Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:148919392-149819728

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(3Lphn2-Prkacb)1Hgc 3 146729579 to 148988730 2259151 chromosomal deletion deletion, Chr3, Human Genome Center 1
Adgrl2 3 148815586 to 148988730 173144 - protein coding gene adhesion G protein-coupled receptor L2
Tssr36075 3 148927955 to 148927957 2 - TSS region transcription start site region 36075
6720422M22Rik 3 148930834 to 148933779 2945 lncRNA gene RIKEN cDNA 6720422M22 gene
Tssr36076 3 148948905 to 148948917 12 - TSS region transcription start site region 36076
Cpgi13930 3 148987253 to 148990913 3660 CpG island CpG island 13930
Tssr36077 3 148989094 to 148989097 3 - TSS region transcription start site region 36077
Tssr36078 3 148989102 to 148989107 5 - TSS region transcription start site region 36078
Gm43573 3 148989152 to 149004031 14879 + antisense lncRNA gene predicted gene 43573
Tssr36079 3 148989348 to 148989351 3 - TSS region transcription start site region 36079
Tssr36080 3 148989378 to 148989389 11 - TSS region transcription start site region 36080
Tssr36081 3 148989405 to 148989412 7 - TSS region transcription start site region 36081
Tssr36082 3 148989443 to 148989496 53 - TSS region transcription start site region 36082
Tssr36083 3 148989513 to 148989522 9 - TSS region transcription start site region 36083
Tssr36084 3 148989532 to 148989553 21 - TSS region transcription start site region 36084
Tssr36085 3 148989556 to 148989570 14 - TSS region transcription start site region 36085
Tssr36086 3 148989712 to 148989751 39 - TSS region transcription start site region 36086
Tssr36087 3 148989986 to 148990044 58 - TSS region transcription start site region 36087
Tssr36088 3 148990100 to 148990123 23 - TSS region transcription start site region 36088
Tssr36089 3 148990519 to 148990561 42 - TSS region transcription start site region 36089
Tssr36090 3 148990569 to 148990593 24 - TSS region transcription start site region 36090
Gm30827 3 148996762 to 149011815 15053 + lncRNA gene predicted gene, 30827
Gm43572 3 149005496 to 149007443 1947 + unclassified non-coding RNA gene predicted gene 43572
Gm25127 3 149028932 to 149029038 106 + snRNA gene predicted gene, 25127
Tssr36091 3 149077089 to 149077100 11 - TSS region transcription start site region 36091
Tssr36092 3 149077114 to 149077128 14 - TSS region transcription start site region 36092
Tssr36093 3 149077151 to 149077160 9 - TSS region transcription start site region 36093
Tssr36094 3 149077179 to 149077193 14 - TSS region transcription start site region 36094
Tssr36095 3 149077236 to 149077266 30 - TSS region transcription start site region 36095
Tssr36096 3 149077341 to 149077363 22 - TSS region transcription start site region 36096
Gm30575 3 149082268 to 149096302 14034 + lncRNA gene predicted gene, 30575
Gm42647 3 149210271 to 149210729 458 + pseudogene predicted gene 42647
Tssr36097 3 149219424 to 149219433 9 - TSS region transcription start site region 36097
Gm10287 3 149221687 to 149225745 4058 - lincRNA gene predicted gene 10287
Cpgi13931 3 149225808 to 149225984 176 CpG island CpG island 13931
D3Mit293 3 149269724 to 149269826 102 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 293
D3Dcr18 3 149269724 to 149269831 107 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 18
Gm1653 3 149274737 to 149279980 5243 + lncRNA gene predicted gene 1653
8430415D16Rik 3 149280005 to 149280504 499 unclassified gene RIKEN cDNA 8430415D16 gene
Gm30382 3 149284418 to 149445301 160883 - lincRNA gene predicted gene, 30382
Tssr36098 3 149326765 to 149326768 3 - TSS region transcription start site region 36098
Tssr32375 3 149326993 to 149327026 33 + TSS region transcription start site region 32375
Tssr36099 3 149329706 to 149329711 5 - TSS region transcription start site region 36099
Tssr32376 3 149334839 to 149334869 30 + TSS region transcription start site region 32376
Gm5149 3 149335731 to 149340637 4906 + lincRNA gene predicted gene 5149
D3Dcr19 3 149337264 to 149337359 95 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 19
Gm26468 3 149340903 to 149341008 105 - snRNA gene predicted gene, 26468
Cpgi13932 3 149369392 to 149369728 336 CpG island CpG island 13932
Tssr1091 3 149423770 to 149423775 5 + TSS region transcription start site region 1091
Lfibq3 3 149426233 to 151564321 2138088 QTL liver fibrosis QTL 3
A630039O03Rik 3 149444227 to 149498001 53774 + lncRNA gene RIKEN cDNA A630039O03 gene
Tssr36100 3 149445186 to 149445244 58 - TSS region transcription start site region 36100
Tssr36101 3 149445253 to 149445265 12 - TSS region transcription start site region 36101
Tssr36102 3 149445267 to 149445278 11 - TSS region transcription start site region 36102
Tssr36103 3 149445351 to 149445369 18 - TSS region transcription start site region 36103
Tssr36104 3 149445376 to 149445417 41 - TSS region transcription start site region 36104
Tssr36105 3 149445453 to 149445495 42 - TSS region transcription start site region 36105
Gm31060 3 149498160 to 149516022 17862 + lncRNA gene predicted gene, 31060
Cpgi13933 3 149519327 to 149519481 154 CpG island CpG island 13933
D3Mit148 3 149522982 to 149523106 124 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 148
D3Dcr20 3 149523550 to 149523659 109 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 20
Gm31121 3 149562882 to 149660394 97512 - lincRNA gene predicted gene, 31121
D3Mit32 3 149748422 to 149748596 174 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 32