Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Ap6q | 3 | 46874371 | QTL | alcohol preference 6 QTL | ||
Orgwq5 | 3 | 40129433 | QTL | organ weight QTL 5 | ||
Eae10 | 3 | 16714686 | QTL | experimental allergic encephalomyelitis susceptibility 10 | ||
Sum2 | 3 | 11519107 | heritable phenotypic marker | suppressor of methyl CpG binding protein 2, 2 | ||
Hrtfm2 | 3 | 3775480 | QTL | heart failure modifier 2 | ||
Cpgi13919 | 3 | 647 | CpG island | CpG island 13919 | ||
Ctbs | 3 | 15382 | + | protein coding gene | chitobiase | |
Tssr32348 | 3 | 36 | + | TSS region | transcription start site region 32348 | |
Tssr32349 | 3 | 18 | + | TSS region | transcription start site region 32349 | |
Tssr32350 | 3 | 5 | + | TSS region | transcription start site region 32350 | |
Spata1 | 3 | 42557 | - | protein coding gene | spermatogenesis associated 1 | |
Tssr36034 | 3 | 5 | - | TSS region | transcription start site region 36034 | |
Tssr36035 | 3 | 11 | - | TSS region | transcription start site region 36035 | |
Cpgi13920 | 3 | 1186 | CpG island | CpG island 13920 | ||
Tssr32351 | 3 | 59 | + | TSS region | transcription start site region 32351 | |
Tssr36036 | 3 | 82 | - | TSS region | transcription start site region 36036 | |
Tssr36037 | 3 | 11 | - | TSS region | transcription start site region 36037 | |
Tssr32352 | 3 | 15 | + | TSS region | transcription start site region 32352 | |
Gng5 | 3 | 5707 | + | protein coding gene | guanine nucleotide binding protein (G protein), gamma 5 | |
Tssr32353 | 3 | 36 | + | TSS region | transcription start site region 32353 | |
Tssr32354 | 3 | 21 | + | TSS region | transcription start site region 32354 | |
Tssr36038 | 3 | 34 | - | TSS region | transcription start site region 36038 | |
Tssr32355 | 3 | 3 | + | TSS region | transcription start site region 32355 | |
Tssr32356 | 3 | 24 | + | TSS region | transcription start site region 32356 | |
Tssr32357 | 3 | 22 | + | TSS region | transcription start site region 32357 | |
Rpf1 | 3 | 15097 | - | protein coding gene | ribosome production factor 1 homolog | |
Cpgi13921 | 3 | 868 | CpG island | CpG island 13921 | ||
Tssr32358 | 3 | 27 | + | TSS region | transcription start site region 32358 | |
Tssr36039 | 3 | 34 | - | TSS region | transcription start site region 36039 | |
Tssr32359 | 3 | 5 | + | TSS region | transcription start site region 32359 | |
Gm36259 | 3 | 391 | - | pseudogene | predicted gene, 36259 | |
Tssr32360 | 3 | 32 | + | TSS region | transcription start site region 32360 | |
Tssr36040 | 3 | 23 | - | TSS region | transcription start site region 36040 | |
Tssr36041 | 3 | 4 | - | TSS region | transcription start site region 36041 | |
Dnase2b | 3 | 34611 | - | protein coding gene | deoxyribonuclease II beta | |
Tssr36042 | 3 | 3 | - | TSS region | transcription start site region 36042 | |
Cpgi13922 | 3 | 196 | CpG island | CpG island 13922 | ||
Tssr36043 | 3 | 23 | - | TSS region | transcription start site region 36043 | |
Tssr36044 | 3 | 15 | - | TSS region | transcription start site region 36044 | |
Tssr36045 | 3 | 11 | - | TSS region | transcription start site region 36045 | |
Tssr36046 | 3 | 23 | - | TSS region | transcription start site region 36046 | |
Tssr32361 | 3 | 20 | + | TSS region | transcription start site region 32361 | |
Uox | 3 | 34334 | + | protein coding gene | urate oxidase | |
Tssr32362 | 3 | 6 | + | TSS region | transcription start site region 32362 | |
