Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:148250409-153381674

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366 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae10 3 132030856 to 148745542 16714686 QTL experimental allergic encephalomyelitis susceptibility 10
Del(3Lphn2-Prkacb)1Hgc 3 146729579 to 148988730 2259151 chromosomal deletion deletion, Chr3, Human Genome Center 1
Gm29836 3 148337913 to 148342128 4215 + lncRNA gene predicted gene, 29836
Gm23131 3 148354087 to 148354218 131 - snoRNA gene predicted gene, 23131
Gm43576 3 148454941 to 148455811 870 + unclassified gene predicted gene 43576
4930408K12Rik 3 148508187 to 148509030 843 unclassified gene RIKEN cDNA 4930408K12 gene
Gm38068 3 148569064 to 148569603 539 + unclassified gene predicted gene, 38068
Gm43575 3 148653060 to 148653575 515 + pseudogene predicted gene 43575
D3Mit147 3 148745409 to 148745542 133 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 147
Hrtfm8 3 148745409 to 152886674 4141265 QTL heart failure modifier 8
D3Dcr17 3 148745414 to 148745529 115 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 17
Adgrl2 3 148815586 to 148988730 173144 - protein coding gene adhesion G protein-coupled receptor L2
Cpgi13927 3 148817422 to 148817975 553 CpG island CpG island 13927
Cpgi13928 3 148819616 to 148819949 333 CpG island CpG island 13928
Tssr36072 3 148819828 to 148819849 21 - TSS region transcription start site region 36072
Tssr36073 3 148861002 to 148861007 5 - TSS region transcription start site region 36073
Cpgi13929 3 148882804 to 148883092 288 CpG island CpG island 13929
Tssr36074 3 148917657 to 148917660 3 - TSS region transcription start site region 36074
Tssr36075 3 148927955 to 148927957 2 - TSS region transcription start site region 36075
6720422M22Rik 3 148930834 to 148933779 2945 lncRNA gene RIKEN cDNA 6720422M22 gene
Tssr36076 3 148948905 to 148948917 12 - TSS region transcription start site region 36076
Cpgi13930 3 148987253 to 148990913 3660 CpG island CpG island 13930
Tssr36077 3 148989094 to 148989097 3 - TSS region transcription start site region 36077
Tssr36078 3 148989102 to 148989107 5 - TSS region transcription start site region 36078
Gm43573 3 148989152 to 149004031 14879 + antisense lncRNA gene predicted gene 43573
Tssr36079 3 148989348 to 148989351 3 - TSS region transcription start site region 36079
Tssr36080 3 148989378 to 148989389 11 - TSS region transcription start site region 36080
Tssr36081 3 148989405 to 148989412 7 - TSS region transcription start site region 36081
Tssr36082 3 148989443 to 148989496 53 - TSS region transcription start site region 36082
Tssr36083 3 148989513 to 148989522 9 - TSS region transcription start site region 36083
Tssr36084 3 148989532 to 148989553 21 - TSS region transcription start site region 36084
Tssr36085 3 148989556 to 148989570 14 - TSS region transcription start site region 36085
Tssr36086 3 148989712 to 148989751 39 - TSS region transcription start site region 36086
Tssr36087 3 148989986 to 148990044 58 - TSS region transcription start site region 36087
Tssr36088 3 148990100 to 148990123 23 - TSS region transcription start site region 36088
Tssr36089 3 148990519 to 148990561 42 - TSS region transcription start site region 36089
Tssr36090 3 148990569 to 148990593 24 - TSS region transcription start site region 36090
Gm30827 3 148996762 to 149011815 15053 + lncRNA gene predicted gene, 30827
Gm43572 3 149005496 to 149007443 1947 + unclassified non-coding RNA gene predicted gene 43572
Gm25127 3 149028932 to 149029038 106 + snRNA gene predicted gene, 25127
Tssr36091 3 149077089 to 149077100 11 - TSS region transcription start site region 36091
Tssr36092 3 149077114 to 149077128 14 - TSS region transcription start site region 36092
Tssr36093 3 149077151 to 149077160 9 - TSS region transcription start site region 36093
Tssr36094 3 149077179 to 149077193 14 - TSS region transcription start site region 36094
Tssr36095 3 149077236 to 149077266 30 - TSS region transcription start site region 36095
Tssr36096 3 149077341 to 149077363 22 - TSS region transcription start site region 36096
Gm30575 3 149082268 to 149096302 14034 + lncRNA gene predicted gene, 30575
Gm42647 3 149210271 to 149210729 458 + pseudogene predicted gene 42647
