Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:142691614-144474170

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122 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mhdadsk6 3 131906318 to 143250921 11344603 heritable phenotypic marker Martin Hrabe de Angelis dark skin 6
Mhdadsk8 3 131906318 to 143250921 11344603 heritable phenotypic marker Martin Hrabe de Angelis dark skin 8
Cpgi13889 3 142700472 to 142701455 983 CpG island CpG island 13889
Kyat3 3 142701019 to 142744911 43892 + protein coding gene kynurenine aminotransferase 3
Tssr32246 3 142701026 to 142701043 17 + TSS region transcription start site region 32246
Tssr32247 3 142701044 to 142701065 21 + TSS region transcription start site region 32247
Tssr32248 3 142701067 to 142701105 38 + TSS region transcription start site region 32248
Tssr32249 3 142712816 to 142712821 5 + TSS region transcription start site region 32249
Tssr32250 3 142731527 to 142731531 4 + TSS region transcription start site region 32250
Gm15540 3 142743661 to 142744681 1020 - antisense lncRNA gene predicted gene 15540
Cpgi13890 3 142764956 to 142765662 706 CpG island CpG island 13890
Tssr32251 3 142765216 to 142765232 16 + TSS region transcription start site region 32251
Gtf2b 3 142765247 to 142783606 18359 + protein coding gene general transcription factor IIB
Gm24457 3 142772972 to 142773076 104 - snRNA gene predicted gene, 24457
Pkn2 3 142790902 to 142882004 91102 - protein coding gene protein kinase N2
Gm25965 3 142795102 to 142795194 92 + snoRNA gene predicted gene, 25965
D3Mit38 3 142830837 to 142830952 115 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 38
Tssr35949 3 142853695 to 142853719 24 - TSS region transcription start site region 35949
Cpgi13891 3 142881080 to 142882572 1492 CpG island CpG island 13891
Gm43646 3 142881588 to 142898245 16657 + unclassified non-coding RNA gene predicted gene 43646
Tssr1069 3 142881721 to 142881724 3 - TSS region transcription start site region 1069
Tssr35950 3 142881917 to 142881939 22 - TSS region transcription start site region 35950
Tssr35951 3 142881942 to 142882017 75 - TSS region transcription start site region 35951
Tssr35952 3 142882034 to 142882042 8 - TSS region transcription start site region 35952
Tssr35953 3 142882440 to 142882457 17 - TSS region transcription start site region 35953
9530052C20Rik 3 142882495 to 142892921 10426 + lincRNA gene RIKEN cDNA 9530052C20 gene
Gm31306 3 142898075 to 142898582 507 + pseudogene predicted gene, 31306
Tssr32252 3 142927467 to 142927491 24 + TSS region transcription start site region 32252
Gm33289 3 142957055 to 142969971 12916 - lncRNA gene predicted gene, 33289
Gm2574 3 142962611 to 142963612 1001 + pseudogene predicted pseudogene 2574
Tssr32253 3 143017122 to 143017148 26 + TSS region transcription start site region 32253
Tssr32254 3 143017149 to 143017168 19 + TSS region transcription start site region 32254
Tssr1070 3 143017210 to 143017220 10 + TSS region transcription start site region 1070
Tssr32255 3 143017244 to 143017276 32 + TSS region transcription start site region 32255
4930519L02Rik 3 143017660 to 143040752 23092 + lincRNA gene RIKEN cDNA 4930519L02 gene
Cpgi13892 3 143100651 to 143101186 535 CpG island CpG island 13892
Gm43614 3 143107948 to 143157903 49955 + lincRNA gene predicted gene 43614
D3Mit127 3 143185449 to 143185623 174 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 127
A830019L24Rik 3 143243055 to 143257996 14941 + lincRNA gene RIKEN cDNA A830019L24 gene
D3Mit258 3 143250705 to 143250921 216 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 258
Gm40159 3 143278152 to 143379439 101287 - lncRNA gene predicted gene, 40159
Gm33514 3 143323330 to 143326209 2879 + lncRNA gene predicted gene, 33514
Gm43613 3 143330420 to 143332032 1612 + lincRNA gene predicted gene 43613
Gm43612 3 143368576 to 143371782 3206 + lincRNA gene predicted gene 43612
1700001N15Rik 3 143409401 to 143411532 2131 + lincRNA gene RIKEN cDNA 1700001N15 gene
Gm33604 3 143479025 to 143495961 16936 - lncRNA gene predicted gene, 33604
D3Mit320 3 143564487 to 143564606 119 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 320
Hrtfm2 3 143564487 to 147339967 3775480 QTL heart failure modifier 2
Pstc1 3 143564487 to 143564606 119 QTL periosteal circumference 1
Gm43616 3 143575533 to 143577001 1468 - lincRNA gene predicted gene 43616
Gm33651 3 143576614 to 143589170 12556 + lincRNA gene predicted gene, 33651
Gm33758 3 143603805 to 143624575 20770 + lincRNA gene predicted gene, 33758
Gm38006 3 143644890 to 143650953 6063 + unclassified gene predicted gene, 38006
Gm33809 3 143645577 to 143666546 20969 + lncRNA gene predicted gene, 33809
Letohc1 3 143647225 to 143647422 197 QTL low ethanol consumption 1
D3Mit17 3 143647225 to 143647422 197 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 17
Scc7 3 143647225 to 156658471 13011246 QTL colon tumor susceptibility 7
Sles3 3 143647422 to 37120713 -106526709 QTL systemic lupus erythmatosus suppressor 3
Gm42704 3 143650310 to 143652087 1777 + lincRNA gene predicted gene 42704
Gm6260 3 143670892 to 143712143 41251 - lincRNA gene predicted gene 6260