Tssr32363 | 3 | 13 | + | TSS region | transcription start site region 32363 | |
Tssr32364 | 3 | 10 | + | TSS region | transcription start site region 32364 | |
Tssr32365 | 3 | 15 | + | TSS region | transcription start site region 32365 | |
Tssr32366 | 3 | 35 | + | TSS region | transcription start site region 32366 | |
Tssr36047 | 3 | 17 | - | TSS region | transcription start site region 36047 | |
Tssr36048 | 3 | 5 | - | TSS region | transcription start site region 36048 | |
Tssr32367 | 3 | 11 | + | TSS region | transcription start site region 32367 | |
Tssr32368 | 3 | 12 | + | TSS region | transcription start site region 32368 | |
Gm16325 | 3 | 9783 | + | antisense lncRNA gene | predicted gene 16325 | |
4930503B20Rik | 3 | 6124 | - | protein coding gene | RIKEN cDNA 4930503B20 gene | |
Samd13 | 3 | 40397 | - | protein coding gene | sterile alpha motif domain containing 13 | |
Tssr36049 | 3 | 14 | - | TSS region | transcription start site region 36049 | |
Tssr36050 | 3 | 7 | - | TSS region | transcription start site region 36050 | |
Tssr36051 | 3 | 23 | - | TSS region | transcription start site region 36051 | |
Tssr1086 | 3 | 5 | - | TSS region | transcription start site region 1086 | |
Tssr1087 | 3 | 5 | - | TSS region | transcription start site region 1087 | |
Tssr1088 | 3 | 12 | - | TSS region | transcription start site region 1088 | |
Gm40169 | 3 | 3347 | + | lncRNA gene | predicted gene, 40169 | |
Tssr36052 | 3 | 4 | - | TSS region | transcription start site region 36052 | |
Cpgi13923 | 3 | 706 | CpG island | CpG island 13923 | ||
Gm36521 | 3 | 3256 | + | lncRNA gene | predicted gene, 36521 | |
Gm9480 | 3 | 615 | + | pseudogene | predicted gene 9480 | |
Del(3Lphn2-Prkacb)1Hgc | 3 | 2259151 | chromosomal deletion | deletion, Chr3, Human Genome Center 1 | ||
Prkacb | 3 | 83367 | - | protein coding gene | protein kinase, cAMP dependent, catalytic, beta | |
Tssr36053 | 3 | 10 | - | TSS region | transcription start site region 36053 | |
Tssr36054 | 3 | 33 | - | TSS region | transcription start site region 36054 | |
Tssr36055 | 3 | 64 | - | TSS region | transcription start site region 36055 | |
Tssr36056 | 3 | 64 | - | TSS region | transcription start site region 36056 | |
Tssr36057 | 3 | 14 | - | TSS region | transcription start site region 36057 | |
Tssr36058 | 3 | 33 | - | TSS region | transcription start site region 36058 | |
Tssr36059 | 3 | 9 | - | TSS region | transcription start site region 36059 | |
Tssr36060 | 3 | 19 | - | TSS region | transcription start site region 36060 | |
Tssr36061 | 3 | 26 | - | TSS region | transcription start site region 36061 | |
Tssr36062 | 3 | 61 | - | TSS region | transcription start site region 36062 | |
Tssr36063 | 3 | 3 | - | TSS region | transcription start site region 36063 | |
Tssr36064 | 3 | 38 | - | TSS region | transcription start site region 36064 | |
Tssr36065 | 3 | 80 | - | TSS region | transcription start site region 36065 | |
Gm19104 | 3 | 595 | + | pseudogene | predicted gene, 19104 | |
Cpgi13924 | 3 | 1216 | CpG island | CpG island 13924 | ||
Tssr36066 | 3 | 49 | - | TSS region | transcription start site region 36066 | |
Tssr36067 | 3 | 21 | - | TSS region | transcription start site region 36067 | |
Tssr36068 | 3 | 32 | - | TSS region | transcription start site region 36068 | |
Tssr36069 | 3 | 25 | - | TSS region | transcription start site region 36069 | |