Tssr36097 3 149219424 to 149219433 9 - TSS region transcription start site region 36097
Gm10287 3 149221687 to 149225745 4058 - lincRNA gene predicted gene 10287
Cpgi13931 3 149225808 to 149225984 176 CpG island CpG island 13931
D3Mit293 3 149269724 to 149269826 102 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 293
D3Dcr18 3 149269724 to 149269831 107 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 18
Gm1653 3 149274737 to 149279980 5243 + lncRNA gene predicted gene 1653
8430415D16Rik 3 149280005 to 149280504 499 unclassified gene RIKEN cDNA 8430415D16 gene
Gm30382 3 149284418 to 149445301 160883 - lincRNA gene predicted gene, 30382
Tssr36098 3 149326765 to 149326768 3 - TSS region transcription start site region 36098
Tssr32375 3 149326993 to 149327026 33 + TSS region transcription start site region 32375
Tssr36099 3 149329706 to 149329711 5 - TSS region transcription start site region 36099
Tssr32376 3 149334839 to 149334869 30 + TSS region transcription start site region 32376
Gm5149 3 149335731 to 149340637 4906 + lincRNA gene predicted gene 5149
D3Dcr19 3 149337264 to 149337359 95 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 19
Gm26468 3 149340903 to 149341008 105 - snRNA gene predicted gene, 26468
Cpgi13932 3 149369392 to 149369728 336 CpG island CpG island 13932
Tssr1091 3 149423770 to 149423775 5 + TSS region transcription start site region 1091
Lfibq3 3 149426233 to 151564321 2138088 QTL liver fibrosis QTL 3
A630039O03Rik 3 149444227 to 149498001 53774 + lncRNA gene RIKEN cDNA A630039O03 gene
Tssr36100 3 149445186 to 149445244 58 - TSS region transcription start site region 36100
Tssr36101 3 149445253 to 149445265 12 - TSS region transcription start site region 36101
Tssr36102 3 149445267 to 149445278 11 - TSS region transcription start site region 36102
Tssr36103 3 149445351 to 149445369 18 - TSS region transcription start site region 36103
Tssr36104 3 149445376 to 149445417 41 - TSS region transcription start site region 36104
Tssr36105 3 149445453 to 149445495 42 - TSS region transcription start site region 36105
Gm31060 3 149498160 to 149516022 17862 + lncRNA gene predicted gene, 31060
Cpgi13933 3 149519327 to 149519481 154 CpG island CpG island 13933
D3Mit148 3 149522982 to 149523106 124 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 148
D3Dcr20 3 149523550 to 149523659 109 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 20
Gm31121 3 149562882 to 149660394 97512 - lincRNA gene predicted gene, 31121
D3Mit32 3 149748422 to 149748596 174 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 32
Gm31244 3 149907519 to 149938892 31373 + lncRNA gene predicted gene, 31244
Tssr1092 3 149954587 to 149954594 7 + TSS region transcription start site region 1092
Tssr32377 3 150049725 to 150049731 6 + TSS region transcription start site region 32377
Rpsa-ps10 3 150072658 to 150073542 884 - pseudogene ribosomal protein SA, pseudogene 10
Tssr32378 3 150401911 to 150401947 36 + TSS region transcription start site region 32378
Gm40178 3 150401926 to 150408977 7051 + lncRNA gene predicted gene, 40178
Gm6439 3 150515220 to 150516081 861 - pseudogene predicted gene 6439
Cpgi13934 3 150515842 to 150516218 376 CpG island CpG island 13934
Gm43470 3 150588739 to 150612176 23437 + lincRNA gene predicted gene 43470
Tssr32379 3 150588811 to 150588822 11 + TSS region transcription start site region 32379
D3Mit128 3 150756256 to 150756405 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 128
Loco1 3 150756256 to 150756405 149 QTL locomotor activity 1
Mir3963 3 151023792 to 151023862 70 - miRNA gene microRNA 3963
Gm43468 3 151071387 to 151074558 3171 + lincRNA gene predicted gene 43468
Gm43469 3 151092134 to 151096767 4633 - unclassified gene predicted gene 43469
Gm43473 3 151117922 to 151123918 5996 - unclassified gene predicted gene 43473
Tssr164681 3 151198865 to 151198866 1 - TSS region transcription start site region 164681
4930555A03Rik 3 151293853 to 151296307 2454 + lincRNA gene RIKEN cDNA 4930555A03 gene
Tssr32380 3 151294141 to 151294178 37 + TSS region transcription start site region 32380
Tssr32381 3 151294203 to 151294218 15 + TSS region transcription start site region 32381
Tssr32382 3 151294229 to 151294243 14 + TSS region transcription start site region 32382
