Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:146244579-149473730

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221 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ap6q 3 100465596 to 147339967 46874371 QTL alcohol preference 6 QTL
Orgwq5 3 107469620 to 147599053 40129433 QTL organ weight QTL 5
Eae10 3 132030856 to 148745542 16714686 QTL experimental allergic encephalomyelitis susceptibility 10
Ccs3 3 132048775 to 146311914 14263139 QTL colon cancer susceptibility 3
Sum2 3 136371919 to 147891026 11519107 heritable phenotypic marker suppressor of methyl CpG binding protein 2, 2
Hrtfm2 3 143564487 to 147339967 3775480 QTL heart failure modifier 2
Lpar3 3 146220963 to 146286186 65223 + protein coding gene lysophosphatidic acid receptor 3
Cpgi13915 3 146284666 to 146285049 383 CpG island CpG island 13915
D3Mit292 3 146311796 to 146311914 118 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 292
Gm43334 3 146324420 to 146325737 1317 + unclassified gene predicted gene 43334
Tssr32343 3 146325280 to 146325282 2 + TSS region transcription start site region 32343
D3Mit259 3 146337217 to 146337306 89 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 259
D3Mit259.1 3 146337399 to 146337511 112 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 259.1
Cpgi13916 3 146345285 to 146345514 229 CpG island CpG island 13916
Gm40167 3 146346434 to 146351214 4780 + lncRNA gene predicted gene, 40167
Gm10636 3 146367153 to 146378944 11791 - lincRNA gene predicted gene 10636
Tssr36032 3 146378942 to 146378946 4 - TSS region transcription start site region 36032
Gm22078 3 146387742 to 146387844 102 - snRNA gene predicted gene, 22078
Cpgi13917 3 146392918 to 146393173 255 CpG island CpG island 13917
Gm22901 3 146399134 to 146399217 83 - miRNA gene predicted gene, 22901
Cpgi13918 3 146404151 to 146405416 1265 CpG island CpG island 13918
Tssr32344 3 146404631 to 146404738 107 + TSS region transcription start site region 32344
Ssx2ip 3 146404642 to 146440144 35502 + protein coding gene synovial sarcoma, X 2 interacting protein
Tssr32345 3 146404815 to 146404833 18 + TSS region transcription start site region 32345
Tssr32346 3 146404844 to 146404877 33 + TSS region transcription start site region 32346
Tssr1085 3 146404954 to 146404966 12 + TSS region transcription start site region 1085
Tssr32347 3 146405008 to 146405030 22 + TSS region transcription start site region 32347
Tssr36033 3 146405794 to 146405828 34 - TSS region transcription start site region 36033
Cpgi13919 3 146450329 to 146450976 647 CpG island CpG island 13919
Ctbs 3 146450467 to 146465849 15382 + protein coding gene chitobiase
Tssr32348 3 146450467 to 146450503 36 + TSS region transcription start site region 32348
Tssr32349 3 146450518 to 146450536 18 + TSS region transcription start site region 32349
Tssr32350 3 146451623 to 146451628 5 + TSS region transcription start site region 32350
Spata1 3 146457196 to 146499753 42557 - protein coding gene spermatogenesis associated 1
Tssr36034 3 146477376 to 146477381 5 - TSS region transcription start site region 36034
Tssr36035 3 146495128 to 146495139 11 - TSS region transcription start site region 36035
Cpgi13920 3 146499337 to 146500523 1186 CpG island CpG island 13920
Tssr32351 3 146499705 to 146499764 59 + TSS region transcription start site region 32351
Tssr36036 3 146499721 to 146499803 82 - TSS region transcription start site region 36036
Tssr36037 3 146499807 to 146499818 11 - TSS region transcription start site region 36037
Tssr32352 3 146499828 to 146499843 15 + TSS region transcription start site region 32352
Gng5 3 146499836 to 146505543 5707 + protein coding gene guanine nucleotide binding protein (G protein), gamma 5
Tssr32353 3 146499850 to 146499886 36 + TSS region transcription start site region 32353
Tssr32354 3 146500071 to 146500092 21 + TSS region transcription start site region 32354
Tssr36038 3 146500088 to 146500122 34 - TSS region transcription start site region 36038
Tssr32355 3 146500131 to 146500134 3 + TSS region transcription start site region 32355
Tssr32356 3 146500161 to 146500185 24 + TSS region transcription start site region 32356
Tssr32357 3 146500189 to 146500211 22 + TSS region transcription start site region 32357
