Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:152837509-154090133

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hrtfm8 3 148745409 to 152886674 4141265 QTL heart failure modifier 8
Pigk 3 152714085 to 152842926 128841 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class K
St6galnac5 3 152820709 to 152982207 161498 - protein coding gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
Tssr36219 3 152845810 to 152845819 9 - TSS region transcription start site region 36219
Cpgi13956 3 152864065 to 152864699 634 CpG island CpG island 13956
Gm16232 3 152876051 to 152876217 166 - pseudogene predicted gene 16232
Tssr32421 3 152884220 to 152884293 73 + TSS region transcription start site region 32421
Tssr32422 3 152884346 to 152884366 20 + TSS region transcription start site region 32422
D3Mit322 3 152886552 to 152886674 122 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 322
Gm46830 3 152906361 to 152920809 14448 + lncRNA gene predicted gene, 46830
Tssr32423 3 152908342 to 152908350 8 + TSS region transcription start site region 32423
Tssr32424 3 152912345 to 152912403 58 + TSS region transcription start site region 32424
Tssr32425 3 152912720 to 152912734 14 + TSS region transcription start site region 32425
Gm16213 3 152920240 to 152921399 1159 + antisense lncRNA gene predicted gene 16213
Tssr32426 3 152921152 to 152921155 3 + TSS region transcription start site region 32426
Tssr32427 3 152928889 to 152928900 11 + TSS region transcription start site region 32427
Tssr32428 3 152930044 to 152930048 4 + TSS region transcription start site region 32428
Gm16231 3 152943313 to 152943944 631 + antisense lncRNA gene predicted gene 16231
2900086E13Rik 3 152965432 to 152966416 984 unclassified gene RIKEN cDNA 2900086E13 gene
Gm42710 3 152965433 to 152966417 984 + unclassified gene predicted gene 42710
Tssr36220 3 152973352 to 152973364 12 - TSS region transcription start site region 36220
Tssr36221 3 152973628 to 152973640 12 - TSS region transcription start site region 36221
Tssr32429 3 152979753 to 152979778 25 + TSS region transcription start site region 32429
Cpgi13957 3 152980900 to 152981747 847 CpG island CpG island 13957
Cpgi13958 3 152982036 to 152982290 254 CpG island CpG island 13958
Tssr36222 3 152982187 to 152982216 29 - TSS region transcription start site region 36222
Tssr36223 3 152982240 to 152982251 11 - TSS region transcription start site region 36223
Gm40182 3 153068902 to 153075214 6312 + lncRNA gene predicted gene, 40182
Tssr32430 3 153078274 to 153078291 17 + TSS region transcription start site region 32430
Cpgi13959 3 153120095 to 153120516 421 CpG island CpG island 13959
4930482G09Rik 3 153147943 to 153152108 4165 - lncRNA gene RIKEN cDNA 4930482G09 gene
Tssr36224 3 153152075 to 153152086 11 - TSS region transcription start site region 36224
1700094M23Rik 3 153162728 to 153182815 20087 - lincRNA gene RIKEN cDNA 1700094M23 gene
St6galnac3 3 153202509 to 153725133 522624 - protein coding gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
D3Mit87 3 153213318 to 153213448 130 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 87
Gm33066 3 153220042 to 153228505 8463 + lncRNA gene predicted gene, 33066
Tssr36225 3 153225753 to 153225763 10 - TSS region transcription start site region 36225
Tssr32431 3 153260799 to 153260841 42 + TSS region transcription start site region 32431
Tssr36226 3 153263739 to 153263742 3 - TSS region transcription start site region 36226
1700012D16Rik 3 153296504 to 153298649 2145 - sense intronic lncRNA gene RIKEN cDNA 1700012D16 gene
Tssr36227 3 153298646 to 153298683 37 - TSS region transcription start site region 36227
A530083M17Rik 3 153309370 to 153312745 3375 - unclassified gene RIKEN cDNA A530083M17 gene
Gm27405 3 153313713 to 153313824 111 + miRNA gene predicted gene, 27405
Tssr36228 3 153322812 to 153322833 21 - TSS region transcription start site region 36228
D3Ertd258e 3 153360390 to 153360605 215 DNA segment DNA segment, Chr 3, ERATO Doi 258, expressed
1700015C17Rik 3 153467216 to 153478210 10994 - sense intronic lncRNA gene RIKEN cDNA 1700015C17 gene
4930597L12Rik 3 153473744 to 153474654 910 - unclassified non-coding RNA gene RIKEN cDNA 4930597L12 gene
Tssr36229 3 153474643 to 153474655 12 - TSS region transcription start site region 36229
Cpgi13960 3 153475481 to 153475828 347 CpG island CpG island 13960
Gm46831 3 153500110 to 153508546 8436 - lncRNA gene predicted gene, 46831
D3Mit294 3 153500421 to 153500542 121 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 294
D3Mit114b 3 153529518 to 153529794 276 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 114b
D3Mit114a 3 153529518 to 153529616 98 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 114a
D3Mit302 3 153583986 to 153584104 118 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 302
D3Dcr23 3 153583996 to 153584100 104 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 23
Gm32721 3 153585586 to 153591128 5542 + lncRNA gene predicted gene, 32721
Gm22136 3 153621702 to 153621969 267 + unclassified non-coding RNA gene predicted gene, 22136
Tssr36230 3 153624736 to 153624756 20 - TSS region transcription start site region 36230
Tssr32432 3 153630924 to 153630929 5 + TSS region transcription start site region 32432