Gm10288 | 3 | 536 | - | pseudogene | predicted gene 10288 | |
Tssr36070 | 3 | 2 | - | TSS region | transcription start site region 36070 | |
Cpgi13925 | 3 | 533 | CpG island | CpG island 13925 | ||
Tssr32369 | 3 | 79 | + | TSS region | transcription start site region 32369 | |
Ttll7 | 3 | 131642 | + | protein coding gene | tubulin tyrosine ligase-like family, member 7 | |
Tssr32370 | 3 | 5 | + | TSS region | transcription start site region 32370 | |
Tssr32371 | 3 | 15 | + | TSS region | transcription start site region 32371 | |
Tssr1089 | 3 | 55 | + | TSS region | transcription start site region 1089 | |
Tssr1090 | 3 | 3 | + | TSS region | transcription start site region 1090 | |
Gm29771 | 3 | 32565 | + | lincRNA gene | predicted gene, 29771 | |
Gm36726 | 3 | 4209 | - | lncRNA gene | predicted gene, 36726 | |
Cpgi13926 | 3 | 661 | CpG island | CpG island 13926 | ||
Gm6074 | 3 | 450 | - | pseudogene | predicted gene 6074 | |
Tssr36071 | 3 | 3 | - | TSS region | transcription start site region 36071 | |
Gm40171 | 3 | 5573 | + | lncRNA gene | predicted gene, 40171 | |
D3Mit261 | 3 | 191 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 261 | ||
D3Mit86 | 3 | 152 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 86 | ||
Gm36831 | 3 | 9638 | + | lincRNA gene | predicted gene, 36831 | |
Tssr32372 | 3 | 8 | + | TSS region | transcription start site region 32372 | |
Tssr32373 | 3 | 15 | + | TSS region | transcription start site region 32373 | |
Tssr32374 | 3 | 4 | + | TSS region | transcription start site region 32374 | |
Gm40172 | 3 | 3408 | + | lncRNA gene | predicted gene, 40172 | |
Gm37803 | 3 | 4557 | - | unclassified gene | predicted gene, 37803 | |
Gm37041 | 3 | 4400 | + | lincRNA gene | predicted gene, 37041 | |
D3Mit31 | 3 | 223 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 31 | ||
Orgwq4 | 3 | -117585614 | QTL | organ weight QTL 4 | ||
Gm36888 | 3 | 14836 | - | lincRNA gene | predicted gene, 36888 | |
D3Mit1002 | 3 | 120 | DNA segment | DNA Segment, Chr 3, Massachusetts Institute of Technology 1002 | ||
D3Mit1003 | 3 | 163 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 1003 | ||
D3Mit321 | 3 | 110 | DNA segment | DNA Segment, Chr 3, Massachusetts Institute of Technology 321 | ||
Gm40173 | 3 | 2915 | - | lncRNA gene | predicted gene, 40173 | |
Gm40175 | 3 | 50948 | + | lncRNA gene | predicted gene, 40175 | |
Gm40174 | 3 | 1565 | + | lncRNA gene | predicted gene, 40174 | |
Alcp3 | 3 | 130 | QTL | alcohol preference locus 3, male specific | ||
D3Mit200 | 3 | 130 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 200 | ||
Gm40176 | 3 | 5421 | + | lncRNA gene | predicted gene, 40176 | |
Gm43574 | 3 | 11354 | + | unclassified non-coding RNA gene | predicted gene 43574 | |
D3Mit44 | 3 | 142 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 44 | ||
Tbbr1 | 3 | 147 | QTL | Trypanosoma brucei brucei response 1 | ||
D3Mit45 | 3 | 147 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 45 | ||
Gm29836 | 3 | 4215 | + | lncRNA gene | predicted gene, 29836 | |
Gm23131 | 3 | 131 | - | snoRNA gene | predicted gene, 23131 | |
Gm43576 | 3 | 870 | + | unclassified gene | predicted gene 43576 | |
4930408K12Rik | 3 | 843 | unclassified gene | RIKEN cDNA 4930408K12 gene | ||
Gm38068 | 3 | 539 | + | unclassified gene | predicted gene, 38068 | |
Gm43575 | 3 | 515 | + | pseudogene | predicted gene 43575 | |
