG island 13972
Tssr32455 3 154664161 to 154664212 51 + TSS region transcription start site region 32455
D3Mit162 3 154674245 to 154674394 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 162
Tssr32456 3 154707619 to 154707627 8 + TSS region transcription start site region 32456
Tssr32457 3 154707630 to 154707654 24 + TSS region transcription start site region 32457
Gm20389 3 154708658 to 154711343 2685 - antisense lncRNA gene predicted gene 20389
Tssr36268 3 154711034 to 154711043 9 - TSS region transcription start site region 36268
Tssr36269 3 154711048 to 154711069 21 - TSS region transcription start site region 36269
Tssr32458 3 154711085 to 154711096 11 + TSS region transcription start site region 32458
Tssr32459 3 154711097 to 154711107 10 + TSS region transcription start site region 32459
Tssr32460 3 154711108 to 154711121 13 + TSS region transcription start site region 32460
Tssr32461 3 154711125 to 154711133 8 + TSS region transcription start site region 32461
Erich3 3 154711133 to 154749012 37879 + protein coding gene glutamate rich 3
Tssr32462 3 154711139 to 154711144 5 + TSS region transcription start site region 32462
Tssr32463 3 154711151 to 154711162 11 + TSS region transcription start site region 32463
Tssr36270 3 154711321 to 154711329 8 - TSS region transcription start site region 36270
Tssr36271 3 154711333 to 154711350 17 - TSS region transcription start site region 36271
Tssr32464 3 154711390 to 154711402 12 + TSS region transcription start site region 32464
Tssr1102 3 154711410 to 154711416 6 + TSS region transcription start site region 1102
Tssr1103 3 154711423 to 154711428 5 + TSS region transcription start site region 1103
Tssr32465 3 154718077 to 154718091 14 + TSS region transcription start site region 32465
Tssr32466 3 154718092 to 154718110 18 + TSS region transcription start site region 32466
Tnni3k 3 154786291 to 155055407 269116 - protein coding gene TNNI3 interacting kinase
Tssr32467 3 154796220 to 154796231 11 + TSS region transcription start site region 32467
Tssr32468 3 154796267 to 154796276 9 + TSS region transcription start site region 32468
Tssr32469 3 154796282 to 154796289 7 + TSS region transcription start site region 32469
Tssr36272 3 154821769 to 154821773 4 - TSS region transcription start site region 36272