Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:145954134-146844217

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153 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccs3 3 132048775 to 146311914 14263139 QTL colon cancer susceptibility 3
Tssr32318 3 145962672 to 145962678 6 + TSS region transcription start site region 32318
Cpgi13910 3 145963430 to 145963585 155 CpG island CpG island 13910
Gm35352 3 145983052 to 145987454 4402 - lncRNA gene predicted gene, 35352
Cpgi13911 3 145987355 to 145989238 1883 CpG island CpG island 13911
Tssr32319 3 145987835 to 145987901 66 + TSS region transcription start site region 32319
Syde2 3 145987870 to 146021720 33850 + protein coding gene synapse defective 1, Rho GTPase, homolog 2 (C. elegans)
Tssr32320 3 145988645 to 145988659 14 + TSS region transcription start site region 32320
Tssr32321 3 145988670 to 145988683 13 + TSS region transcription start site region 32321
Tssr1083 3 145988686 to 145988695 9 + TSS region transcription start site region 1083
Gm40166 3 146004086 to 146030765 26679 - lncRNA gene predicted gene, 40166
D3Mit260 3 146008001 to 146008206 205 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 260
Tssr32322 3 146012079 to 146012084 5 + TSS region transcription start site region 32322
Gm35409 3 146038445 to 146039840 1395 + lincRNA gene predicted gene, 35409
Wdr63 3 146040526 to 146108108 67582 - protein coding gene WD repeat domain 63
Tssr36027 3 146107989 to 146108003 14 - TSS region transcription start site region 36027
Tssr36028 3 146108009 to 146108033 24 - TSS region transcription start site region 36028
Tssr36029 3 146108047 to 146108091 44 - TSS region transcription start site region 36029
Gm25627 3 146116102 to 146116254 152 - snRNA gene predicted gene, 25627
Cpgi13912 3 146117108 to 146117919 811 CpG island CpG island 13912
Mcoln3 3 146117450 to 146141806 24356 + protein coding gene mucolipin 3
Tssr32323 3 146117451 to 146117462 11 + TSS region transcription start site region 32323
Tssr32324 3 146117468 to 146117521 53 + TSS region transcription start site region 32324
Tssr32325 3 146117527 to 146117540 13 + TSS region transcription start site region 32325
Tssr32326 3 146117541 to 146117544 3 + TSS region transcription start site region 32326
Tssr32327 3 146117701 to 146117718 17 + TSS region transcription start site region 32327
Tssr32328 3 146120755 to 146120761 6 + TSS region transcription start site region 32328
Tssr32329 3 146121655 to 146121683 28 + TSS region transcription start site region 32329
Tssr32330 3 146121695 to 146121715 20 + TSS region transcription start site region 32330
Tssr32331 3 146122229 to 146122234 5 + TSS region transcription start site region 32331
Tssr32332 3 146123360 to 146123368 8 + TSS region transcription start site region 32332
Tssr36030 3 146149665 to 146149689 24 - TSS region transcription start site region 36030
Cpgi13913 3 146149762 to 146150498 736 CpG island CpG island 13913
Tssr32333 3 146149822 to 146149829 7 + TSS region transcription start site region 32333
Tssr32334 3 146149829 to 146149843 14 + TSS region transcription start site region 32334
Mcoln2 3 146149833 to 146195513 45680 + protein coding gene mucolipin 2
Tssr32335 3 146149858 to 146149868 10 + TSS region transcription start site region 32335
Tssr32336 3 146150228 to 146150249 21 + TSS region transcription start site region 32336
Tssr32337 3 146150256 to 146150285 29 + TSS region transcription start site region 32337
Tssr36031 3 146153873 to 146153922 49 - TSS region transcription start site region 36031
Tssr32338 3 146182964 to 146182977 13 + TSS region transcription start site region 32338
Tssr32339 3 146182981 to 146183004 23 + TSS region transcription start site region 32339
Tssr32340 3 146186283 to 146186290 7 + TSS region transcription start site region 32340
Cpgi13914 3 146220567 to 146221629 1062 CpG island CpG island 13914
Tssr32341 3 146220935 to 146220950 15 + TSS region transcription start site region 32341
Tssr32342 3 146220955 to 146221009 54 + TSS region transcription start site region 32342
Lpar3 3 146220963 to 146286186 65223 + protein coding gene lysophosphatidic acid receptor 3
Tssr1084 3 146221020 to 146221038 18 + TSS region transcription start site region 1084
Cpgi13915 3 146284666 to 146285049 383 CpG island CpG island 13915
D3Mit292 3 146311796 to 146311914 118 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 292
