Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:145028779-146488784

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162 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccs3 3 132048775 to 146311914 14263139 QTL colon cancer susceptibility 3
Clca1 3 145004537 to 145032776 28239 - protein coding gene chloride channel accessory 1
Tssr36014 3 145032765 to 145032781 16 - TSS region transcription start site region 36014
Tssr36015 3 145032869 to 145032898 29 - TSS region transcription start site region 36015
Tssr36016 3 145032957 to 145032969 12 - TSS region transcription start site region 36016
Clca2 3 145070263 to 145099443 29180 - protein coding gene chloride channel accessory 2
Tssr32281 3 145096843 to 145096857 14 + TSS region transcription start site region 32281
Tssr36017 3 145099024 to 145099075 51 - TSS region transcription start site region 36017
Gm40163 3 145116822 to 145118392 1570 - lncRNA gene predicted gene, 40163
Cpgi13902 3 145118323 to 145119194 871 CpG island CpG island 13902
Tssr32282 3 145118564 to 145118622 58 + TSS region transcription start site region 32282
Odf2l 3 145118588 to 145153915 35327 + protein coding gene outer dense fiber of sperm tails 2-like
Tssr32283 3 145118883 to 145118934 51 + TSS region transcription start site region 32283
Tssr1077 3 145160154 to 145160157 3 + TSS region transcription start site region 1077
Tssr36018 3 145195816 to 145195817 1 - TSS region transcription start site region 36018
Col24a1 3 145292472 to 145552011 259539 + protein coding gene collagen, type XXIV, alpha 1
Tssr32284 3 145292509 to 145292536 27 + TSS region transcription start site region 32284
Tssr32285 3 145292537 to 145292569 32 + TSS region transcription start site region 32285
Tssr32286 3 145292697 to 145292714 17 + TSS region transcription start site region 32286
Tssr32287 3 145292716 to 145292776 60 + TSS region transcription start site region 32287
Gm35133 3 145388811 to 145394270 5459 - lncRNA gene predicted gene, 35133
9530034A14Rik 3 145416012 to 145418044 2032 - antisense lncRNA gene RIKEN cDNA 9530034A14 gene
D530037P16Rik 3 145419326 to 145420352 1026 + sense overlapping lncRNA gene RIKEN cDNA D530037P16 gene
Cpgi13903 3 145576010 to 145576688 678 CpG island CpG island 13903
Tssr32288 3 145576154 to 145576167 13 + TSS region transcription start site region 32288
Tssr32289 3 145576196 to 145576266 70 + TSS region transcription start site region 32289
Znhit6 3 145576205 to 145604795 28590 + protein coding gene zinc finger, HIT type 6
Tssr32290 3 145576454 to 145576492 38 + TSS region transcription start site region 32290
Gm40164 3 145629457 to 145633187 3730 - lncRNA gene predicted gene, 40164
Ccn1 3 145646976 to 145649981 3005 - protein coding gene cellular communication network factor 1
Cpgi13904 3 145647363 to 145647736 373 CpG island CpG island 13904
Tssr36019 3 145648710 to 145648728 18 - TSS region transcription start site region 36019
Cpgi13905 3 145649207 to 145650143 936 CpG island CpG island 13905
Tssr36020 3 145649266 to 145649280 14 - TSS region transcription start site region 36020
Tssr36021 3 145649704 to 145649709 5 - TSS region transcription start site region 36021
Tssr36022 3 145649970 to 145649992 22 - TSS region transcription start site region 36022
Gm17501 3 145650312 to 145677580 27268 + lincRNA gene predicted gene, 17501
D3Mit113.2 3 145650893 to 145651060 167 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 113.2
D3Mit113 3 145651045 to 145651180 135 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 113
D3Mit113.1 3 145651195 to 145651337 142 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 113.1
Tssr36023 3 145651441 to 145651452 11 - TSS region transcription start site region 36023
Tssr32291 3 145652089 to 145652109 20 + TSS region transcription start site region 32291
Tssr32292 3 145652361 to 145652377 16 + TSS region transcription start site region 32292
Tssr32293 3 145652407 to 145652456 49 + TSS region transcription start site region 32293
Cpgi13906 3 145652767 to 145653832 1065 CpG island CpG island 13906
Gm43408 3 145738727 to 145739166 439 - pseudogene predicted gene 43408
Tssr32294 3 145757259 to 145757267 8 + TSS region transcription start site region 32294
Cpgi13907 3 145758395 to 145759599 1204 CpG island CpG island 13907
Tssr32295 3 145758674 to 145758685 11 + TSS region transcription start site region 32295
Tssr32296 3 145758689 to 145758694 5 + TSS region transcription start site region 32296
Ddah1 3 145758692 to 145894277 135585 + protein coding gene dimethylarginine dimethylaminohydrolase 1
Tssr1078 3 145758698 to 145758701 3 + TSS region transcription start site region 1078
