Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:139324097-142354637

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stpg2 3 139205694 to 139710299 504605 + protein coding gene sperm tail PG rich repeat containing 2
Gm43163 3 139411795 to 139412236 441 + pseudogene predicted gene 43163
Gm24260 3 139417757 to 139417863 106 - snRNA gene predicted gene, 24260
D3Mit351 3 139599455 to 139599553 98 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 351
Gm2451 3 139649379 to 139650377 998 + pseudogene predicted pseudogene 2451
Gm32693 3 139777153 to 139780759 3606 - lincRNA gene predicted gene, 32693
Gm43678 3 139812111 to 139812764 653 - lincRNA gene predicted gene 43678
Tssr35911 3 139886014 to 139886027 13 - TSS region transcription start site region 35911
Tssr32027 3 139933307 to 139933325 18 + TSS region transcription start site region 32027
Mir7j 3 140028249 to 140028370 121 + miRNA gene microRNA 7j
Gm4863 3 140116655 to 140118035 1380 - pseudogene predicted gene 4863
Gm19184 3 140169298 to 140170206 908 + pseudogene predicted gene, 19184
Gm19080 3 140506718 to 140507267 549 - pseudogene predicted gene, 19080
Gm31211 3 140627180 to 140627432 252 - pseudogene predicted gene, 31211
Gm43049 3 140692038 to 140760704 68666 - lincRNA gene predicted gene 43049
D3Mit195.2 3 140784631 to 140784758 127 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 195.2
D3Mit195 3 140784763 to 140784899 136 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 195
Gm6214 3 140839097 to 140839637 540 - pseudogene predicted gene 6214
Gm43276 3 140871173 to 140871536 363 - pseudogene predicted gene 43276
Gm32754 3 140909907 to 140917545 7638 - lincRNA gene predicted gene, 32754
Gm32875 3 140928605 to 140964731 36126 - lncRNA gene predicted gene, 32875
4930590L14Rik 3 140951835 to 140952676 841 + lincRNA gene RIKEN cDNA 4930590L14 gene
Tssr35912 3 140964432 to 140964476 44 - TSS region transcription start site region 35912
Pdha2 3 141210004 to 141212355 2351 - protein coding gene pyruvate dehydrogenase E1 alpha 2
Cpgi13883 3 141211149 to 141211980 831 CpG island CpG island 13883
Tssr1064 3 141211760 to 141211762 2 - TSS region transcription start site region 1064
Tssr35913 3 141211764 to 141211817 53 - TSS region transcription start site region 35913
Tssr35914 3 141211820 to 141211833 13 - TSS region transcription start site region 35914
Tssr35915 3 141211835 to 141211838 3 - TSS region transcription start site region 35915
Tssr32028 3 141211890 to 141211900 10 + TSS region transcription start site region 32028
Tssr32029 3 141214475 to 141214479 4 + TSS region transcription start site region 32029
Tssr32030 3 141449195 to 141449198 3 + TSS region transcription start site region 32030
Gm15688 3 141457976 to 141465333 7357 - antisense lncRNA gene predicted gene 15688
Tssr35916 3 141464575 to 141464578 3 - TSS region transcription start site region 35916
Cpgi13884 3 141464640 to 141466506 1866 CpG island CpG island 13884
Tssr1065 3 141464695 to 141464702 7 + TSS region transcription start site region 1065
Tssr32031 3 141465116 to 141465129 13 + TSS region transcription start site region 32031
Tssr32032 3 141465179 to 141465223 44 + TSS region transcription start site region 32032
Tssr1066 3 141465261 to 141465269 8 + TSS region transcription start site region 1066
Tssr32033 3 141465371 to 141465381 10 + TSS region transcription start site region 32033
Tssr32034 3 141465486 to 141465491 5 + TSS region transcription start site region 32034
Tssr32035 3 141465542 to 141465549 7 + TSS region transcription start site region 32035
Unc5c 3 141465564 to 141834924 369360 + protein coding gene unc-5 netrin receptor C
Tssr32036 3 141465567 to 141465570 3 + TSS region transcription start site region 32036
