Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:144618588-145653915

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110 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rpl9-ps8 3 144625403 to 144625964 561 - pseudogene ribosomal protein L9, pseudogene 8
Tssr1073 3 144653929 to 144653930 1 + TSS region transcription start site region 1073
Tssr32272 3 144677647 to 144677663 16 + TSS region transcription start site region 32272
Tssr32273 3 144677673 to 144677706 33 + TSS region transcription start site region 32273
Tssr32274 3 144677711 to 144677732 21 + TSS region transcription start site region 32274
Sh3glb1 3 144683678 to 144720335 36657 - protein coding gene SH3-domain GRB2-like B1 (endophilin)
Tssr32275 3 144689498 to 144689540 42 + TSS region transcription start site region 32275
Tssr35979 3 144689670 to 144689694 24 - TSS region transcription start site region 35979
Tssr35980 3 144691392 to 144691423 31 - TSS region transcription start site region 35980
Tssr35981 3 144691443 to 144691468 25 - TSS region transcription start site region 35981
Tssr32276 3 144691937 to 144691979 42 + TSS region transcription start site region 32276
Tssr35982 3 144691941 to 144691966 25 - TSS region transcription start site region 35982
Tssr35983 3 144692014 to 144692040 26 - TSS region transcription start site region 35983
Tssr35984 3 144692051 to 144692060 9 - TSS region transcription start site region 35984
Tssr35985 3 144692416 to 144692420 4 - TSS region transcription start site region 35985
Tssr32277 3 144697354 to 144697360 6 + TSS region transcription start site region 32277
Tssr35986 3 144700931 to 144700945 14 - TSS region transcription start site region 35986
Tssr35987 3 144706639 to 144706700 61 - TSS region transcription start site region 35987
Tssr35988 3 144710475 to 144710493 18 - TSS region transcription start site region 35988
Tssr35989 3 144710631 to 144710649 18 - TSS region transcription start site region 35989
Tssr35990 3 144712659 to 144712711 52 - TSS region transcription start site region 35990
Tssr35991 3 144712713 to 144712738 25 - TSS region transcription start site region 35991
Tssr35992 3 144714087 to 144714106 19 - TSS region transcription start site region 35992
Cpgi13901 3 144719224 to 144720714 1490 CpG island CpG island 13901
Tssr1074 3 144720004 to 144720033 29 - TSS region transcription start site region 1074
Tssr35993 3 144720068 to 144720208 140 - TSS region transcription start site region 35993
Tssr35994 3 144720216 to 144720233 17 - TSS region transcription start site region 35994
Tssr35995 3 144720276 to 144720307 31 - TSS region transcription start site region 35995
Tssr35996 3 144720315 to 144720336 21 - TSS region transcription start site region 35996
Tssr1075 3 144720358 to 144720365 7 - TSS region transcription start site region 1075
Tssr35997 3 144720369 to 144720384 15 - TSS region transcription start site region 35997
Tssr35998 3 144720387 to 144720395 8 - TSS region transcription start site region 35998
Tssr35999 3 144720402 to 144720416 14 - TSS region transcription start site region 35999
Tssr32278 3 144727791 to 144727809 18 + TSS region transcription start site region 32278
Gm9419 3 144727884 to 144728450 566 + pseudogene predicted gene 9419
Clca3a1 3 144729677 to 144760977 31300 - protein coding gene chloride channel accessory 3A1
Gm34866 3 144749482 to 144750087 605 + antisense lncRNA gene predicted gene, 34866
D3Mit161a 3 144758867 to 144758983 116 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 161a
Tssr36000 3 144760729 to 144760746 17 - TSS region transcription start site region 36000
Tssr1076 3 144760756 to 144760767 11 - TSS region transcription start site region 1076
Tssr36001 3 144760794 to 144760809 15 - TSS region transcription start site region 36001
Tssr36002 3 144760859 to 144760868 9 - TSS region transcription start site region 36002
Gm17743 3 144779012 to 144780686 1674 + pseudogene predicted gene, 17743
Clca3a2 3 144796559 to 144819494 22935 - protein coding gene chloride channel accessory 3A2
Gm43240 3 144808376 to 144813538 5162 + antisense lncRNA gene predicted gene 43240
D3Mit161b 3 144817611 to 144817737 126 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 161b
Clca3b 3 144822623 to 144849302 26679 - protein coding gene chloride channel accessory 3B
Tssr36003 3 144827347 to 144827389 42 - TSS region transcription start site region 36003
Gm16215 3 144847601 to 144848120 519 + pseudogene predicted gene 16215
Tssr36004 3 144849301 to 144849302 1 - TSS region transcription start site region 36004
Clca4c-ps 3 144879322 to 144896011 16689 - pseudogene chloride channel accessory 4C, pseudogene
Tssr36005 3 144889773 to 144889779 6 - TSS region transcription start site region 36005
Clca4b 3 144910921 to 144932529 21608 - protein coding gene chloride channel accessory 4B
Tssr36006 3 144932523 to 144932536 13 - TSS region transcription start site region 36006