Tssr32297 3 145758718 to 145758738 20 + TSS region transcription start site region 32297
Tssr32298 3 145758750 to 145758764 14 + TSS region transcription start site region 32298
Tssr1079 3 145758779 to 145758784 5 + TSS region transcription start site region 1079
Tssr1080 3 145758787 to 145758794 7 + TSS region transcription start site region 1080
Tssr1081 3 145758795 to 145758802 7 + TSS region transcription start site region 1081
Tssr1082 3 145758824 to 145758840 16 + TSS region transcription start site region 1082
Tssr32299 3 145758909 to 145758951 42 + TSS region transcription start site region 32299
Tssr32300 3 145758963 to 145758984 21 + TSS region transcription start site region 32300
Tssr36024 3 145759587 to 145759592 5 - TSS region transcription start site region 36024
Tssr32301 3 145810447 to 145810465 18 + TSS region transcription start site region 32301
Tssr32302 3 145810473 to 145810494 21 + TSS region transcription start site region 32302
Tssr32303 3 145827699 to 145827731 32 + TSS region transcription start site region 32303
Gm35187 3 145876198 to 145890628 14430 - lncRNA gene predicted gene, 35187
Tssr32304 3 145878985 to 145878996 11 + TSS region transcription start site region 32304
Rpl36a-ps2 3 145879020 to 145879340 320 + pseudogene ribosomal protein L36A, pseudogene 2
Tssr32305 3 145891498 to 145891514 16 + TSS region transcription start site region 32305
Tssr32306 3 145891601 to 145891615 14 + TSS region transcription start site region 32306
Tssr32307 3 145891646 to 145891658 12 + TSS region transcription start site region 32307
Tssr32308 3 145891993 to 145892009 16 + TSS region transcription start site region 32308
Tssr32309 3 145892015 to 145892026 11 + TSS region transcription start site region 32309
Tssr32310 3 145892772 to 145892777 5 + TSS region transcription start site region 32310
Tssr32311 3 145893956 to 145893966 10 + TSS region transcription start site region 32311
Cpgi13908 3 145923877 to 145925056 1179 CpG island CpG island 13908
Bcl10 3 145924262 to 145934366 10104 + protein coding gene B cell leukemia/lymphoma 10
Tssr32312 3 145924280 to 145924297 17 + TSS region transcription start site region 32312
Tssr32313 3 145924303 to 145924378 75 + TSS region transcription start site region 32313
Tssr32314 3 145924380 to 145924391 11 + TSS region transcription start site region 32314
Tssr32315 3 145924405 to 145924412 7 + TSS region transcription start site region 32315
Tssr32316 3 145924438 to 145924449 11 + TSS region transcription start site region 32316
Tssr36025 3 145924873 to 145924895 22 - TSS region transcription start site region 36025
Tssr36026 3 145924909 to 145924923 14 - TSS region transcription start site region 36026
Cpgi13909 3 145937884 to 145938995 1111 CpG island CpG island 13909
Tssr32317 3 145938004 to 145938063 59 + TSS region transcription start site region 32317
2410004B18Rik 3 145938014 to 145944829 6815 + protein coding gene RIKEN cDNA 2410004B18 gene
D3Mit85 3 145946978 to 145947193 215 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 85
Tssr32318 3 145962672 to 145962678 6 + TSS region transcription start site region 32318
Cpgi13910 3 145963430 to 145963585 155 CpG island CpG island 13910
Gm35352 3 145983052 to 145987454 4402 - lncRNA gene predicted gene, 35352
Cpgi13911 3 145987355 to 145989238 1883 CpG island CpG island 13911
Tssr32319 3 145987835 to 145987901 66 + TSS region transcription start site region 32319
Syde2 3 145987870 to 146021720 33850 + protein coding gene synapse defective 1, Rho GTPase, homolog 2 (C. elegans)
Tssr32320 3 145988645 to 145988659 14 + TSS region transcription start site region 32320
Tssr32321 3 145988670 to 145988683 13 + TSS region transcription start site region 32321
Tssr1083 3 145988686 to 145988695 9 + TSS region transcription start site region 1083
Gm40166 3 146004086 to 146030765 26679 - lncRNA gene predicted gene, 40166
D3Mit260 3 146008001 to 146008206 205 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 260
Tssr32322 3 146012079 to 146012084 5 + TSS region transcription start site region 32322
Gm35409 3 146038445 to 146039840 1395 + lincRNA gene predicted gene, 35409
Wdr63 3 146040526 to 146108108 67582 - protein coding gene WD repeat domain 63
Tssr36027 3 146107989 to 146108003 14 - TSS region transcription start site region 36027
Tssr36028 3 146108009 to 146108033 24 - TSS region transcription start site region 36028
Tssr36029 3 146108047 to 146108091 44 - TSS region transcription start site region 36029
Gm25627 3 146116102 to 146116254 152 - snRNA gene predicted gene, 25627
Cpgi13912 3 146117108 to 146117919 811 CpG island CpG island 13912
Mcoln3 3 146117450 to 146141806 24356 + protein coding gene mucolipin 3
