Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:142617244-143417276

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mhdadsk8 3 131906318 to 143250921 11344603 heritable phenotypic marker Martin Hrabe de Angelis dark skin 8
Mhdadsk6 3 131906318 to 143250921 11344603 heritable phenotypic marker Martin Hrabe de Angelis dark skin 6
Gbp2b 3 142594847 to 142619179 24332 + protein coding gene guanylate binding protein 2b
Tssr32216 3 142618174 to 142618185 11 + TSS region transcription start site region 32216
Tssr32217 3 142618201 to 142618223 22 + TSS region transcription start site region 32217
Tssr32218 3 142618259 to 142618277 18 + TSS region transcription start site region 32218
Tssr32219 3 142618288 to 142618314 26 + TSS region transcription start site region 32219
Tssr32220 3 142618315 to 142618328 13 + TSS region transcription start site region 32220
Tssr32221 3 142618334 to 142618346 12 + TSS region transcription start site region 32221
Tssr32222 3 142618383 to 142618402 19 + TSS region transcription start site region 32222
Tssr32223 3 142618444 to 142618459 15 + TSS region transcription start site region 32223
Tssr32224 3 142618501 to 142618513 12 + TSS region transcription start site region 32224
Tssr32225 3 142618834 to 142618851 17 + TSS region transcription start site region 32225
Tssr32226 3 142618882 to 142618891 9 + TSS region transcription start site region 32226
Tssr35947 3 142619175 to 142619181 6 - TSS region transcription start site region 35947
Tssr32227 3 142620596 to 142620627 31 + TSS region transcription start site region 32227
Tssr32228 3 142620647 to 142620665 18 + TSS region transcription start site region 32228
Gbp2 3 142620663 to 142638008 17345 + protein coding gene guanylate binding protein 2
Tssr32229 3 142620686 to 142620704 18 + TSS region transcription start site region 32229
Tssr32230 3 142620722 to 142620733 11 + TSS region transcription start site region 32230
Tssr32231 3 142620739 to 142620750 11 + TSS region transcription start site region 32231
Tssr32232 3 142621273 to 142621291 18 + TSS region transcription start site region 32232
Tssr32233 3 142623729 to 142623801 72 + TSS region transcription start site region 32233
Tssr32234 3 142623805 to 142623834 29 + TSS region transcription start site region 32234
Mir6381 3 142623860 to 142623946 86 - miRNA gene microRNA 6381
Tssr35948 3 142623862 to 142623891 29 - TSS region transcription start site region 35948
Tssr32235 3 142624616 to 142624661 45 + TSS region transcription start site region 32235
Tssr32236 3 142633454 to 142633485 31 + TSS region transcription start site region 32236
Tssr32237 3 142635281 to 142635294 13 + TSS region transcription start site region 32237
Tssr32238 3 142635321 to 142635332 11 + TSS region transcription start site region 32238
Tssr32239 3 142635783 to 142635814 31 + TSS region transcription start site region 32239
Tssr32240 3 142635841 to 142635855 14 + TSS region transcription start site region 32240
Tssr32241 3 142635867 to 142635878 11 + TSS region transcription start site region 32241
Tssr32242 3 142637419 to 142637430 11 + TSS region transcription start site region 32242
Tssr32243 3 142637492 to 142637517 25 + TSS region transcription start site region 32243
Tssr32244 3 142637628 to 142637641 13 + TSS region transcription start site region 32244
Tssr32245 3 142637694 to 142637756 62 + TSS region transcription start site region 32245
Gbp2-ps 3 142658951 to 142663508 4557 + pseudogene guanylate binding protein 2, pseudogene
Gm19166 3 142664444 to 142665506 1062 - pseudogene predicted gene, 19166
