Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:152458889-153398900

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hrtfm8 3 148745409 to 152886674 4141265 QTL heart failure modifier 8
Zzz3 3 152395473 to 152462826 67353 + protein coding gene zinc finger, ZZ domain containing 3
Ak5 3 152462815 to 152668360 205545 - protein coding gene adenylate kinase 5
Tssr32416 3 152477918 to 152477941 23 + TSS region transcription start site region 32416
Cpgi13951 3 152478015 to 152478347 332 CpG island CpG island 13951
3110067G11Rik 3 152483527 to 152487908 4381 - protein coding gene RIKEN cDNA 3110067G11 gene
AI115009 3 152666913 to 152681432 14519 + antisense lncRNA gene expressed sequence AI115009
Cpgi13952 3 152667069 to 152668514 1445 CpG island CpG island 13952
Tssr36216 3 152667964 to 152667976 12 - TSS region transcription start site region 36216
Tssr36217 3 152668033 to 152668102 69 - TSS region transcription start site region 36217
Tssr36218 3 152668135 to 152668147 12 - TSS region transcription start site region 36218
Cpgi13953 3 152690278 to 152690431 153 CpG island CpG island 13953
Gm32085 3 152697823 to 152709908 12085 + lncRNA gene predicted gene, 32085
Tssr32417 3 152702665 to 152702706 41 + TSS region transcription start site region 32417
Cpgi13954 3 152713909 to 152714721 812 CpG island CpG island 13954
Pigk 3 152714085 to 152842926 128841 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class K
Tssr32418 3 152714094 to 152714137 43 + TSS region transcription start site region 32418
D3Dcr22 3 152731073 to 152731183 110 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 22
D3Mit323 3 152740311 to 152740430 119 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 323
D3Mit323.1 3 152740454 to 152740570 116 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 323.1
Gm40181 3 152752450 to 152756090 3640 - lncRNA gene predicted gene, 40181
Tssr32419 3 152763373 to 152763415 42 + TSS region transcription start site region 32419
Cpgi13955 3 152763567 to 152763771 204 CpG island CpG island 13955
Rpl29-ps1 3 152780774 to 152782061 1287 - pseudogene ribosomal protein L29, pseudogene 1
Tssr32420 3 152785438 to 152785457 19 + TSS region transcription start site region 32420
St6galnac5 3 152820709 to 152982207 161498 - protein coding gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
Tssr36219 3 152845810 to 152845819 9 - TSS region transcription start site region 36219
Cpgi13956 3 152864065 to 152864699 634 CpG island CpG island 13956
Gm16232 3 152876051 to 152876217 166 - pseudogene predicted gene 16232
Tssr32421 3 152884220 to 152884293 73 + TSS region transcription start site region 32421
Tssr32422 3 152884346 to 152884366 20 + TSS region transcription start site region 32422
D3Mit322 3 152886552 to 152886674 122 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 322
Gm46830 3 152906361 to 152920809 14448 + lncRNA gene predicted gene, 46830
Tssr32423 3 152908342 to 152908350 8 + TSS region transcription start site region 32423
Tssr32424 3 152912345 to 152912403 58 + TSS region transcription start site region 32424
Tssr32425 3 152912720 to 152912734 14 + TSS region transcription start site region 32425
Gm16213 3 152920240 to 152921399 1159 + antisense lncRNA gene predicted gene 16213
Tssr32426 3 152921152 to 152921155 3 + TSS region transcription start site region 32426
Tssr32427 3 152928889 to 152928900 11 + TSS region transcription start site region 32427
Tssr32428 3 152930044 to 152930048 4 + TSS region transcription start site region 32428
Gm16231 3 152943313 to 152943944 631 + antisense lncRNA gene predicted gene 16231
2900086E13Rik 3 152965432 to 152966416 984 unclassified gene RIKEN cDNA 2900086E13 gene
Gm42710 3 152965433 to 152966417 984 + unclassified gene predicted gene 42710
Tssr36220 3 152973352 to 152973364 12 - TSS region transcription start site region 36220
Tssr36221 3 152973628 to 152973640 12 - TSS region transcription start site region 36221
Tssr32429 3 152979753 to 152979778 25 + TSS region transcription start site region 32429
Cpgi13957 3 152980900 to 152981747 847 CpG island CpG island 13957
Cpgi13958 3 152982036 to 152982290 254 CpG island CpG island 13958
Tssr36222 3 152982187 to 152982216 29 - TSS region transcription start site region 36222
Tssr36223 3 152982240 to 152982251 11 - TSS region transcription start site region 36223
Gm40182 3 153068902 to 153075214 6312 + lncRNA gene predicted gene, 40182
Tssr32430 3 153078274 to 153078291 17 + TSS region transcription start site region 32430
Cpgi13959 3 153120095 to 153120516 421 CpG island CpG island 13959
4930482G09Rik 3 153147943 to 153152108 4165 - lncRNA gene RIKEN cDNA 4930482G09 gene
Tssr36224 3 153152075 to 153152086 11 - TSS region transcription start site region 36224
1700094M23Rik 3 153162728 to 153182815 20087 - lincRNA gene RIKEN cDNA 1700094M23 gene
St6galnac3 3 153202509 to 153725133 522624 - protein coding gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
D3Mit87 3 153213318 to 153213448 130 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 87
Gm33066 3 153220042 to 153228505 8463 + lncRNA gene predicted gene, 33066
Tssr36225 3 153225753 to 153225763 10 - TSS region transcription start site region 36225
Tssr32431 3 153260799 to 153260841 42 + TSS region transcription start site region 32431
Tssr36226 3 153263739 to 153263742 3 - TSS region transcription start site region 36226
1700012D16Rik 3 153296504 to 153298649 2145 - sense intronic lncRNA gene RIKEN cDNA 1700012D16 gene
Tssr36227 3 153298646 to 153298683 37 - TSS region transcription start site region 36227
A530083M17Rik 3 153309370 to 153312745 3375 - unclassified gene RIKEN cDNA A530083M17 gene
Gm27405 3 153313713 to 153313824 111 + miRNA gene predicted gene, 27405
Tssr36228 3 153322812 to 153322833 21 - TSS region transcription start site region 36228
D3Ertd258e 3 153360390 to 153360605 215 DNA segment DNA segment, Chr 3, ERATO Doi 258, expressed