Tssr1093 3 151294519 to 151294529 10 + TSS region transcription start site region 1093
Tssr1094 3 151294531 to 151294546 15 + TSS region transcription start site region 1094
Gm42949 3 151333349 to 151337638 4289 + lincRNA gene predicted gene 42949
Tssr32383 3 151383668 to 151383674 6 + TSS region transcription start site region 32383
Tssr1095 3 151386373 to 151386380 7 + TSS region transcription start site region 1095
Tssr32384 3 151386392 to 151386401 9 + TSS region transcription start site region 32384
Cpgi13935 3 151437798 to 151438082 284 CpG island CpG island 13935
Adgrl4 3 151437882 to 151545081 107199 + protein coding gene adhesion G protein-coupled receptor L4
Tssr32385 3 151437890 to 151437914 24 + TSS region transcription start site region 32385
Tssr32386 3 151437921 to 151437956 35 + TSS region transcription start site region 32386
Tssr32387 3 151438059 to 151438074 15 + TSS region transcription start site region 32387
Tssr32388 3 151438160 to 151438168 8 + TSS region transcription start site region 32388
Tssr1096 3 151439232 to 151439239 7 + TSS region transcription start site region 1096
Tssr32389 3 151439243 to 151439260 17 + TSS region transcription start site region 32389
Tssr32390 3 151439388 to 151439429 41 + TSS region transcription start site region 32390
Tssr32391 3 151508031 to 151508043 12 + TSS region transcription start site region 32391
Gm24458 3 151608343 to 151608449 106 + snRNA gene predicted gene, 24458
Ifi44 3 151730922 to 151749959 19037 - protein coding gene interferon-induced protein 44
Tssr36106 3 151731063 to 151731067 4 - TSS region transcription start site region 36106
Tssr36107 3 151731346 to 151731369 23 - TSS region transcription start site region 36107
Tssr36108 3 151731393 to 151731406 13 - TSS region transcription start site region 36108
Tssr36109 3 151731464 to 151731482 18 - TSS region transcription start site region 36109
Tssr32392 3 151731526 to 151731538 12 + TSS region transcription start site region 32392
Tssr36110 3 151731527 to 151731550 23 - TSS region transcription start site region 36110
Tssr36111 3 151731578 to 151731626 48 - TSS region transcription start site region 36111
Tssr36112 3 151731649 to 151731673 24 - TSS region transcription start site region 36112
Tssr36113 3 151731701 to 151731702 1 - TSS region transcription start site region 36113
Tssr36114 3 151731710 to 151731728 18 - TSS region transcription start site region 36114
Tssr36115 3 151731729 to 151731764 35 - TSS region transcription start site region 36115
Tssr36116 3 151731783 to 151731816 33 - TSS region transcription start site region 36116
Tssr36117 3 151731856 to 151731874 18 - TSS region transcription start site region 36117
Tssr36118 3 151731880 to 151731891 11 - TSS region transcription start site region 36118
Tssr36119 3 151731937 to 151731948 11 - TSS region transcription start site region 36119
Tssr36120 3 151732014 to 151732027 13 - TSS region transcription start site region 36120
Tssr36121 3 151732030 to 151732050 20 - TSS region transcription start site region 36121
Tssr36122 3 151732067 to 151732085 18 - TSS region transcription start site region 36122
Tssr36123 3 151732086 to 151732097 11 - TSS region transcription start site region 36123
Tssr36124 3 151732098 to 151732114 16 - TSS region transcription start site region 36124
Tssr36125 3 151732140 to 151732141 1 - TSS region transcription start site region 36125
Tssr36126 3 151732178 to 151732196 18 - TSS region transcription start site region 36126
Tssr36127 3 151732231 to 151732236 5 - TSS region transcription start site region 36127
Tssr36128 3 151732239 to 151732284 45 - TSS region transcription start site region 36128
Tssr36129 3 151732295 to 151732300 5 - TSS region transcription start site region 36129
Tssr36130 3 151732314 to 151732324 10 - TSS region transcription start site region 36130
Tssr36131 3 151732333 to 151732340 7 - TSS region transcription start site region 36131
Tssr36132 3 151732493 to 151732504 11 - TSS region transcription start site region 36132
Tssr36133 3 151733885 to 151733888 3 - TSS region transcription start site region 36133
Tssr36134 3 151734857 to 151734868 11 - TSS region transcription start site region 36134
Tssr36135 3 151736949 to 151736968 19 - TSS region transcription start site region 36135