Rpf1 3 146506340 to 146521437 15097 - protein coding gene ribosome production factor 1 homolog
Cpgi13921 3 146520696 to 146521564 868 CpG island CpG island 13921
Tssr32358 3 146521156 to 146521183 27 + TSS region transcription start site region 32358
Tssr36039 3 146521396 to 146521430 34 - TSS region transcription start site region 36039
Tssr32359 3 146549199 to 146549204 5 + TSS region transcription start site region 32359
Gm36259 3 146562878 to 146563269 391 - pseudogene predicted gene, 36259
Tssr32360 3 146570392 to 146570424 32 + TSS region transcription start site region 32360
Tssr36040 3 146571780 to 146571803 23 - TSS region transcription start site region 36040
Tssr36041 3 146571882 to 146571886 4 - TSS region transcription start site region 36041
Dnase2b 3 146580985 to 146615596 34611 - protein coding gene deoxyribonuclease II beta
Tssr36042 3 146586381 to 146586384 3 - TSS region transcription start site region 36042
Cpgi13922 3 146586756 to 146586952 196 CpG island CpG island 13922
Tssr36043 3 146596493 to 146596516 23 - TSS region transcription start site region 36043
Tssr36044 3 146596518 to 146596533 15 - TSS region transcription start site region 36044
Tssr36045 3 146596571 to 146596582 11 - TSS region transcription start site region 36045
Tssr36046 3 146596588 to 146596611 23 - TSS region transcription start site region 36046
Tssr32361 3 146597135 to 146597155 20 + TSS region transcription start site region 32361
Uox 3 146597149 to 146631483 34334 + protein coding gene urate oxidase
Tssr32362 3 146598983 to 146598989 6 + TSS region transcription start site region 32362
Tssr32363 3 146602298 to 146602311 13 + TSS region transcription start site region 32363
Tssr32364 3 146602388 to 146602398 10 + TSS region transcription start site region 32364
Tssr32365 3 146602497 to 146602512 15 + TSS region transcription start site region 32365
Tssr32366 3 146602637 to 146602672 35 + TSS region transcription start site region 32366
Tssr36047 3 146615587 to 146615604 17 - TSS region transcription start site region 36047
Tssr36048 3 146615626 to 146615631 5 - TSS region transcription start site region 36048
Tssr32367 3 146618664 to 146618675 11 + TSS region transcription start site region 32367
Tssr32368 3 146630633 to 146630645 12 + TSS region transcription start site region 32368
Gm16325 3 146641932 to 146651715 9783 + antisense lncRNA gene predicted gene 16325
4930503B20Rik 3 146645193 to 146651317 6124 - protein coding gene RIKEN cDNA 4930503B20 gene
Samd13 3 146645195 to 146685592 40397 - protein coding gene sterile alpha motif domain containing 13
Tssr36049 3 146648298 to 146648312 14 - TSS region transcription start site region 36049
Tssr36050 3 146651291 to 146651298 7 - TSS region transcription start site region 36050
Tssr36051 3 146651304 to 146651327 23 - TSS region transcription start site region 36051
Tssr1086 3 146651327 to 146651332 5 - TSS region transcription start site region 1086
Tssr1087 3 146651334 to 146651339 5 - TSS region transcription start site region 1087
Tssr1088 3 146651361 to 146651373 12 - TSS region transcription start site region 1088
Gm40169 3 146661120 to 146664467 3347 + lncRNA gene predicted gene, 40169
Tssr36052 3 146683262 to 146683266 4 - TSS region transcription start site region 36052
Cpgi13923 3 146684922 to 146685628 706 CpG island CpG island 13923
Gm36521 3 146685051 to 146688307 3256 + lncRNA gene predicted gene, 36521
Gm9480 3 146696219 to 146696834 615 + pseudogene predicted gene 9480
Prkacb 3 146729579 to 146812946 83367 - protein coding gene protein kinase, cAMP dependent, catalytic, beta
Del(3Lphn2-Prkacb)1Hgc 3 146729579 to 148988730 2259151 chromosomal deletion deletion, Chr3, Human Genome Center 1
Tssr36053 3 146731248 to 146731258 10 - TSS region transcription start site region 36053
Tssr36054 3 146748022 to 146748055 33 - TSS region transcription start site region 36054
Tssr36055 3 146769955 to 146770019 64 - TSS region transcription start site region 36055
Tssr36056 3 146770025 to 146770089 64 - TSS region transcription start site region 36056
Tssr36057 3 146770132 to 146770146 14 - TSS region transcription start site region 36057
Tssr36058 3 146770218 to 146770251 33 - TSS region transcription start site region 36058
Tssr36059 3 146770447 to 146770456 9 - TSS region transcription start site region 36059
