Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:142672467-143182491

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi13888 3 142688076 to 142688333 257 CpG island CpG island 13888
Cpgi13889 3 142700472 to 142701455 983 CpG island CpG island 13889
Kyat3 3 142701019 to 142744911 43892 + protein coding gene kynurenine aminotransferase 3
Tssr32246 3 142701026 to 142701043 17 + TSS region transcription start site region 32246
Tssr32247 3 142701044 to 142701065 21 + TSS region transcription start site region 32247
Tssr32248 3 142701067 to 142701105 38 + TSS region transcription start site region 32248
Tssr32249 3 142712816 to 142712821 5 + TSS region transcription start site region 32249
Tssr32250 3 142731527 to 142731531 4 + TSS region transcription start site region 32250
Gm15540 3 142743661 to 142744681 1020 - antisense lncRNA gene predicted gene 15540
Cpgi13890 3 142764956 to 142765662 706 CpG island CpG island 13890
Tssr32251 3 142765216 to 142765232 16 + TSS region transcription start site region 32251
Gtf2b 3 142765247 to 142783606 18359 + protein coding gene general transcription factor IIB
Gm24457 3 142772972 to 142773076 104 - snRNA gene predicted gene, 24457
Pkn2 3 142790902 to 142882004 91102 - protein coding gene protein kinase N2
Gm25965 3 142795102 to 142795194 92 + snoRNA gene predicted gene, 25965
D3Mit38 3 142830837 to 142830952 115 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 38
Tssr35949 3 142853695 to 142853719 24 - TSS region transcription start site region 35949
Cpgi13891 3 142881080 to 142882572 1492 CpG island CpG island 13891
Gm43646 3 142881588 to 142898245 16657 + unclassified non-coding RNA gene predicted gene 43646
Tssr1069 3 142881721 to 142881724 3 - TSS region transcription start site region 1069
Tssr35950 3 142881917 to 142881939 22 - TSS region transcription start site region 35950
Tssr35951 3 142881942 to 142882017 75 - TSS region transcription start site region 35951
Tssr35952 3 142882034 to 142882042 8 - TSS region transcription start site region 35952
Tssr35953 3 142882440 to 142882457 17 - TSS region transcription start site region 35953
9530052C20Rik 3 142882495 to 142892921 10426 + lincRNA gene RIKEN cDNA 9530052C20 gene
Gm31306 3 142898075 to 142898582 507 + pseudogene predicted gene, 31306
Tssr32252 3 142927467 to 142927491 24 + TSS region transcription start site region 32252
Gm33289 3 142957055 to 142969971 12916 - lncRNA gene predicted gene, 33289
Gm2574 3 142962611 to 142963612 1001 + pseudogene predicted pseudogene 2574
Tssr32253 3 143017122 to 143017148 26 + TSS region transcription start site region 32253
Tssr32254 3 143017149 to 143017168 19 + TSS region transcription start site region 32254
Tssr1070 3 143017210 to 143017220 10 + TSS region transcription start site region 1070
Tssr32255 3 143017244 to 143017276 32 + TSS region transcription start site region 32255
4930519L02Rik 3 143017660 to 143040752 23092 + lincRNA gene RIKEN cDNA 4930519L02 gene
Cpgi13892 3 143100651 to 143101186 535 CpG island CpG island 13892
Gm43614 3 143107948 to 143157903 49955 + lincRNA gene predicted gene 43614