Tssr32323 3 146117451 to 146117462 11 + TSS region transcription start site region 32323
Tssr32324 3 146117468 to 146117521 53 + TSS region transcription start site region 32324
Tssr32325 3 146117527 to 146117540 13 + TSS region transcription start site region 32325
Tssr32326 3 146117541 to 146117544 3 + TSS region transcription start site region 32326
Tssr32327 3 146117701 to 146117718 17 + TSS region transcription start site region 32327
Tssr32328 3 146120755 to 146120761 6 + TSS region transcription start site region 32328
Tssr32329 3 146121655 to 146121683 28 + TSS region transcription start site region 32329
Tssr32330 3 146121695 to 146121715 20 + TSS region transcription start site region 32330
Tssr32331 3 146122229 to 146122234 5 + TSS region transcription start site region 32331
Tssr32332 3 146123360 to 146123368 8 + TSS region transcription start site region 32332
Tssr36030 3 146149665 to 146149689 24 - TSS region transcription start site region 36030
Cpgi13913 3 146149762 to 146150498 736 CpG island CpG island 13913
Tssr32333 3 146149822 to 146149829 7 + TSS region transcription start site region 32333
Tssr32334 3 146149829 to 146149843 14 + TSS region transcription start site region 32334
Mcoln2 3 146149833 to 146195513 45680 + protein coding gene mucolipin 2
Tssr32335 3 146149858 to 146149868 10 + TSS region transcription start site region 32335
Tssr32336 3 146150228 to 146150249 21 + TSS region transcription start site region 32336
Tssr32337 3 146150256 to 146150285 29 + TSS region transcription start site region 32337
Tssr36031 3 146153873 to 146153922 49 - TSS region transcription start site region 36031
Tssr32338 3 146182964 to 146182977 13 + TSS region transcription start site region 32338
Tssr32339 3 146182981 to 146183004 23 + TSS region transcription start site region 32339
Tssr32340 3 146186283 to 146186290 7 + TSS region transcription start site region 32340
Cpgi13914 3 146220567 to 146221629 1062 CpG island CpG island 13914
Tssr32341 3 146220935 to 146220950 15 + TSS region transcription start site region 32341
Tssr32342 3 146220955 to 146221009 54 + TSS region transcription start site region 32342
Lpar3 3 146220963 to 146286186 65223 + protein coding gene lysophosphatidic acid receptor 3
Tssr1084 3 146221020 to 146221038 18 + TSS region transcription start site region 1084
Cpgi13915 3 146284666 to 146285049 383 CpG island CpG island 13915
D3Mit292 3 146311796 to 146311914 118 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 292
Gm43334 3 146324420 to 146325737 1317 + unclassified gene predicted gene 43334
Tssr32343 3 146325280 to 146325282 2 + TSS region transcription start site region 32343
D3Mit259 3 146337217 to 146337306 89 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 259
D3Mit259.1 3 146337399 to 146337511 112 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 259.1
Cpgi13916 3 146345285 to 146345514 229 CpG island CpG island 13916
Gm40167 3 146346434 to 146351214 4780 + lncRNA gene predicted gene, 40167
Gm10636 3 146367153 to 146378944 11791 - lincRNA gene predicted gene 10636
Tssr36032 3 146378942 to 146378946 4 - TSS region transcription start site region 36032
Gm22078 3 146387742 to 146387844 102 - snRNA gene predicted gene, 22078
Cpgi13917 3 146392918 to 146393173 255 CpG island CpG island 13917
Gm22901 3 146399134 to 146399217 83 - miRNA gene predicted gene, 22901
Cpgi13918 3 146404151 to 146405416 1265 CpG island CpG island 13918
Tssr32344 3 146404631 to 146404738 107 + TSS region transcription start site region 32344
Ssx2ip 3 146404642 to 146440144 35502 + protein coding gene synovial sarcoma, X 2 interacting protein
Tssr32345 3 146404815 to 146404833 18 + TSS region transcription start site region 32345
Tssr32346 3 146404844 to 146404877 33 + TSS region transcription start site region 32346
Tssr1085 3 146404954 to 146404966 12 + TSS region transcription start site region 1085
Tssr32347 3 146405008 to 146405030 22 + TSS region transcription start site region 32347
Tssr36033 3 146405794 to 146405828 34 - TSS region transcription start site region 36033
Cpgi13919 3 146450329 to 146450976 647 CpG island CpG island 13919
Tssr32348 3 146450467 to 146450503 36 + TSS region transcription start site region 32348
Ctbs 3 146450467 to 146465849 15382 + protein coding gene chitobiase
Tssr32349 3 146450518 to 146450536 18 + TSS region transcription start site region 32349
Tssr32350 3 146451623 to 146451628 5 + TSS region transcription start site region 32350
Spata1 3 146457196 to 146499753 42557 - protein coding gene spermatogenesis associated 1
Tssr36034 3 146477376 to 146477381 5 - TSS region transcription start site region 36034