Gm43334 3 146324420 to 146325737 1317 + unclassified gene predicted gene 43334
Tssr32343 3 146325280 to 146325282 2 + TSS region transcription start site region 32343
D3Mit259 3 146337217 to 146337306 89 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 259
D3Mit259.1 3 146337399 to 146337511 112 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 259.1
Cpgi13916 3 146345285 to 146345514 229 CpG island CpG island 13916
Gm40167 3 146346434 to 146351214 4780 + lncRNA gene predicted gene, 40167
Gm10636 3 146367153 to 146378944 11791 - lincRNA gene predicted gene 10636
Tssr36032 3 146378942 to 146378946 4 - TSS region transcription start site region 36032
Gm22078 3 146387742 to 146387844 102 - snRNA gene predicted gene, 22078
Cpgi13917 3 146392918 to 146393173 255 CpG island CpG island 13917
Gm22901 3 146399134 to 146399217 83 - miRNA gene predicted gene, 22901
Cpgi13918 3 146404151 to 146405416 1265 CpG island CpG island 13918
Tssr32344 3 146404631 to 146404738 107 + TSS region transcription start site region 32344
Ssx2ip 3 146404642 to 146440144 35502 + protein coding gene synovial sarcoma, X 2 interacting protein
Tssr32345 3 146404815 to 146404833 18 + TSS region transcription start site region 32345
Tssr32346 3 146404844 to 146404877 33 + TSS region transcription start site region 32346
Tssr1085 3 146404954 to 146404966 12 + TSS region transcription start site region 1085
Tssr32347 3 146405008 to 146405030 22 + TSS region transcription start site region 32347
Tssr36033 3 146405794 to 146405828 34 - TSS region transcription start site region 36033
Cpgi13919 3 146450329 to 146450976 647 CpG island CpG island 13919
Ctbs 3 146450467 to 146465849 15382 + protein coding gene chitobiase
Tssr32348 3 146450467 to 146450503 36 + TSS region transcription start site region 32348
Tssr32349 3 146450518 to 146450536 18 + TSS region transcription start site region 32349
Tssr32350 3 146451623 to 146451628 5 + TSS region transcription start site region 32350
Spata1 3 146457196 to 146499753 42557 - protein coding gene spermatogenesis associated 1
Tssr36034 3 146477376 to 146477381 5 - TSS region transcription start site region 36034
Tssr36035 3 146495128 to 146495139 11 - TSS region transcription start site region 36035
Cpgi13920 3 146499337 to 146500523 1186 CpG island CpG island 13920
Tssr32351 3 146499705 to 146499764 59 + TSS region transcription start site region 32351
Tssr36036 3 146499721 to 146499803 82 - TSS region transcription start site region 36036
Tssr36037 3 146499807 to 146499818 11 - TSS region transcription start site region 36037
Tssr32352 3 146499828 to 146499843 15 + TSS region transcription start site region 32352
Gng5 3 146499836 to 146505543 5707 + protein coding gene guanine nucleotide binding protein (G protein), gamma 5
Tssr32353 3 146499850 to 146499886 36 + TSS region transcription start site region 32353
Tssr32354 3 146500071 to 146500092 21 + TSS region transcription start site region 32354
Tssr36038 3 146500088 to 146500122 34 - TSS region transcription start site region 36038
Tssr32355 3 146500131 to 146500134 3 + TSS region transcription start site region 32355
Tssr32356 3 146500161 to 146500185 24 + TSS region transcription start site region 32356
Tssr32357 3 146500189 to 146500211 22 + TSS region transcription start site region 32357
Rpf1 3 146506340 to 146521437 15097 - protein coding gene ribosome production factor 1 homolog
Cpgi13921 3 146520696 to 146521564 868 CpG island CpG island 13921
Tssr32358 3 146521156 to 146521183 27 + TSS region transcription start site region 32358
Tssr36039 3 146521396 to 146521430 34 - TSS region transcription start site region 36039
Tssr32359 3 146549199 to 146549204 5 + TSS region transcription start site region 32359
Gm36259 3 146562878 to 146563269 391 - pseudogene predicted gene, 36259
Tssr32360 3 146570392 to 146570424 32 + TSS region transcription start site region 32360
Tssr36040 3 146571780 to 146571803 23 - TSS region transcription start site region 36040
Tssr36041 3 146571882 to 146571886 4 - TSS region transcription start site region 36041
Dnase2b 3 146580985 to 146615596 34611 - protein coding gene deoxyribonuclease II beta
Tssr36042 3 146586381 to 146586384 3 - TSS region transcription start site region 36042
Cpgi13922 3 146586756 to 146586952 196 CpG island CpG island 13922
Tssr36043 3 146596493 to 146596516 23 - TSS region transcription start site region 36043
