Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:152240433-153691417

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164 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hrtfm8 3 148745409 to 152886674 4141265 QTL heart failure modifier 8
Nexn 3 152236982 to 152266350 29368 - protein coding gene nexilin
Tssr36171 3 152241048 to 152241050 2 - TSS region transcription start site region 36171
Tssr36172 3 152242805 to 152242819 14 - TSS region transcription start site region 36172
Tssr36173 3 152243852 to 152243861 9 - TSS region transcription start site region 36173
Tssr36174 3 152243876 to 152243898 22 - TSS region transcription start site region 36174
Tssr36175 3 152243975 to 152243987 12 - TSS region transcription start site region 36175
Tssr36176 3 152243991 to 152244004 13 - TSS region transcription start site region 36176
Tssr36177 3 152244007 to 152244033 26 - TSS region transcription start site region 36177
Tssr36178 3 152244071 to 152244078 7 - TSS region transcription start site region 36178
Tssr36179 3 152247108 to 152247152 44 - TSS region transcription start site region 36179
Tssr36180 3 152247186 to 152247197 11 - TSS region transcription start site region 36180
Tssr36181 3 152247210 to 152247219 9 - TSS region transcription start site region 36181
Tssr36182 3 152247225 to 152247236 11 - TSS region transcription start site region 36182
Tssr36183 3 152247253 to 152247266 13 - TSS region transcription start site region 36183
Tssr36184 3 152247956 to 152247970 14 - TSS region transcription start site region 36184
Tssr36185 3 152247972 to 152248001 29 - TSS region transcription start site region 36185
Tssr36186 3 152248080 to 152248091 11 - TSS region transcription start site region 36186
Tssr36187 3 152248257 to 152248274 17 - TSS region transcription start site region 36187
Tssr36188 3 152248325 to 152248343 18 - TSS region transcription start site region 36188
Tssr36189 3 152248351 to 152248374 23 - TSS region transcription start site region 36189
Tssr36190 3 152248429 to 152248435 6 - TSS region transcription start site region 36190
Tssr36191 3 152249678 to 152249724 46 - TSS region transcription start site region 36191
Gm43185 3 152250029 to 152252803 2774 - unclassified gene predicted gene 43185
Tssr36192 3 152250159 to 152250173 14 - TSS region transcription start site region 36192
Tssr36193 3 152252828 to 152252849 21 - TSS region transcription start site region 36193
Tssr1100 3 152252870 to 152252913 43 + TSS region transcription start site region 1100
Tssr36194 3 152252918 to 152252963 45 - TSS region transcription start site region 36194
Tssr36195 3 152253070 to 152253076 6 - TSS region transcription start site region 36195
Tssr36196 3 152253084 to 152253103 19 - TSS region transcription start site region 36196
Tssr36197 3 152253121 to 152253134 13 - TSS region transcription start site region 36197
Tssr32404 3 152253608 to 152253641 33 + TSS region transcription start site region 32404
Tssr36198 3 152253680 to 152253690 10 - TSS region transcription start site region 36198
Tssr36199 3 152253695 to 152253714 19 - TSS region transcription start site region 36199
Tssr36200 3 152253719 to 152253750 31 - TSS region transcription start site region 36200
Tssr36201 3 152253755 to 152253766 11 - TSS region transcription start site region 36201
Tssr36202 3 152253801 to 152253812 11 - TSS region transcription start site region 36202
Tssr36203 3 152255333 to 152255354 21 - TSS region transcription start site region 36203
Tssr36204 3 152255355 to 152255373 18 - TSS region transcription start site region 36204
Tssr36205 3 152264958 to 152264989 31 - TSS region transcription start site region 36205
Tssr36206 3 152264995 to 152265026 31 - TSS region transcription start site region 36206
Tssr36207 3 152265039 to 152265054 15 - TSS region transcription start site region 36207
Cpgi13946 3 152265326 to 152266216 890 CpG island CpG island 13946
Tssr36208 3 152265737 to 152265744 7 - TSS region transcription start site region 36208
Tssr36209 3 152265758 to 152265782 24 - TSS region transcription start site region 36209
Tssr36210 3 152265822 to 152265850 28 - TSS region transcription start site region 36210
Tssr36211 3 152265861 to 152265878 17 - TSS region transcription start site region 36211
Tssr36212 3 152265883 to 152265901 18 - TSS region transcription start site region 36212
Tssr36213 3 152266122 to 152266152 30 - TSS region transcription start site region 36213
Tssr36214 3 152266154 to 152266167 13 - TSS region transcription start site region 36214
Gm31999 3 152266520 to 152267038 518 + lncRNA gene predicted gene, 31999
Miga1 3 152273849 to 152340407 66558 - protein coding gene mitoguardin 1
Tssr32405 3 152290326 to 152290331 5 + TSS region transcription start site region 32405
