Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:144390387-145050395

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi13898 3 144396572 to 144396791 219 CpG island CpG island 13898
Gm5857 3 144427180 to 144427672 492 - pseudogene predicted gene 5857
Hs2st1 3 144430008 to 144570216 140208 - protein coding gene heparan sulfate 2-O-sulfotransferase 1
Gm43707 3 144493986 to 144497172 3186 - sense intronic lncRNA gene predicted gene 43707
Gm43560 3 144523229 to 144524001 772 - sense intronic lncRNA gene predicted gene 43560
Gm46829 3 144540766 to 144555583 14817 - lncRNA gene predicted gene, 46829
Tssr35977 3 144555323 to 144555365 42 - TSS region transcription start site region 35977
Cpgi13899 3 144561646 to 144561849 203 CpG island CpG island 13899
Cpgi13900 3 144568887 to 144571029 2142 CpG island CpG island 13900
Tssr32262 3 144569982 to 144569989 7 + TSS region transcription start site region 32262
Tssr35978 3 144570136 to 144570227 91 - TSS region transcription start site region 35978
Tssr32263 3 144570279 to 144570284 5 + TSS region transcription start site region 32263
Tssr32264 3 144570304 to 144570309 5 + TSS region transcription start site region 32264
Tssr32265 3 144570372 to 144570383 11 + TSS region transcription start site region 32265
Tssr32266 3 144570396 to 144570407 11 + TSS region transcription start site region 32266
Tssr32267 3 144570409 to 144570490 81 + TSS region transcription start site region 32267
Selenof 3 144570427 to 144597677 27250 + protein coding gene selenoprotein F
Tssr32268 3 144570556 to 144570571 15 + TSS region transcription start site region 32268
Tssr32269 3 144570687 to 144570721 34 + TSS region transcription start site region 32269
Tssr32270 3 144577594 to 144577614 20 + TSS region transcription start site region 32270
Gm24406 3 144586825 to 144586952 127 - snoRNA gene predicted gene, 24406
9430014F16Rik 3 144590424 to 144591956 1532 unclassified gene RIKEN cDNA 9430014F16 gene
Tssr32271 3 144597045 to 144597098 53 + TSS region transcription start site region 32271
Rpl9-ps8 3 144625403 to 144625964 561 - pseudogene ribosomal protein L9, pseudogene 8
Tssr1073 3 144653929 to 144653930 1 + TSS region transcription start site region 1073
Tssr32272 3 144677647 to 144677663 16 + TSS region transcription start site region 32272
Tssr32273 3 144677673 to 144677706 33 + TSS region transcription start site region 32273
Tssr32274 3 144677711 to 144677732 21 + TSS region transcription start site region 32274
Sh3glb1 3 144683678 to 144720335 36657 - protein coding gene SH3-domain GRB2-like B1 (endophilin)
Tssr32275 3 144689498 to 144689540 42 + TSS region transcription start site region 32275
Tssr35979 3 144689670 to 144689694 24 - TSS region transcription start site region 35979
Tssr35980 3 144691392 to 144691423 31 - TSS region transcription start site region 35980
Tssr35981 3 144691443 to 144691468 25 - TSS region transcription start site region 35981
Tssr32276 3 144691937 to 144691979 42 + TSS region transcription start site region 32276
Tssr35982 3 144691941 to 144691966 25 - TSS region transcription start site region 35982
Tssr35983 3 144692014 to 144692040 26 - TSS region transcription start site region 35983
Tssr35984 3 144692051 to 144692060 9 - TSS region transcription start site region 35984
Tssr35985 3 144692416 to 144692420 4 - TSS region transcription start site region 35985
Tssr32277 3 144697354 to 144697360 6 + TSS region transcription start site region 32277
Tssr35986 3 144700931 to 144700945 14 - TSS region transcription start site region 35986
Tssr35987 3 144706639 to 144706700 61 - TSS region transcription start site region 35987
Tssr35988 3 144710475 to 144710493 18 - TSS region transcription start site region 35988
Tssr35989 3 144710631 to 144710649 18 - TSS region transcription start site region 35989
Tssr35990 3 144712659 to 144712711 52 - TSS region transcription start site region 35990
Tssr35991 3 144712713 to 144712738 25 - TSS region transcription start site region 35991
Tssr35992 3 144714087 to 144714106 19 - TSS region transcription start site region 35992