Gm16233 3 144947561 to 144954878 7317 + antisense lncRNA gene predicted gene 16233
Tssr32279 3 144947778 to 144947816 38 + TSS region transcription start site region 32279
Clca4a 3 144952486 to 144975045 22559 - protein coding gene chloride channel accessory 4A
Gm35066 3 144972124 to 144982560 10436 + lncRNA gene predicted gene, 35066
Tssr36007 3 144975040 to 144975046 6 - TSS region transcription start site region 36007
Clca1 3 145004537 to 145032776 28239 - protein coding gene chloride channel accessory 1
Tssr36008 3 145009821 to 145009838 17 - TSS region transcription start site region 36008
Tssr36009 3 145009886 to 145009897 11 - TSS region transcription start site region 36009
Tssr36010 3 145018682 to 145018696 14 - TSS region transcription start site region 36010
Tssr36011 3 145018729 to 145018744 15 - TSS region transcription start site region 36011
Tssr36012 3 145018942 to 145018969 27 - TSS region transcription start site region 36012
Tssr36013 3 145024580 to 145024596 16 - TSS region transcription start site region 36013
Tssr32280 3 145027353 to 145027379 26 + TSS region transcription start site region 32280
Tssr36014 3 145032765 to 145032781 16 - TSS region transcription start site region 36014
Tssr36015 3 145032869 to 145032898 29 - TSS region transcription start site region 36015
Tssr36016 3 145032957 to 145032969 12 - TSS region transcription start site region 36016
Clca2 3 145070263 to 145099443 29180 - protein coding gene chloride channel accessory 2
Tssr32281 3 145096843 to 145096857 14 + TSS region transcription start site region 32281
Tssr36017 3 145099024 to 145099075 51 - TSS region transcription start site region 36017
Gm40163 3 145116822 to 145118392 1570 - lncRNA gene predicted gene, 40163
Cpgi13902 3 145118323 to 145119194 871 CpG island CpG island 13902
Tssr32282 3 145118564 to 145118622 58 + TSS region transcription start site region 32282
Odf2l 3 145118588 to 145153915 35327 + protein coding gene outer dense fiber of sperm tails 2-like
Tssr32283 3 145118883 to 145118934 51 + TSS region transcription start site region 32283
Tssr1077 3 145160154 to 145160157 3 + TSS region transcription start site region 1077
Tssr36018 3 145195816 to 145195817 1 - TSS region transcription start site region 36018
Col24a1 3 145292472 to 145552011 259539 + protein coding gene collagen, type XXIV, alpha 1
Tssr32284 3 145292509 to 145292536 27 + TSS region transcription start site region 32284
Tssr32285 3 145292537 to 145292569 32 + TSS region transcription start site region 32285
Tssr32286 3 145292697 to 145292714 17 + TSS region transcription start site region 32286
Tssr32287 3 145292716 to 145292776 60 + TSS region transcription start site region 32287
Gm35133 3 145388811 to 145394270 5459 - lncRNA gene predicted gene, 35133
9530034A14Rik 3 145416012 to 145418044 2032 - antisense lncRNA gene RIKEN cDNA 9530034A14 gene
D530037P16Rik 3 145419326 to 145420352 1026 + sense overlapping lncRNA gene RIKEN cDNA D530037P16 gene
Cpgi13903 3 145576010 to 145576688 678 CpG island CpG island 13903
Tssr32288 3 145576154 to 145576167 13 + TSS region transcription start site region 32288
Tssr32289 3 145576196 to 145576266 70 + TSS region transcription start site region 32289
Znhit6 3 145576205 to 145604795 28590 + protein coding gene zinc finger, HIT type 6
Tssr32290 3 145576454 to 145576492 38 + TSS region transcription start site region 32290
Gm40164 3 145629457 to 145633187 3730 - lncRNA gene predicted gene, 40164
Ccn1 3 145646976 to 145649981 3005 - protein coding gene cellular communication network factor 1
Cpgi13904 3 145647363 to 145647736 373 CpG island CpG island 13904
Tssr36019 3 145648710 to 145648728 18 - TSS region transcription start site region 36019
Cpgi13905 3 145649207 to 145650143 936 CpG island CpG island 13905
Tssr36020 3 145649266 to 145649280 14 - TSS region transcription start site region 36020
Tssr36021 3 145649704 to 145649709 5 - TSS region transcription start site region 36021
Tssr36022 3 145649970 to 145649992 22 - TSS region transcription start site region 36022
Gm17501 3 145650312 to 145677580 27268 + lincRNA gene predicted gene, 17501
D3Mit113.2 3 145650893 to 145651060 167 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 113.2
D3Mit113 3 145651045 to 145651180 135 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 113
D3Mit113.1 3 145651195 to 145651337 142 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 113.1
Tssr36023 3 145651441 to 145651452 11 - TSS region transcription start site region 36023
Tssr32291 3 145652089 to 145652109 20 + TSS region transcription start site region 32291
Tssr32292 3 145652361 to 145652377 16 + TSS region transcription start site region 32292
Tssr32293 3 145652407 to 145652456 49 + TSS region transcription start site region 32293
Cpgi13906 3 145652767 to 145653832 1065 CpG island CpG island 13906