Tssr36060 3 146770547 to 146770566 19 - TSS region transcription start site region 36060
Tssr36061 3 146770576 to 146770602 26 - TSS region transcription start site region 36061
Tssr36062 3 146770603 to 146770664 61 - TSS region transcription start site region 36062
Tssr36063 3 146771348 to 146771351 3 - TSS region transcription start site region 36063
Tssr36064 3 146781213 to 146781251 38 - TSS region transcription start site region 36064
Tssr36065 3 146781351 to 146781431 80 - TSS region transcription start site region 36065
Gm19104 3 146803216 to 146803811 595 + pseudogene predicted gene, 19104
Cpgi13924 3 146812307 to 146813523 1216 CpG island CpG island 13924
Tssr36066 3 146812871 to 146812920 49 - TSS region transcription start site region 36066
Tssr36067 3 146812925 to 146812946 21 - TSS region transcription start site region 36067
Tssr36068 3 146812951 to 146812983 32 - TSS region transcription start site region 36068
Tssr36069 3 146812988 to 146813013 25 - TSS region transcription start site region 36069
Gm10288 3 146838811 to 146839347 536 - pseudogene predicted gene 10288
Tssr36070 3 146839365 to 146839367 2 - TSS region transcription start site region 36070
Cpgi13925 3 146852130 to 146852663 533 CpG island CpG island 13925
Tssr32369 3 146852359 to 146852438 79 + TSS region transcription start site region 32369
Ttll7 3 146852367 to 146984009 131642 + protein coding gene tubulin tyrosine ligase-like family, member 7
Tssr32370 3 146894328 to 146894333 5 + TSS region transcription start site region 32370
Tssr32371 3 146899177 to 146899192 15 + TSS region transcription start site region 32371
Tssr1089 3 146899457 to 146899512 55 + TSS region transcription start site region 1089
Tssr1090 3 147064430 to 147064433 3 + TSS region transcription start site region 1090
Gm29771 3 147096184 to 147128749 32565 + lincRNA gene predicted gene, 29771
Gm36726 3 147121561 to 147125770 4209 - lncRNA gene predicted gene, 36726
Cpgi13926 3 147181994 to 147182655 661 CpG island CpG island 13926
Gm6074 3 147192468 to 147192918 450 - pseudogene predicted gene 6074
Tssr36071 3 147204638 to 147204641 3 - TSS region transcription start site region 36071
Gm40171 3 147307242 to 147312815 5573 + lncRNA gene predicted gene, 40171
D3Mit261 3 147334834 to 147335025 191 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 261
D3Mit86 3 147339815 to 147339967 152 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 86
Gm36831 3 147389647 to 147399285 9638 + lincRNA gene predicted gene, 36831
Tssr32372 3 147389712 to 147389720 8 + TSS region transcription start site region 32372
Tssr32373 3 147389739 to 147389754 15 + TSS region transcription start site region 32373
Tssr32374 3 147399089 to 147399093 4 + TSS region transcription start site region 32374
Gm40172 3 147399358 to 147402766 3408 + lncRNA gene predicted gene, 40172
Gm37803 3 147404519 to 147409076 4557 - unclassified gene predicted gene, 37803
Gm37041 3 147428889 to 147433289 4400 + lincRNA gene predicted gene, 37041
D3Mit31 3 147598830 to 147599053 223 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 31
Orgwq4 3 147599053 to 30013439 -117585614 QTL organ weight QTL 4
Gm36888 3 147620811 to 147635647 14836 - lincRNA gene predicted gene, 36888
D3Mit1002 3 147696653 to 147696773 120 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 1002
D3Mit1003 3 147696749 to 147696912 163 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 1003
D3Mit321 3 147890916 to 147891026 110 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 321
Gm40173 3 147921349 to 147924264 2915 - lncRNA gene predicted gene, 40173
Gm40175 3 147968348 to 148019296 50948 + lncRNA gene predicted gene, 40175
Gm40174 3 147990699 to 147992264 1565 + lncRNA gene predicted gene, 40174
D3Mit200 3 148031299 to 148031429 130 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 200
Alcp3 3 148031299 to 148031429 130 QTL alcohol preference locus 3, male specific
Gm40176 3 148081348 to 148086769 5421 + lncRNA gene predicted gene, 40176
Gm43574 3 148130244 to 148141598 11354 + unclassified non-coding RNA gene predicted gene 43574
D3Mit44 3 148143725 to 148143867 142 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 44
D3Mit45 3 148143739 to 148143886 147 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 45