Cpgi13901 3 144719224 to 144720714 1490 CpG island CpG island 13901
Tssr1074 3 144720004 to 144720033 29 - TSS region transcription start site region 1074
Tssr35993 3 144720068 to 144720208 140 - TSS region transcription start site region 35993
Tssr35994 3 144720216 to 144720233 17 - TSS region transcription start site region 35994
Tssr35995 3 144720276 to 144720307 31 - TSS region transcription start site region 35995
Tssr35996 3 144720315 to 144720336 21 - TSS region transcription start site region 35996
Tssr1075 3 144720358 to 144720365 7 - TSS region transcription start site region 1075
Tssr35997 3 144720369 to 144720384 15 - TSS region transcription start site region 35997
Tssr35998 3 144720387 to 144720395 8 - TSS region transcription start site region 35998
Tssr35999 3 144720402 to 144720416 14 - TSS region transcription start site region 35999
Tssr32278 3 144727791 to 144727809 18 + TSS region transcription start site region 32278
Gm9419 3 144727884 to 144728450 566 + pseudogene predicted gene 9419
Clca3a1 3 144729677 to 144760977 31300 - protein coding gene chloride channel accessory 3A1
Gm34866 3 144749482 to 144750087 605 + antisense lncRNA gene predicted gene, 34866
D3Mit161a 3 144758867 to 144758983 116 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 161a
Tssr36000 3 144760729 to 144760746 17 - TSS region transcription start site region 36000
Tssr1076 3 144760756 to 144760767 11 - TSS region transcription start site region 1076
Tssr36001 3 144760794 to 144760809 15 - TSS region transcription start site region 36001
Tssr36002 3 144760859 to 144760868 9 - TSS region transcription start site region 36002
Gm17743 3 144779012 to 144780686 1674 + pseudogene predicted gene, 17743
Clca3a2 3 144796559 to 144819494 22935 - protein coding gene chloride channel accessory 3A2
Gm43240 3 144808376 to 144813538 5162 + antisense lncRNA gene predicted gene 43240
D3Mit161b 3 144817611 to 144817737 126 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 161b
Clca3b 3 144822623 to 144849302 26679 - protein coding gene chloride channel accessory 3B
Tssr36003 3 144827347 to 144827389 42 - TSS region transcription start site region 36003
Gm16215 3 144847601 to 144848120 519 + pseudogene predicted gene 16215
Tssr36004 3 144849301 to 144849302 1 - TSS region transcription start site region 36004
Clca4c-ps 3 144879322 to 144896011 16689 - pseudogene chloride channel accessory 4C, pseudogene
Tssr36005 3 144889773 to 144889779 6 - TSS region transcription start site region 36005
Clca4b 3 144910921 to 144932529 21608 - protein coding gene chloride channel accessory 4B
Tssr36006 3 144932523 to 144932536 13 - TSS region transcription start site region 36006
Gm16233 3 144947561 to 144954878 7317 + antisense lncRNA gene predicted gene 16233
Tssr32279 3 144947778 to 144947816 38 + TSS region transcription start site region 32279
Clca4a 3 144952486 to 144975045 22559 - protein coding gene chloride channel accessory 4A
Gm35066 3 144972124 to 144982560 10436 + lncRNA gene predicted gene, 35066
Tssr36007 3 144975040 to 144975046 6 - TSS region transcription start site region 36007
Clca1 3 145004537 to 145032776 28239 - protein coding gene chloride channel accessory 1
Tssr36008 3 145009821 to 145009838 17 - TSS region transcription start site region 36008
Tssr36009 3 145009886 to 145009897 11 - TSS region transcription start site region 36009
Tssr36010 3 145018682 to 145018696 14 - TSS region transcription start site region 36010
Tssr36011 3 145018729 to 145018744 15 - TSS region transcription start site region 36011
Tssr36012 3 145018942 to 145018969 27 - TSS region transcription start site region 36012
Tssr36013 3 145024580 to 145024596 16 - TSS region transcription start site region 36013
Tssr32280 3 145027353 to 145027379 26 + TSS region transcription start site region 32280
Tssr36014 3 145032765 to 145032781 16 - TSS region transcription start site region 36014
Tssr36015 3 145032869 to 145032898 29 - TSS region transcription start site region 36015
Tssr36016 3 145032957 to 145032969 12 - TSS region transcription start site region 36016