Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:144903811-145879270

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Clca4b 3 144910921 to 144932529 21608 - protein coding gene chloride channel accessory 4B
Tssr36006 3 144932523 to 144932536 13 - TSS region transcription start site region 36006
Gm16233 3 144947561 to 144954878 7317 + antisense lncRNA gene predicted gene 16233
Tssr32279 3 144947778 to 144947816 38 + TSS region transcription start site region 32279
Clca4a 3 144952486 to 144975045 22559 - protein coding gene chloride channel accessory 4A
Gm35066 3 144972124 to 144982560 10436 + lncRNA gene predicted gene, 35066
Tssr36007 3 144975040 to 144975046 6 - TSS region transcription start site region 36007
Clca1 3 145004537 to 145032776 28239 - protein coding gene chloride channel accessory 1
Tssr36008 3 145009821 to 145009838 17 - TSS region transcription start site region 36008
Tssr36009 3 145009886 to 145009897 11 - TSS region transcription start site region 36009
Tssr36010 3 145018682 to 145018696 14 - TSS region transcription start site region 36010
Tssr36011 3 145018729 to 145018744 15 - TSS region transcription start site region 36011
Tssr36012 3 145018942 to 145018969 27 - TSS region transcription start site region 36012
Tssr36013 3 145024580 to 145024596 16 - TSS region transcription start site region 36013
Tssr32280 3 145027353 to 145027379 26 + TSS region transcription start site region 32280
Tssr36014 3 145032765 to 145032781 16 - TSS region transcription start site region 36014
Tssr36015 3 145032869 to 145032898 29 - TSS region transcription start site region 36015
Tssr36016 3 145032957 to 145032969 12 - TSS region transcription start site region 36016
Clca2 3 145070263 to 145099443 29180 - protein coding gene chloride channel accessory 2
Tssr32281 3 145096843 to 145096857 14 + TSS region transcription start site region 32281
Tssr36017 3 145099024 to 145099075 51 - TSS region transcription start site region 36017
Gm40163 3 145116822 to 145118392 1570 - lncRNA gene predicted gene, 40163
Cpgi13902 3 145118323 to 145119194 871 CpG island CpG island 13902
Tssr32282 3 145118564 to 145118622 58 + TSS region transcription start site region 32282
Odf2l 3 145118588 to 145153915 35327 + protein coding gene outer dense fiber of sperm tails 2-like
Tssr32283 3 145118883 to 145118934 51 + TSS region transcription start site region 32283
Tssr1077 3 145160154 to 145160157 3 + TSS region transcription start site region 1077
Tssr36018 3 145195816 to 145195817 1 - TSS region transcription start site region 36018
Col24a1 3 145292472 to 145552011 259539 + protein coding gene collagen, type XXIV, alpha 1
Tssr32284 3 145292509 to 145292536 27 + TSS region transcription start site region 32284
Tssr32285 3 145292537 to 145292569 32 + TSS region transcription start site region 32285
Tssr32286 3 145292697 to 145292714 17 + TSS region transcription start site region 32286
Tssr32287 3 145292716 to 145292776 60 + TSS region transcription start site region 32287
Gm35133 3 145388811 to 145394270 5459 - lncRNA gene predicted gene, 35133
9530034A14Rik 3 145416012 to 145418044 2032 - antisense lncRNA gene RIKEN cDNA 9530034A14 gene
D530037P16Rik 3 145419326 to 145420352 1026 + sense overlapping lncRNA gene RIKEN cDNA D530037P16 gene
Cpgi13903 3 145576010 to 145576688 678 CpG island CpG island 13903
Tssr32288 3 145576154 to 145576167 13 + TSS region transcription start site region 32288
Tssr32289 3 145576196 to 145576266 70 + TSS region transcription start site region 32289
Znhit6 3 145576205 to 145604795 28590 + protein coding gene zinc finger, HIT type 6
Tssr32290 3 145576454 to 145576492 38 + TSS region transcription start site region 32290
Gm40164 3 145629457 to 145633187 3730 - lncRNA gene predicted gene, 40164
Ccn1 3 145646976 to 145649981 3005 - protein coding gene cellular communication network factor 1
Cpgi13904 3 145647363 to 145647736 373 CpG island CpG island 13904
Tssr36019 3 145648710 to 145648728 18 - TSS region transcription start site region 36019
Cpgi13905 3 145649207 to 145650143 936 CpG island CpG island 13905
Tssr36020 3 145649266 to 145649280 14 - TSS region transcription start site region 36020
Tssr36021 3 145649704 to 145649709 5 - TSS region transcription start site region 36021
Tssr36022 3 145649970 to 145649992 22 - TSS region transcription start site region 36022
Gm17501 3 145650312 to 145677580 27268 + lincRNA gene predicted gene, 17501
D3Mit113.2 3 145650893 to 145651060 167 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 113.2
D3Mit113 3 145651045 to 145651180 135 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 113
D3Mit113.1 3 145651195 to 145651337 142 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 113.1
Tssr36023 3 145651441 to 145651452 11 - TSS region transcription start site region 36023
Tssr32291 3 145652089 to 145652109 20 + TSS region transcription start site region 32291
Tssr32292 3 145652361 to 145652377 16 + TSS region transcription start site region 32292
Tssr32293 3 145652407 to 145652456 49 + TSS region transcription start site region 32293
Cpgi13906 3 145652767 to 145653832 1065 CpG island CpG island 13906
Gm43408 3 145738727 to 145739166 439 - pseudogene predicted gene 43408
Tssr32294 3 145757259 to 145757267 8 + TSS region transcription start site region 32294
Cpgi13907 3 145758395 to 145759599 1204 CpG island CpG island 13907
Tssr32295 3 145758674 to 145758685 11 + TSS region transcription start site region 32295
Tssr32296 3 145758689 to 145758694 5 + TSS region transcription start site region 32296
Ddah1 3 145758692 to 145894277 135585 + protein coding gene dimethylarginine dimethylaminohydrolase 1
Tssr1078 3 145758698 to 145758701 3 + TSS region transcription start site region 1078
Tssr32297 3 145758718 to 145758738 20 + TSS region transcription start site region 32297
Tssr32298 3 145758750 to 145758764 14 + TSS region transcription start site region 32298
Tssr1079 3 145758779 to 145758784 5 + TSS region transcription start site region 1079
Tssr1080 3 145758787 to 145758794 7 + TSS region transcription start site region 1080
Tssr1081 3 145758795 to 145758802 7 + TSS region transcription start site region 1081
Tssr1082 3 145758824 to 145758840 16 + TSS region transcription start site region 1082
Tssr32299 3 145758909 to 145758951 42 + TSS region transcription start site region 32299
Tssr32300 3 145758963 to 145758984 21 + TSS region transcription start site region 32300
Tssr36024 3 145759587 to 145759592 5 - TSS region transcription start site region 36024
Tssr32301 3 145810447 to 145810465 18 + TSS region transcription start site region 32301
Tssr32302 3 145810473 to 145810494 21 + TSS region transcription start site region 32302
Tssr32303 3 145827699 to 145827731 32 + TSS region transcription start site region 32303
Gm35187 3 145876198 to 145890628 14430 - lncRNA gene predicted gene, 35187
Tssr32304 3 145878985 to 145878996 11 + TSS region transcription start site region 32304
Rpl36a-ps2 3 145879020 to 145879340 320 + pseudogene ribosomal protein L36A, pseudogene 2