Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:152257815-152873360

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nexn 3 152236982 to 152266350 29368 - protein coding gene nexilin
Tssr36205 3 152264958 to 152264989 31 - TSS region transcription start site region 36205
Tssr36206 3 152264995 to 152265026 31 - TSS region transcription start site region 36206
Tssr36207 3 152265039 to 152265054 15 - TSS region transcription start site region 36207
Cpgi13946 3 152265326 to 152266216 890 CpG island CpG island 13946
Tssr36208 3 152265737 to 152265744 7 - TSS region transcription start site region 36208
Tssr36209 3 152265758 to 152265782 24 - TSS region transcription start site region 36209
Tssr36210 3 152265822 to 152265850 28 - TSS region transcription start site region 36210
Tssr36211 3 152265861 to 152265878 17 - TSS region transcription start site region 36211
Tssr36212 3 152265883 to 152265901 18 - TSS region transcription start site region 36212
Tssr36213 3 152266122 to 152266152 30 - TSS region transcription start site region 36213
Tssr36214 3 152266154 to 152266167 13 - TSS region transcription start site region 36214
Gm31999 3 152266520 to 152267038 518 + lncRNA gene predicted gene, 31999
Miga1 3 152273849 to 152340407 66558 - protein coding gene mitoguardin 1
Tssr32405 3 152290326 to 152290331 5 + TSS region transcription start site region 32405
Cpgi13947 3 152339761 to 152340655 894 CpG island CpG island 13947
Tssr36215 3 152340350 to 152340416 66 - TSS region transcription start site region 36215
Cpgi13948 3 152346150 to 152347117 967 CpG island CpG island 13948
Tssr32406 3 152346465 to 152346531 66 + TSS region transcription start site region 32406
Usp33 3 152346478 to 152393617 47139 + protein coding gene ubiquitin specific peptidase 33
Tssr32407 3 152348570 to 152348574 4 + TSS region transcription start site region 32407
Tssr32408 3 152350004 to 152350012 8 + TSS region transcription start site region 32408
Gm42967 3 152380857 to 152383168 2311 - unclassified gene predicted gene 42967
Gm43859 3 152383806 to 152385217 1411 - unclassified gene predicted gene 43859
Tssr32409 3 152385072 to 152385080 8 + TSS region transcription start site region 32409
Gm43858 3 152386260 to 152388037 1777 + unclassified gene predicted gene 43858
Gm43857 3 152391162 to 152394240 3078 - unclassified gene predicted gene 43857
Cpgi13949 3 152394567 to 152394762 195 CpG island CpG island 13949
Cpgi13950 3 152395295 to 152397273 1978 CpG island CpG island 13950
Tssr32410 3 152395444 to 152395489 45 + TSS region transcription start site region 32410
Zzz3 3 152395473 to 152462826 67353 + protein coding gene zinc finger, ZZ domain containing 3
Tssr32411 3 152395991 to 152396059 68 + TSS region transcription start site region 32411
Tssr32412 3 152396061 to 152396082 21 + TSS region transcription start site region 32412
Tssr32413 3 152396362 to 152396394 32 + TSS region transcription start site region 32413
Tssr32414 3 152396664 to 152396702 38 + TSS region transcription start site region 32414
Tssr32415 3 152415777 to 152415781 4 + TSS region transcription start site region 32415
D3Dcr21 3 152416809 to 152416917 108 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 21
Ak5 3 152462815 to 152668360 205545 - protein coding gene adenylate kinase 5
Tssr32416 3 152477918 to 152477941 23 + TSS region transcription start site region 32416
Cpgi13951 3 152478015 to 152478347 332 CpG island CpG island 13951
3110067G11Rik 3 152483527 to 152487908 4381 - protein coding gene RIKEN cDNA 3110067G11 gene
AI115009 3 152666913 to 152681432 14519 + antisense lncRNA gene expressed sequence AI115009
Cpgi13952 3 152667069 to 152668514 1445 CpG island CpG island 13952
Tssr36216 3 152667964 to 152667976 12 - TSS region transcription start site region 36216
Tssr36217 3 152668033 to 152668102 69 - TSS region transcription start site region 36217
Tssr36218 3 152668135 to 152668147 12 - TSS region transcription start site region 36218
Cpgi13953 3 152690278 to 152690431 153 CpG island CpG island 13953
Gm32085 3 152697823 to 152709908 12085 + lncRNA gene predicted gene, 32085
Tssr32417 3 152702665 to 152702706 41 + TSS region transcription start site region 32417
Cpgi13954 3 152713909 to 152714721 812 CpG island CpG island 13954
Pigk 3 152714085 to 152842926 128841 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class K
Tssr32418 3 152714094 to 152714137 43 + TSS region transcription start site region 32418
D3Dcr22 3 152731073 to 152731183 110 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 22
D3Mit323 3 152740311 to 152740430 119 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 323
D3Mit323.1 3 152740454 to 152740570 116 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 323.1
Gm40181 3 152752450 to 152756090 3640 - lncRNA gene predicted gene, 40181
Tssr32419 3 152763373 to 152763415 42 + TSS region transcription start site region 32419
Cpgi13955 3 152763567 to 152763771 204 CpG island CpG island 13955
Rpl29-ps1 3 152780774 to 152782061 1287 - pseudogene ribosomal protein L29, pseudogene 1
Tssr32420 3 152785438 to 152785457 19 + TSS region transcription start site region 32420
St6galnac5 3 152820709 to 152982207 161498 - protein coding gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
Tssr36219 3 152845810 to 152845819 9 - TSS region transcription start site region 36219
Cpgi13956 3 152864065 to 152864699 634 CpG island CpG island 13956