Tbbr1 3 148143739 to 148143886 147 QTL Trypanosoma brucei brucei response 1
Gm29836 3 148337913 to 148342128 4215 + lncRNA gene predicted gene, 29836
Gm23131 3 148354087 to 148354218 131 - snoRNA gene predicted gene, 23131
Gm43576 3 148454941 to 148455811 870 + unclassified gene predicted gene 43576
4930408K12Rik 3 148508187 to 148509030 843 unclassified gene RIKEN cDNA 4930408K12 gene
Gm38068 3 148569064 to 148569603 539 + unclassified gene predicted gene, 38068
Gm43575 3 148653060 to 148653575 515 + pseudogene predicted gene 43575
D3Mit147 3 148745409 to 148745542 133 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 147
Hrtfm8 3 148745409 to 152886674 4141265 QTL heart failure modifier 8
D3Dcr17 3 148745414 to 148745529 115 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 17
Adgrl2 3 148815586 to 148988730 173144 - protein coding gene adhesion G protein-coupled receptor L2
Cpgi13927 3 148817422 to 148817975 553 CpG island CpG island 13927
Cpgi13928 3 148819616 to 148819949 333 CpG island CpG island 13928
Tssr36072 3 148819828 to 148819849 21 - TSS region transcription start site region 36072
Tssr36073 3 148861002 to 148861007 5 - TSS region transcription start site region 36073
Cpgi13929 3 148882804 to 148883092 288 CpG island CpG island 13929
Tssr36074 3 148917657 to 148917660 3 - TSS region transcription start site region 36074
Tssr36075 3 148927955 to 148927957 2 - TSS region transcription start site region 36075
6720422M22Rik 3 148930834 to 148933779 2945 lncRNA gene RIKEN cDNA 6720422M22 gene
Tssr36076 3 148948905 to 148948917 12 - TSS region transcription start site region 36076
Cpgi13930 3 148987253 to 148990913 3660 CpG island CpG island 13930
Tssr36077 3 148989094 to 148989097 3 - TSS region transcription start site region 36077
Tssr36078 3 148989102 to 148989107 5 - TSS region transcription start site region 36078
Gm43573 3 148989152 to 149004031 14879 + antisense lncRNA gene predicted gene 43573
Tssr36079 3 148989348 to 148989351 3 - TSS region transcription start site region 36079
Tssr36080 3 148989378 to 148989389 11 - TSS region transcription start site region 36080
Tssr36081 3 148989405 to 148989412 7 - TSS region transcription start site region 36081
Tssr36082 3 148989443 to 148989496 53 - TSS region transcription start site region 36082
Tssr36083 3 148989513 to 148989522 9 - TSS region transcription start site region 36083
Tssr36084 3 148989532 to 148989553 21 - TSS region transcription start site region 36084
Tssr36085 3 148989556 to 148989570 14 - TSS region transcription start site region 36085
Tssr36086 3 148989712 to 148989751 39 - TSS region transcription start site region 36086
Tssr36087 3 148989986 to 148990044 58 - TSS region transcription start site region 36087
Tssr36088 3 148990100 to 148990123 23 - TSS region transcription start site region 36088
Tssr36089 3 148990519 to 148990561 42 - TSS region transcription start site region 36089
Tssr36090 3 148990569 to 148990593 24 - TSS region transcription start site region 36090
Gm30827 3 148996762 to 149011815 15053 + lncRNA gene predicted gene, 30827
Gm43572 3 149005496 to 149007443 1947 + unclassified non-coding RNA gene predicted gene 43572
Gm25127 3 149028932 to 149029038 106 + snRNA gene predicted gene, 25127
Tssr36091 3 149077089 to 149077100 11 - TSS region transcription start site region 36091
Tssr36092 3 149077114 to 149077128 14 - TSS region transcription start site region 36092
Tssr36093 3 149077151 to 149077160 9 - TSS region transcription start site region 36093
Tssr36094 3 149077179 to 149077193 14 - TSS region transcription start site region 36094
Tssr36095 3 149077236 to 149077266 30 - TSS region transcription start site region 36095
Tssr36096 3 149077341 to 149077363 22 - TSS region transcription start site region 36096
Gm30575 3 149082268 to 149096302 14034 + lncRNA gene predicted gene, 30575
Gm42647 3 149210271 to 149210729 458 + pseudogene predicted gene 42647
Tssr36097 3 149219424 to 149219433 9 - TSS region transcription start site region 36097
Gm10287 3 149221687 to 149225745 4058 - lincRNA gene predicted gene 10287
Cpgi13931 3 149225808 to 149225984 176 CpG island CpG island 13931
D3Dcr18 3 149269724 to 149269831 107 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 18