Tssr36136 3 151737315 to 151737327 12 - TSS region transcription start site region 36136
Tssr36137 3 151742274 to 151742285 11 - TSS region transcription start site region 36137
Tssr36138 3 151742295 to 151742312 17 - TSS region transcription start site region 36138
Tssr36139 3 151742314 to 151742333 19 - TSS region transcription start site region 36139
Tssr36140 3 151742365 to 151742382 17 - TSS region transcription start site region 36140
Tssr36141 3 151745539 to 151745574 35 - TSS region transcription start site region 36141
Tssr36142 3 151745953 to 151745974 21 - TSS region transcription start site region 36142
Tssr36143 3 151748532 to 151748572 40 - TSS region transcription start site region 36143
Tssr36144 3 151749368 to 151749388 20 - TSS region transcription start site region 36144
Tssr36145 3 151749556 to 151749617 61 - TSS region transcription start site region 36145
Tssr36146 3 151749877 to 151749919 42 - TSS region transcription start site region 36146
Ifi44l 3 151758737 to 151762891 4154 - protein coding gene interferon-induced protein 44 like
Tssr36147 3 151762458 to 151762470 12 - TSS region transcription start site region 36147
Tssr36148 3 151762495 to 151762521 26 - TSS region transcription start site region 36148
Tssr36149 3 151764122 to 151764162 40 - TSS region transcription start site region 36149
Tssr36150 3 151764163 to 151764180 17 - TSS region transcription start site region 36150
Tssr36151 3 151764184 to 151764202 18 - TSS region transcription start site region 36151
Tssr36152 3 151764210 to 151764225 15 - TSS region transcription start site region 36152
Tssr36153 3 151764248 to 151764260 12 - TSS region transcription start site region 36153
Ptgfr 3 151798610 to 151837528 38918 - protein coding gene prostaglandin F receptor
Tssr36154 3 151835930 to 151835944 14 - TSS region transcription start site region 36154
Tssr36155 3 151835967 to 151835979 12 - TSS region transcription start site region 36155
Gm43618 3 151836505 to 151839955 3450 + unclassified gene predicted gene 43618
Cpgi13936 3 151837226 to 151837648 422 CpG island CpG island 13936
Tssr36156 3 151837428 to 151837441 13 - TSS region transcription start site region 36156
Tssr36157 3 151837451 to 151837528 77 - TSS region transcription start site region 36157
Gm31596 3 151846223 to 151912117 65894 - lncRNA gene predicted gene, 31596
Gm43617 3 151887303 to 151895101 7798 + lincRNA gene predicted gene 43617
Gm25056 3 151926348 to 151926409 61 - snRNA gene predicted gene, 25056
Gm2939 3 151959185 to 151959662 477 + pseudogene predicted gene 2939
Gm2860 3 151972802 to 151973508 706 - pseudogene predicted gene 2860
Tssr32393 3 151988440 to 151988447 7 + TSS region transcription start site region 32393
Gm43619 3 151988454 to 151992332 3878 + lincRNA gene predicted gene 43619
Tssr36158 3 152005498 to 152005508 10 - TSS region transcription start site region 36158
Gm9682 3 152071246 to 152071801 555 - pseudogene predicted pseudogene 9682
Cpgi13937 3 152083104 to 152083491 387 CpG island CpG island 13937
Cpgi13938 3 152092503 to 152092834 331 CpG island CpG island 13938
Gipc2 3 152093839 to 152165900 72061 - protein coding gene GIPC PDZ domain containing family, member 2
Gm40179 3 152104061 to 152106918 2857 - lncRNA gene predicted gene, 40179
Cpgi13939 3 152105428 to 152105717 289 CpG island CpG island 13939
Gm31881 3 152106439 to 152107383 944 + antisense lncRNA gene predicted gene, 31881
Cpgi13940 3 152106530 to 152107307 777 CpG island CpG island 13940
Tssr36159 3 152107197 to 152107201 4 - TSS region transcription start site region 36159
Tssr36160 3 152108736 to 152108772 36 - TSS region transcription start site region 36160
Cpgi13941 3 152110957 to 152111174 217 CpG island CpG island 13941
Tssr1097 3 152114909 to 152114932 23 - TSS region transcription start site region 1097
Tssr1098 3 152120096 to 152120114 18 - TSS region transcription start site region 1098
Tssr32394 3 152120310 to 152120320 10 + TSS region transcription start site region 32394
Tssr32395 3 152122974 to 152122981 7 + TSS region transcription start site region 32395
Tssr1099 3 152147377 to 152147386 9 + TSS region transcription start site region 1099
Gm16198 3 152153447 to 152154116 669 + pseudogene predicted gene 16198