Tssr36231 3 153631121 to 153631125 4 - TSS region transcription start site region 36231
Tssr36232 3 153633465 to 153633483 18 - TSS region transcription start site region 36232
Tssr36233 3 153633517 to 153633528 11 - TSS region transcription start site region 36233
Tssr36234 3 153650126 to 153650143 17 - TSS region transcription start site region 36234
Tssr36235 3 153650235 to 153650252 17 - TSS region transcription start site region 36235
Tssr36236 3 153650254 to 153650268 14 - TSS region transcription start site region 36236
Tssr32433 3 153675360 to 153675371 11 + TSS region transcription start site region 32433
Tssr32434 3 153675393 to 153675396 3 + TSS region transcription start site region 32434
Gm5858 3 153691408 to 153694821 3413 - pseudogene predicted gene 5858
Tssr36237 3 153705691 to 153705703 12 - TSS region transcription start site region 36237
Tssr36238 3 153705802 to 153705819 17 - TSS region transcription start site region 36238
Gm22206 3 153708911 to 153709026 115 + snoRNA gene predicted gene, 22206
Tssr36239 3 153721044 to 153721057 13 - TSS region transcription start site region 36239
Tssr32435 3 153723905 to 153723913 8 + TSS region transcription start site region 32435
Cpgi13961 3 153724605 to 153725498 893 CpG island CpG island 13961
Tssr36240 3 153725104 to 153725179 75 - TSS region transcription start site region 36240
Tssr36241 3 153733909 to 153733929 20 - TSS region transcription start site region 36241
Gm43833 3 153749299 to 153749591 292 + pseudogene predicted gene 43833
Gm10042 3 153785053 to 153785134 81 + pseudogene predicted gene 10042
5730460C07Rik 3 153789305 to 153792087 2782 - lincRNA gene RIKEN cDNA 5730460C07 gene
Gm25757 3 153831170 to 153831292 122 + snoRNA gene predicted gene, 25757
Tssr32436 3 153844217 to 153844225 8 + TSS region transcription start site region 32436
Tssr32437 3 153844235 to 153844270 35 + TSS region transcription start site region 32437
Asb17 3 153844247 to 153853615 9368 + protein coding gene ankyrin repeat and SOCS box-containing 17
Tssr32438 3 153849865 to 153849893 28 + TSS region transcription start site region 32438
Asb17os 3 153850374 to 153852424 2050 - antisense lncRNA gene ankyrin repeat and SOCS box-containing 17, opposite strand
Tssr36242 3 153852390 to 153852412 22 - TSS region transcription start site region 36242
Tssr36243 3 153852414 to 153852428 14 - TSS region transcription start site region 36243
Tssr36244 3 153852430 to 153852447 17 - TSS region transcription start site region 36244
Tssr36245 3 153852483 to 153852485 2 - TSS region transcription start site region 36245
Msh4 3 153857149 to 153906138 48989 - protein coding gene mutS homolog 4
Gm24395 3 153864807 to 153864931 124 + snoRNA gene predicted gene, 24395
Tssr36246 3 153866614 to 153866619 5 - TSS region transcription start site region 36246
Cpgi13962 3 153905412 to 153906088 676 CpG island CpG island 13962
Tssr36247 3 153905855 to 153905862 7 - TSS region transcription start site region 36247
Rabggtb 3 153907289 to 153912966 5677 - protein coding gene Rab geranylgeranyl transferase, b subunit
Snord45b 3 153910567 to 153910611 44 - snoRNA gene small nucleolar RNA, C/D box 45B
Gm24494 3 153911610 to 153911690 80 - snoRNA gene predicted gene, 24494
Snord45c 3 153912129 to 153912189 60 - snoRNA gene small nucleolar RNA, C/D box 45C
Tssr36248 3 153912199 to 153912208 9 - TSS region transcription start site region 36248
Cpgi13963 3 153912582 to 153913310 728 CpG island CpG island 13963
Tssr36249 3 153912941 to 153912960 19 - TSS region transcription start site region 36249
Tssr36250 3 153912966 to 153912990 24 - TSS region transcription start site region 36250
Gm43400 3 153913095 to 153916858 3763 + antisense lncRNA gene predicted gene 43400
Acadm 3 153922357 to 153944632 22275 - protein coding gene acyl-Coenzyme A dehydrogenase, medium chain
Tssr36251 3 153929630 to 153929639 9 - TSS region transcription start site region 36251
D3Mit88 3 153940942 to 153941108 166 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 88
Cpgi13964 3 153943980 to 153944985 1005 CpG island CpG island 13964
Tssr36252 3 153944425 to 153944452 27 - TSS region transcription start site region 36252
Tssr36253 3 153944461 to 153944514 53 - TSS region transcription start site region 36253
Tssr36254 3 153944632 to 153944681 49 - TSS region transcription start site region 36254
Tssr32439 3 153944851 to 153944866 15 + TSS region transcription start site region 32439
Tssr32440 3 153958397 to 153958405 8 + TSS region transcription start site region 32440
Tssr36255 3 153964620 to 153964624 4 - TSS region transcription start site region 36255
Cpgi13965 3 153973023 to 153974010 987 CpG island CpG island 13965
Slc44a5 3 153973436 to 154271722 298286 + protein coding gene solute carrier family 44, member 5
Tssr32441 3 153973491 to 153973520 29 + TSS region transcription start site region 32441
Tssr32442 3 153973625 to 153973690 65 + TSS region transcription start site region 32442
D3Mit220 3 153997864 to 153998000 136 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 220
Tssr32443 3 154021339 to 154021346 7 + TSS region transcription start site region 32443
Gm40185 3 154080377 to 154086365 5988 - lncRNA gene predicted gene, 40185