Cpgi13947 3 152339761 to 152340655 894 CpG island CpG island 13947
Tssr36215 3 152340350 to 152340416 66 - TSS region transcription start site region 36215
Cpgi13948 3 152346150 to 152347117 967 CpG island CpG island 13948
Tssr32406 3 152346465 to 152346531 66 + TSS region transcription start site region 32406
Usp33 3 152346478 to 152393617 47139 + protein coding gene ubiquitin specific peptidase 33
Tssr32407 3 152348570 to 152348574 4 + TSS region transcription start site region 32407
Tssr32408 3 152350004 to 152350012 8 + TSS region transcription start site region 32408
Gm42967 3 152380857 to 152383168 2311 - unclassified gene predicted gene 42967
Gm43859 3 152383806 to 152385217 1411 - unclassified gene predicted gene 43859
Tssr32409 3 152385072 to 152385080 8 + TSS region transcription start site region 32409
Gm43858 3 152386260 to 152388037 1777 + unclassified gene predicted gene 43858
Gm43857 3 152391162 to 152394240 3078 - unclassified gene predicted gene 43857
Cpgi13949 3 152394567 to 152394762 195 CpG island CpG island 13949
Cpgi13950 3 152395295 to 152397273 1978 CpG island CpG island 13950
Tssr32410 3 152395444 to 152395489 45 + TSS region transcription start site region 32410
Zzz3 3 152395473 to 152462826 67353 + protein coding gene zinc finger, ZZ domain containing 3
Tssr32411 3 152395991 to 152396059 68 + TSS region transcription start site region 32411
Tssr32412 3 152396061 to 152396082 21 + TSS region transcription start site region 32412
Tssr32413 3 152396362 to 152396394 32 + TSS region transcription start site region 32413
Tssr32414 3 152396664 to 152396702 38 + TSS region transcription start site region 32414
Tssr32415 3 152415777 to 152415781 4 + TSS region transcription start site region 32415
D3Dcr21 3 152416809 to 152416917 108 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 21
Ak5 3 152462815 to 152668360 205545 - protein coding gene adenylate kinase 5
Tssr32416 3 152477918 to 152477941 23 + TSS region transcription start site region 32416
Cpgi13951 3 152478015 to 152478347 332 CpG island CpG island 13951
3110067G11Rik 3 152483527 to 152487908 4381 - protein coding gene RIKEN cDNA 3110067G11 gene
AI115009 3 152666913 to 152681432 14519 + antisense lncRNA gene expressed sequence AI115009
Cpgi13952 3 152667069 to 152668514 1445 CpG island CpG island 13952
Tssr36216 3 152667964 to 152667976 12 - TSS region transcription start site region 36216
Tssr36217 3 152668033 to 152668102 69 - TSS region transcription start site region 36217
Tssr36218 3 152668135 to 152668147 12 - TSS region transcription start site region 36218
Cpgi13953 3 152690278 to 152690431 153 CpG island CpG island 13953
Gm32085 3 152697823 to 152709908 12085 + lncRNA gene predicted gene, 32085
Tssr32417 3 152702665 to 152702706 41 + TSS region transcription start site region 32417
Cpgi13954 3 152713909 to 152714721 812 CpG island CpG island 13954
Pigk 3 152714085 to 152842926 128841 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class K
Tssr32418 3 152714094 to 152714137 43 + TSS region transcription start site region 32418
D3Dcr22 3 152731073 to 152731183 110 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 22
D3Mit323 3 152740311 to 152740430 119 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 323
D3Mit323.1 3 152740454 to 152740570 116 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 323.1
Gm40181 3 152752450 to 152756090 3640 - lncRNA gene predicted gene, 40181
Tssr32419 3 152763373 to 152763415 42 + TSS region transcription start site region 32419
Cpgi13955 3 152763567 to 152763771 204 CpG island CpG island 13955
Rpl29-ps1 3 152780774 to 152782061 1287 - pseudogene ribosomal protein L29, pseudogene 1
Tssr32420 3 152785438 to 152785457 19 + TSS region transcription start site region 32420
St6galnac5 3 152820709 to 152982207 161498 - protein coding gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
Tssr36219 3 152845810 to 152845819 9 - TSS region transcription start site region 36219
Cpgi13956 3 152864065 to 152864699 634 CpG island CpG island 13956
Gm16232 3 152876051 to 152876217 166 - pseudogene predicted gene 16232
Tssr32421 3 152884220 to 152884293 73 + TSS region transcription start site region 32421
Tssr32422 3 152884346 to 152884366 20 + TSS region transcription start site region 32422
D3Mit322 3 152886552 to 152886674 122 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 322
Gm46830 3 152906361 to 152920809 14448 + lncRNA gene predicted gene, 46830
Tssr32423 3 152908342 to 152908350 8 + TSS region transcription start site region 32423
Tssr32424 3 152912345 to 152912403 58 + TSS region transcription start site region 32424
Tssr32425 3 152912720 to 152912734 14 + TSS region transcription start site region 32425