Tssr36044 3 146596518 to 146596533 15 - TSS region transcription start site region 36044
Tssr36045 3 146596571 to 146596582 11 - TSS region transcription start site region 36045
Tssr36046 3 146596588 to 146596611 23 - TSS region transcription start site region 36046
Tssr32361 3 146597135 to 146597155 20 + TSS region transcription start site region 32361
Uox 3 146597149 to 146631483 34334 + protein coding gene urate oxidase
Tssr32362 3 146598983 to 146598989 6 + TSS region transcription start site region 32362
Tssr32363 3 146602298 to 146602311 13 + TSS region transcription start site region 32363
Tssr32364 3 146602388 to 146602398 10 + TSS region transcription start site region 32364
Tssr32365 3 146602497 to 146602512 15 + TSS region transcription start site region 32365
Tssr32366 3 146602637 to 146602672 35 + TSS region transcription start site region 32366
Tssr36047 3 146615587 to 146615604 17 - TSS region transcription start site region 36047
Tssr36048 3 146615626 to 146615631 5 - TSS region transcription start site region 36048
Tssr32367 3 146618664 to 146618675 11 + TSS region transcription start site region 32367
Tssr32368 3 146630633 to 146630645 12 + TSS region transcription start site region 32368
Gm16325 3 146641932 to 146651715 9783 + antisense lncRNA gene predicted gene 16325
4930503B20Rik 3 146645193 to 146651317 6124 - protein coding gene RIKEN cDNA 4930503B20 gene
Samd13 3 146645195 to 146685592 40397 - protein coding gene sterile alpha motif domain containing 13
Tssr36049 3 146648298 to 146648312 14 - TSS region transcription start site region 36049
Tssr36050 3 146651291 to 146651298 7 - TSS region transcription start site region 36050
Tssr36051 3 146651304 to 146651327 23 - TSS region transcription start site region 36051
Tssr1086 3 146651327 to 146651332 5 - TSS region transcription start site region 1086
Tssr1087 3 146651334 to 146651339 5 - TSS region transcription start site region 1087
Tssr1088 3 146651361 to 146651373 12 - TSS region transcription start site region 1088
Gm40169 3 146661120 to 146664467 3347 + lncRNA gene predicted gene, 40169
Tssr36052 3 146683262 to 146683266 4 - TSS region transcription start site region 36052
Cpgi13923 3 146684922 to 146685628 706 CpG island CpG island 13923
Gm36521 3 146685051 to 146688307 3256 + lncRNA gene predicted gene, 36521
Gm9480 3 146696219 to 146696834 615 + pseudogene predicted gene 9480
Del(3Lphn2-Prkacb)1Hgc 3 146729579 to 148988730 2259151 chromosomal deletion deletion, Chr3, Human Genome Center 1
Prkacb 3 146729579 to 146812946 83367 - protein coding gene protein kinase, cAMP dependent, catalytic, beta
Tssr36053 3 146731248 to 146731258 10 - TSS region transcription start site region 36053
Tssr36054 3 146748022 to 146748055 33 - TSS region transcription start site region 36054
Tssr36055 3 146769955 to 146770019 64 - TSS region transcription start site region 36055
Tssr36056 3 146770025 to 146770089 64 - TSS region transcription start site region 36056
Tssr36057 3 146770132 to 146770146 14 - TSS region transcription start site region 36057
Tssr36058 3 146770218 to 146770251 33 - TSS region transcription start site region 36058
Tssr36059 3 146770447 to 146770456 9 - TSS region transcription start site region 36059
Tssr36060 3 146770547 to 146770566 19 - TSS region transcription start site region 36060
Tssr36061 3 146770576 to 146770602 26 - TSS region transcription start site region 36061
Tssr36062 3 146770603 to 146770664 61 - TSS region transcription start site region 36062
Tssr36063 3 146771348 to 146771351 3 - TSS region transcription start site region 36063
Tssr36064 3 146781213 to 146781251 38 - TSS region transcription start site region 36064
Tssr36065 3 146781351 to 146781431 80 - TSS region transcription start site region 36065
Gm19104 3 146803216 to 146803811 595 + pseudogene predicted gene, 19104
Cpgi13924 3 146812307 to 146813523 1216 CpG island CpG island 13924
Tssr36066 3 146812871 to 146812920 49 - TSS region transcription start site region 36066
Tssr36067 3 146812925 to 146812946 21 - TSS region transcription start site region 36067
Tssr36068 3 146812951 to 146812983 32 - TSS region transcription start site region 36068
Tssr36069 3 146812988 to 146813013 25 - TSS region transcription start site region 36069
Gm10288 3 146838811 to 146839347 536 - pseudogene predicted gene 10288
Tssr36070 3 146839365 to 146839367 2 - TSS region transcription start site region 36070