Tssr32037 3 141465592 to 141465611 19 + TSS region transcription start site region 32037
Tssr1067 3 141465654 to 141465664 10 + TSS region transcription start site region 1067
D3Mit368 3 141474487 to 141474636 149 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-368
Tssr32038 3 141491534 to 141491538 4 + TSS region transcription start site region 32038
9430047L24Rik 3 141494061 to 141498747 4686 unclassified gene RIKEN cDNA 9430047L24 gene
Tssr1068 3 141495199 to 141495204 5 + TSS region transcription start site region 1068
Tssr32039 3 141510121 to 141510133 12 + TSS region transcription start site region 32039
Tssr32040 3 141527699 to 141527702 3 + TSS region transcription start site region 32040
Tssr32041 3 141531860 to 141531877 17 + TSS region transcription start site region 32041
D3Mit196 3 141536841 to 141536984 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 196
Tssr32042 3 141592064 to 141592068 4 + TSS region transcription start site region 32042
Tssr32043 3 141615254 to 141615259 5 + TSS region transcription start site region 32043
Tssr32044 3 141631964 to 141631972 8 + TSS region transcription start site region 32044
Tssr32045 3 141634561 to 141634602 41 + TSS region transcription start site region 32045
8030466E21Rik 3 141649174 to 141653112 3938 unclassified gene RIKEN cDNA 8030466E21 gene
Gm15689 3 141662889 to 141682900 20011 - antisense lncRNA gene predicted gene 15689
Gm43826 3 141686553 to 141689164 2611 + unclassified gene predicted gene 43826
Tssr35917 3 141814705 to 141814707 2 - TSS region transcription start site region 35917
Bmpr1b 3 141837136 to 142169425 332289 - protein coding gene bone morphogenetic protein receptor, type 1B
Tssr35918 3 141931404 to 141931439 35 - TSS region transcription start site region 35918
Tssr35919 3 141931484 to 141931498 14 - TSS region transcription start site region 35919
Tssr35920 3 141931554 to 141931565 11 - TSS region transcription start site region 35920
Tssr35921 3 141931566 to 141931576 10 - TSS region transcription start site region 35921
Tssr35922 3 141931877 to 141931880 3 - TSS region transcription start site region 35922
Tssr35923 3 141982206 to 141982221 15 - TSS region transcription start site region 35923
Tssr35924 3 141982224 to 141982237 13 - TSS region transcription start site region 35924
Tssr32046 3 142000682 to 142000686 4 + TSS region transcription start site region 32046
D3Mit160 3 142041478 to 142041614 136 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 160
D3Mit160.2 3 142041591 to 142041746 155 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 160.2
Tssr35925 3 142108450 to 142108465 15 - TSS region transcription start site region 35925
Tssr35926 3 142144757 to 142144771 14 - TSS region transcription start site region 35926
Tssr35927 3 142150091 to 142150097 6 - TSS region transcription start site region 35927
Cpgi13885 3 142168771 to 142169616 845 CpG island CpG island 13885
Tssr35928 3 142169196 to 142169261 65 - TSS region transcription start site region 35928
Tssr35929 3 142169311 to 142169329 18 - TSS region transcription start site region 35929
D3Mit112 3 142177450 to 142177587 137 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 112
Gm6059 3 142184412 to 142184751 339 - pseudogene predicted gene 6059
Pdlim5 3 142239590 to 142395696 156106 - protein coding gene PDZ and LIM domain 5
Tssr35930 3 142249552 to 142249561 9 - TSS region transcription start site region 35930
Tssr35931 3 142249660 to 142249667 7 - TSS region transcription start site region 35931
Tssr35932 3 142249680 to 142249689 9 - TSS region transcription start site region 35932
Tssr35933 3 142285441 to 142285444 3 - TSS region transcription start site region 35933