Gm16213 3 152920240 to 152921399 1159 + antisense lncRNA gene predicted gene 16213
Tssr32426 3 152921152 to 152921155 3 + TSS region transcription start site region 32426
Tssr32427 3 152928889 to 152928900 11 + TSS region transcription start site region 32427
Tssr32428 3 152930044 to 152930048 4 + TSS region transcription start site region 32428
Gm16231 3 152943313 to 152943944 631 + antisense lncRNA gene predicted gene 16231
2900086E13Rik 3 152965432 to 152966416 984 unclassified gene RIKEN cDNA 2900086E13 gene
Gm42710 3 152965433 to 152966417 984 + unclassified gene predicted gene 42710
Tssr36220 3 152973352 to 152973364 12 - TSS region transcription start site region 36220
Tssr36221 3 152973628 to 152973640 12 - TSS region transcription start site region 36221
Tssr32429 3 152979753 to 152979778 25 + TSS region transcription start site region 32429
Cpgi13957 3 152980900 to 152981747 847 CpG island CpG island 13957
Cpgi13958 3 152982036 to 152982290 254 CpG island CpG island 13958
Tssr36222 3 152982187 to 152982216 29 - TSS region transcription start site region 36222
Tssr36223 3 152982240 to 152982251 11 - TSS region transcription start site region 36223
Gm40182 3 153068902 to 153075214 6312 + lncRNA gene predicted gene, 40182
Tssr32430 3 153078274 to 153078291 17 + TSS region transcription start site region 32430
Cpgi13959 3 153120095 to 153120516 421 CpG island CpG island 13959
4930482G09Rik 3 153147943 to 153152108 4165 - lncRNA gene RIKEN cDNA 4930482G09 gene
Tssr36224 3 153152075 to 153152086 11 - TSS region transcription start site region 36224
1700094M23Rik 3 153162728 to 153182815 20087 - lincRNA gene RIKEN cDNA 1700094M23 gene
St6galnac3 3 153202509 to 153725133 522624 - protein coding gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
D3Mit87 3 153213318 to 153213448 130 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 87
Gm33066 3 153220042 to 153228505 8463 + lncRNA gene predicted gene, 33066
Tssr36225 3 153225753 to 153225763 10 - TSS region transcription start site region 36225
Tssr32431 3 153260799 to 153260841 42 + TSS region transcription start site region 32431
Tssr36226 3 153263739 to 153263742 3 - TSS region transcription start site region 36226
1700012D16Rik 3 153296504 to 153298649 2145 - sense intronic lncRNA gene RIKEN cDNA 1700012D16 gene
Tssr36227 3 153298646 to 153298683 37 - TSS region transcription start site region 36227
A530083M17Rik 3 153309370 to 153312745 3375 - unclassified gene RIKEN cDNA A530083M17 gene
Gm27405 3 153313713 to 153313824 111 + miRNA gene predicted gene, 27405
Tssr36228 3 153322812 to 153322833 21 - TSS region transcription start site region 36228
D3Ertd258e 3 153360390 to 153360605 215 DNA segment DNA segment, Chr 3, ERATO Doi 258, expressed
1700015C17Rik 3 153467216 to 153478210 10994 - sense intronic lncRNA gene RIKEN cDNA 1700015C17 gene
4930597L12Rik 3 153473744 to 153474654 910 - unclassified non-coding RNA gene RIKEN cDNA 4930597L12 gene
Tssr36229 3 153474643 to 153474655 12 - TSS region transcription start site region 36229
Cpgi13960 3 153475481 to 153475828 347 CpG island CpG island 13960
Gm46831 3 153500110 to 153508546 8436 - lncRNA gene predicted gene, 46831
D3Mit294 3 153500421 to 153500542 121 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 294
D3Mit114a 3 153529518 to 153529616 98 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 114a
D3Mit114b 3 153529518 to 153529794 276 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 114b
D3Mit302 3 153583986 to 153584104 118 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 302
D3Dcr23 3 153583996 to 153584100 104 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 23
Gm32721 3 153585586 to 153591128 5542 + lncRNA gene predicted gene, 32721
Gm22136 3 153621702 to 153621969 267 + unclassified non-coding RNA gene predicted gene, 22136
Tssr36230 3 153624736 to 153624756 20 - TSS region transcription start site region 36230
Tssr32432 3 153630924 to 153630929 5 + TSS region transcription start site region 32432
Tssr36231 3 153631121 to 153631125 4 - TSS region transcription start site region 36231
Tssr36232 3 153633465 to 153633483 18 - TSS region transcription start site region 36232
Tssr36233 3 153633517 to 153633528 11 - TSS region transcription start site region 36233
Tssr36234 3 153650126 to 153650143 17 - TSS region transcription start site region 36234
Tssr36235 3 153650235 to 153650252 17 - TSS region transcription start site region 36235
Tssr36236 3 153650254 to 153650268 14 - TSS region transcription start site region 36236
Tssr32433 3 153675360 to 153675371 11 + TSS region transcription start site region 32433
Tssr32434 3 153675393 to 153675396 3 + TSS region transcription start site region 32434
Gm5858 3 153691408 to 153694821 3413 - pseudogene predicted gene 5858