Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:143990214-144651748

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40161 3 144018044 to 144053844 35800 - lncRNA gene predicted gene, 40161
Tssr1071 3 144110792 to 144110801 9 - TSS region transcription start site region 1071
Gm34078 3 144132345 to 144136012 3667 - lincRNA gene predicted gene, 34078
Tssr32257 3 144135897 to 144135925 28 + TSS region transcription start site region 32257
Tssr32258 3 144138930 to 144138947 17 + TSS region transcription start site region 32258
Gm34162 3 144149776 to 144180170 30394 + lncRNA gene predicted gene, 34162
Tssr32259 3 144155924 to 144155935 11 + TSS region transcription start site region 32259
Tssr35955 3 144186517 to 144186521 4 - TSS region transcription start site region 35955
Lmo4 3 144188530 to 144205220 16690 - protein coding gene LIM domain only 4
Tssr32260 3 144188711 to 144188733 22 + TSS region transcription start site region 32260
Tssr35956 3 144188817 to 144188828 11 - TSS region transcription start site region 35956
Tssr35957 3 144188912 to 144188946 34 - TSS region transcription start site region 35957
Tssr35958 3 144188989 to 144189006 17 - TSS region transcription start site region 35958
Tssr35959 3 144189011 to 144189030 19 - TSS region transcription start site region 35959
Tssr35960 3 144193993 to 144194033 40 - TSS region transcription start site region 35960
Gm43445 3 144197172 to 144199262 2090 - sense intronic lncRNA gene predicted gene 43445
Cpgi13893 3 144198464 to 144199013 549 CpG island CpG island 13893
Tssr35961 3 144199386 to 144199390 4 - TSS region transcription start site region 35961
Tssr35962 3 144200927 to 144200943 16 - TSS region transcription start site region 35962
Cpgi13894 3 144201811 to 144202661 850 CpG island CpG island 13894
Tssr35963 3 144201915 to 144201953 38 - TSS region transcription start site region 35963
Tssr35964 3 144201962 to 144201969 7 - TSS region transcription start site region 35964
Tssr35965 3 144202300 to 144202345 45 - TSS region transcription start site region 35965
Tssr35966 3 144202350 to 144202367 17 - TSS region transcription start site region 35966
Tssr35967 3 144202579 to 144202615 36 - TSS region transcription start site region 35967
Cpgi13895 3 144204550 to 144205960 1410 CpG island CpG island 13895
Tssr35968 3 144204858 to 144204878 20 - TSS region transcription start site region 35968
Tssr35969 3 144204886 to 144204929 43 - TSS region transcription start site region 35969
Tssr35970 3 144204956 to 144204981 25 - TSS region transcription start site region 35970
Tssr35971 3 144205165 to 144205208 43 - TSS region transcription start site region 35971
Tssr35972 3 144205507 to 144205530 23 - TSS region transcription start site region 35972
Tssr35973 3 144205943 to 144205985 42 - TSS region transcription start site region 35973
Gm46828 3 144224379 to 144236328 11949 - lncRNA gene predicted gene, 46828
Tssr35974 3 144232041 to 144232057 16 - TSS region transcription start site region 35974
Tssr35975 3 144232095 to 144232118 23 - TSS region transcription start site region 35975
Tssr35976 3 144257326 to 144257372 46 - TSS region transcription start site region 35976
D3Mit197 3 144272498 to 144272686 188 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 197
Tssr32261 3 144283756 to 144283781 25 + TSS region transcription start site region 32261
Gm43446 3 144283811 to 144284906 1095 + lincRNA gene predicted gene 43446
Gm43447 3 144320214 to 144321748 1534 + lincRNA gene predicted gene 43447
Tssr1072 3 144324856 to 144324863 7 + TSS region transcription start site region 1072
Cpgi13896 3 144374665 to 144375003 338 CpG island CpG island 13896
Gm34434 3 144377476 to 144382155 4679 - lncRNA gene predicted gene, 34434
Cpgi13897 3 144380981 to 144381232 251 CpG island CpG island 13897
Cpgi13898 3 144396572 to 144396791 219 CpG island CpG island 13898
Gm5857 3 144427180 to 144427672 492 - pseudogene predicted gene 5857
Hs2st1 3 144430008 to 144570216 140208 - protein coding gene heparan sulfate 2-O-sulfotransferase 1
Gm43707 3 144493986 to 144497172 3186 - sense intronic lncRNA gene predicted gene 43707
Gm43560 3 144523229 to 144524001 772 - sense intronic lncRNA gene predicted gene 43560
Gm46829 3 144540766 to 144555583 14817 - lncRNA gene predicted gene, 46829
Tssr35977 3 144555323 to 144555365 42 - TSS region transcription start site region 35977
Cpgi13899 3 144561646 to 144561849 203 CpG island CpG island 13899
Cpgi13900 3 144568887 to 144571029 2142 CpG island CpG island 13900
Tssr32262 3 144569982 to 144569989 7 + TSS region transcription start site region 32262
Tssr35978 3 144570136 to 144570227 91 - TSS region transcription start site region 35978
Tssr32263 3 144570279 to 144570284 5 + TSS region transcription start site region 32263
Tssr32264 3 144570304 to 144570309 5 + TSS region transcription start site region 32264
Tssr32265 3 144570372 to 144570383 11 + TSS region transcription start site region 32265
Tssr32266 3 144570396 to 144570407 11 + TSS region transcription start site region 32266
Tssr32267 3 144570409 to 144570490 81 + TSS region transcription start site region 32267
Selenof 3 144570427 to 144597677 27250 + protein coding gene selenoprotein F
Tssr32268 3 144570556 to 144570571 15 + TSS region transcription start site region 32268
Tssr32269 3 144570687 to 144570721 34 + TSS region transcription start site region 32269
Tssr32270 3 144577594 to 144577614 20 + TSS region transcription start site region 32270
Gm24406 3 144586825 to 144586952 127 - snoRNA gene predicted gene, 24406
9430014F16Rik 3 144590424 to 144591956 1532 unclassified gene RIKEN cDNA 9430014F16 gene
Tssr32271 3 144597045 to 144597098 53 + TSS region transcription start site region 32271
Rpl9-ps8 3 144625403 to 144625964 561 - pseudogene ribosomal protein L9, pseudogene 8