Gm24728 3 143674943 to 143675067 124 + snoRNA gene predicted gene, 24728
Gm33867 3 143743121 to 143772786 29665 + lncRNA gene predicted gene, 33867
Gm42705 3 143743377 to 143827012 83635 + lincRNA gene predicted gene 42705
D3Mit84 3 143754753 to 143754919 166 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 84
Fpli 3 143754753 to 143754919 166 QTL fasting plasma insulin
Gm42706 3 143770539 to 143772448 1909 + lincRNA gene predicted gene 42706
D3Mit198 3 143799516 to 143799641 125 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 198
Gm33925 3 143850970 to 143901705 50735 + lncRNA gene predicted gene, 33925
Gm40160 3 143861435 to 143874389 12954 - lncRNA gene predicted gene, 40160
Gm2505 3 143872995 to 143873819 824 + pseudogene predicted gene 2505
Gm42707 3 143878393 to 143954774 76381 - lincRNA gene predicted gene 42707
Gm42708 3 143898047 to 143898951 904 + lincRNA gene predicted gene 42708
Tssr35954 3 143936641 to 143936642 1 - TSS region transcription start site region 35954
Gm33988 3 143973720 to 143987642 13922 + lncRNA gene predicted gene, 33988
Tssr32256 3 143973747 to 143973754 7 + TSS region transcription start site region 32256
Gm40161 3 144018044 to 144053844 35800 - lncRNA gene predicted gene, 40161
Tssr1071 3 144110792 to 144110801 9 - TSS region transcription start site region 1071
Gm34078 3 144132345 to 144136012 3667 - lincRNA gene predicted gene, 34078
Tssr32257 3 144135897 to 144135925 28 + TSS region transcription start site region 32257
Tssr32258 3 144138930 to 144138947 17 + TSS region transcription start site region 32258
Gm34162 3 144149776 to 144180170 30394 + lncRNA gene predicted gene, 34162
Tssr32259 3 144155924 to 144155935 11 + TSS region transcription start site region 32259
Tssr35955 3 144186517 to 144186521 4 - TSS region transcription start site region 35955
Lmo4 3 144188530 to 144205220 16690 - protein coding gene LIM domain only 4
Tssr32260 3 144188711 to 144188733 22 + TSS region transcription start site region 32260
Tssr35956 3 144188817 to 144188828 11 - TSS region transcription start site region 35956
Tssr35957 3 144188912 to 144188946 34 - TSS region transcription start site region 35957
Tssr35958 3 144188989 to 144189006 17 - TSS region transcription start site region 35958
Tssr35959 3 144189011 to 144189030 19 - TSS region transcription start site region 35959
Tssr35960 3 144193993 to 144194033 40 - TSS region transcription start site region 35960
Gm43445 3 144197172 to 144199262 2090 - sense intronic lncRNA gene predicted gene 43445
Cpgi13893 3 144198464 to 144199013 549 CpG island CpG island 13893
Tssr35961 3 144199386 to 144199390 4 - TSS region transcription start site region 35961
Tssr35962 3 144200927 to 144200943 16 - TSS region transcription start site region 35962
Cpgi13894 3 144201811 to 144202661 850 CpG island CpG island 13894
Tssr35963 3 144201915 to 144201953 38 - TSS region transcription start site region 35963
Tssr35964 3 144201962 to 144201969 7 - TSS region transcription start site region 35964
Tssr35965 3 144202300 to 144202345 45 - TSS region transcription start site region 35965
Tssr35966 3 144202350 to 144202367 17 - TSS region transcription start site region 35966
Tssr35967 3 144202579 to 144202615 36 - TSS region transcription start site region 35967
Cpgi13895 3 144204550 to 144205960 1410 CpG island CpG island 13895
Tssr35968 3 144204858 to 144204878 20 - TSS region transcription start site region 35968
Tssr35969 3 144204886 to 144204929 43 - TSS region transcription start site region 35969
Tssr35970 3 144204956 to 144204981 25 - TSS region transcription start site region 35970
Tssr35971 3 144205165 to 144205208 43 - TSS region transcription start site region 35971
Tssr35972 3 144205507 to 144205530 23 - TSS region transcription start site region 35972
Tssr35973 3 144205943 to 144205985 42 - TSS region transcription start site region 35973
Gm46828 3 144224379 to 144236328 11949 - lncRNA gene predicted gene, 46828
Tssr35974 3 144232041 to 144232057 16 - TSS region transcription start site region 35974
Tssr35975 3 144232095 to 144232118 23 - TSS region transcription start site region 35975
Tssr35976 3 144257326 to 144257372 46 - TSS region transcription start site region 35976
D3Mit197 3 144272498 to 144272686 188 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 197
Tssr32261 3 144283756 to 144283781 25 + TSS region transcription start site region 32261
Gm43446 3 144283811 to 144284906 1095 + lincRNA gene predicted gene 43446
Gm43447 3 144320214 to 144321748 1534 + lincRNA gene predicted gene 43447
Tssr1072 3 144324856 to 144324863 7 + TSS region transcription start site region 1072
Cpgi13896 3 144374665 to 144375003 338 CpG island CpG island 13896
Gm34434 3 144377476 to 144382155 4679 - lncRNA gene predicted gene, 34434
Cpgi13897 3 144380981 to 144381232 251 CpG island CpG island 13897
Cpgi13898 3 144396572 to 144396791 219 CpG island CpG island 13898
Gm5857 3 144427180 to 144427672 492 - pseudogene predicted gene 5857
Hs2st1 3 144430008 to 144570216 140208 - protein coding gene heparan sulfate 2-O-sulfotransferase 1