Cpgi13888 3 142688076 to 142688333 257 CpG island CpG island 13888
Cpgi13889 3 142700472 to 142701455 983 CpG island CpG island 13889
Kyat3 3 142701019 to 142744911 43892 + protein coding gene kynurenine aminotransferase 3
Tssr32246 3 142701026 to 142701043 17 + TSS region transcription start site region 32246
Tssr32247 3 142701044 to 142701065 21 + TSS region transcription start site region 32247
Tssr32248 3 142701067 to 142701105 38 + TSS region transcription start site region 32248
Tssr32249 3 142712816 to 142712821 5 + TSS region transcription start site region 32249
Tssr32250 3 142731527 to 142731531 4 + TSS region transcription start site region 32250
Gm15540 3 142743661 to 142744681 1020 - antisense lncRNA gene predicted gene 15540
Cpgi13890 3 142764956 to 142765662 706 CpG island CpG island 13890
Tssr32251 3 142765216 to 142765232 16 + TSS region transcription start site region 32251
Gtf2b 3 142765247 to 142783606 18359 + protein coding gene general transcription factor IIB
Gm24457 3 142772972 to 142773076 104 - snRNA gene predicted gene, 24457
Pkn2 3 142790902 to 142882004 91102 - protein coding gene protein kinase N2
Gm25965 3 142795102 to 142795194 92 + snoRNA gene predicted gene, 25965
D3Mit38 3 142830837 to 142830952 115 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 38
Tssr35949 3 142853695 to 142853719 24 - TSS region transcription start site region 35949
Cpgi13891 3 142881080 to 142882572 1492 CpG island CpG island 13891
Gm43646 3 142881588 to 142898245 16657 + unclassified non-coding RNA gene predicted gene 43646
Tssr1069 3 142881721 to 142881724 3 - TSS region transcription start site region 1069
Tssr35950 3 142881917 to 142881939 22 - TSS region transcription start site region 35950
Tssr35951 3 142881942 to 142882017 75 - TSS region transcription start site region 35951
Tssr35952 3 142882034 to 142882042 8 - TSS region transcription start site region 35952
Tssr35953 3 142882440 to 142882457 17 - TSS region transcription start site region 35953
9530052C20Rik 3 142882495 to 142892921 10426 + lincRNA gene RIKEN cDNA 9530052C20 gene
Gm31306 3 142898075 to 142898582 507 + pseudogene predicted gene, 31306
Tssr32252 3 142927467 to 142927491 24 + TSS region transcription start site region 32252
Gm33289 3 142957055 to 142969971 12916 - lncRNA gene predicted gene, 33289
Gm2574 3 142962611 to 142963612 1001 + pseudogene predicted pseudogene 2574
Tssr32253 3 143017122 to 143017148 26 + TSS region transcription start site region 32253
Tssr32254 3 143017149 to 143017168 19 + TSS region transcription start site region 32254
Tssr1070 3 143017210 to 143017220 10 + TSS region transcription start site region 1070
Tssr32255 3 143017244 to 143017276 32 + TSS region transcription start site region 32255
4930519L02Rik 3 143017660 to 143040752 23092 + lincRNA gene RIKEN cDNA 4930519L02 gene
Cpgi13892 3 143100651 to 143101186 535 CpG island CpG island 13892
Gm43614 3 143107948 to 143157903 49955 + lincRNA gene predicted gene 43614
D3Mit127 3 143185449 to 143185623 174 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 127
A830019L24Rik 3 143243055 to 143257996 14941 + lincRNA gene RIKEN cDNA A830019L24 gene
D3Mit258 3 143250705 to 143250921 216 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 258
Gm40159 3 143278152 to 143379439 101287 - lncRNA gene predicted gene, 40159
Gm33514 3 143323330 to 143326209 2879 + lncRNA gene predicted gene, 33514
Gm43613 3 143330420 to 143332032 1612 + lincRNA gene predicted gene 43613
Gm43612 3 143368576 to 143371782 3206 + lincRNA gene predicted gene 43612
1700001N15Rik 3 143409401 to 143411532 2131 + lincRNA gene RIKEN cDNA 1700001N15 gene