Hrtfm8 | 3 | 4141265 | QTL | heart failure modifier 8 | ||
D3Mit147 | 3 | 133 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 147 | ||
D3Dcr17 | 3 | 115 | DNA segment | DNA Segment, Chr 3, Derry C. Roopenian 17 | ||
Adgrl2 | 3 | 173144 | - | protein coding gene | adhesion G protein-coupled receptor L2 | |
Cpgi13927 | 3 | 553 | CpG island | CpG island 13927 | ||
Cpgi13928 | 3 | 333 | CpG island | CpG island 13928 | ||
Tssr36072 | 3 | 21 | - | TSS region | transcription start site region 36072 | |
Tssr36073 | 3 | 5 | - | TSS region | transcription start site region 36073 | |
Cpgi13929 | 3 | 288 | CpG island | CpG island 13929 | ||
Tssr36074 | 3 | 3 | - | TSS region | transcription start site region 36074 | |
Tssr36075 | 3 | 2 | - | TSS region | transcription start site region 36075 | |
6720422M22Rik | 3 | 2945 | lncRNA gene | RIKEN cDNA 6720422M22 gene | ||
Tssr36076 | 3 | 12 | - | TSS region | transcription start site region 36076 | |
Cpgi13930 | 3 | 3660 | CpG island | CpG island 13930 | ||
Tssr36077 | 3 | 3 | - | TSS region | transcription start site region 36077 | |
Tssr36078 | 3 | 5 | - | TSS region | transcription start site region 36078 | |
Gm43573 | 3 | 14879 | + | antisense lncRNA gene | predicted gene 43573 | |
Tssr36079 | 3 | 3 | - | TSS region | transcription start site region 36079 | |
Tssr36080 | 3 | 11 | - | TSS region | transcription start site region 36080 | |
Tssr36081 | 3 | 7 | - | TSS region | transcription start site region 36081 | |
Tssr36082 | 3 | 53 | - | TSS region | transcription start site region 36082 | |
Tssr36083 | 3 | 9 | - | TSS region | transcription start site region 36083 | |
Tssr36084 | 3 | 21 | - | TSS region | transcription start site region 36084 | |
Tssr36085 | 3 | 14 | - | TSS region | transcription start site region 36085 | |
Tssr36086 | 3 | 39 | - | TSS region | transcription start site region 36086 | |
Tssr36087 | 3 | 58 | - | TSS region | transcription start site region 36087 | |
Tssr36088 | 3 | 23 | - | TSS region | transcription start site region 36088 | |
Tssr36089 | 3 | 42 | - | TSS region | transcription start site region 36089 | |
Tssr36090 | 3 | 24 | - | TSS region | transcription start site region 36090 | |
Gm30827 | 3 | 15053 | + | lncRNA gene | predicted gene, 30827 | |
Gm43572 | 3 | 1947 | + | unclassified non-coding RNA gene | predicted gene 43572 | |
Gm25127 | 3 | 106 | + | snRNA gene | predicted gene, 25127 | |
Tssr36091 | 3 | 11 | - | TSS region | transcription start site region 36091 | |
Tssr36092 | 3 | 14 | - | TSS region | transcription start site region 36092 | |
Tssr36093 | 3 | 9 | - | TSS region | transcription start site region 36093 | |
Tssr36094 | 3 | 14 | - | TSS region | transcription start site region 36094 | |
Tssr36095 | 3 | 30 | - | TSS region | transcription start site region 36095 | |
Tssr36096 | 3 | 22 | - | TSS region | transcription start site region 36096 | |
Gm30575 | 3 | 14034 | + | lncRNA gene | predicted gene, 30575 | |
Gm42647 | 3 | 458 | + | pseudogene | predicted gene 42647 | |
Tssr36097 | 3 | 9 | - | TSS region | transcription start site region 36097 | |
Gm10287 | 3 | 4058 | - | lincRNA gene | predicted gene 10287 | |
Cpgi13931 | 3 | 176 | CpG island | CpG island 13931 | ||
D3Dcr18 | 3 | 107 | DNA segment | DNA Segment, Chr 3, Derry C. Roopenian 18 | ||
D3Mit293 | 3 | 102 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 293 |