Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:138550178-139600253

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eif4e 3 138526191 to 138559696 33505 + protein coding gene eukaryotic translation initiation factor 4E
Tssr31999 3 138550571 to 138550616 45 + TSS region transcription start site region 31999
Tssr32000 3 138550617 to 138550627 10 + TSS region transcription start site region 32000
Tssr32001 3 138550654 to 138550677 23 + TSS region transcription start site region 32001
9430079G20Rik 3 138558418 to 138559693 1275 unclassified gene RIKEN cDNA 9430079G20 gene
Gm29762 3 138577299 to 138578190 891 - pseudogene predicted gene, 29762
Gm43726 3 138579787 to 138580561 774 - pseudogene predicted gene 43726
Gm9415 3 138601132 to 138602452 1320 + pseudogene predicted gene 9415
Gm6057 3 138604318 to 138604984 666 - pseudogene predicted gene 6057
Gm43723 3 138643756 to 138643944 188 - pseudogene predicted gene 43723
Cpgi13877 3 138643944 to 138644280 336 CpG island CpG island 13877
4930425O10Rik 3 138711535 to 138726984 15449 - lincRNA gene RIKEN cDNA 4930425O10 gene
Cpgi13878 3 138726846 to 138727130 284 CpG island CpG island 13878
Tssr32002 3 138733490 to 138733514 24 + TSS region transcription start site region 32002
Cpgi13879 3 138741714 to 138743591 1877 CpG island CpG island 13879
Tspan5 3 138742208 to 138904433 162225 + protein coding gene tetraspanin 5
Tssr32003 3 138742228 to 138742322 94 + TSS region transcription start site region 32003
Tssr32004 3 138742323 to 138742332 9 + TSS region transcription start site region 32004
Tssr32005 3 138744267 to 138744271 4 + TSS region transcription start site region 32005
Tssr32006 3 138745877 to 138745889 12 + TSS region transcription start site region 32006
Tssr32007 3 138756592 to 138756595 3 + TSS region transcription start site region 32007
Tssr32008 3 138758122 to 138758137 15 + TSS region transcription start site region 32008
Tssr32009 3 138758434 to 138758460 26 + TSS region transcription start site region 32009
D3Mit194 3 138766489 to 138766631 142 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 194
Tssr32010 3 138783345 to 138783346 1 + TSS region transcription start site region 32010
Tssr1061 3 138785504 to 138785507 3 + TSS region transcription start site region 1061
Tssr32011 3 138793340 to 138793362 22 + TSS region transcription start site region 32011
Tssr32012 3 138804521 to 138804530 9 + TSS region transcription start site region 32012
Tssr32013 3 138813518 to 138813543 25 + TSS region transcription start site region 32013
Gm16060 3 138828685 to 138829162 477 - pseudogene predicted pseudogene 16060
Tssr32014 3 138860489 to 138860506 17 + TSS region transcription start site region 32014
Tssr1062 3 138860517 to 138860527 10 + TSS region transcription start site region 1062
Tssr32015 3 138877337 to 138877345 8 + TSS region transcription start site region 32015
Tssr32016 3 138902474 to 138902485 11 + TSS region transcription start site region 32016
Tssr32017 3 138903001 to 138903012 11 + TSS region transcription start site region 32017
Tssr32018 3 138903094 to 138903114 20 + TSS region transcription start site region 32018
Tssr32019 3 138903149 to 138903164 15 + TSS region transcription start site region 32019
Tssr32020 3 138903175 to 138903187 12 + TSS region transcription start site region 32020
Tssr32021 3 138903260 to 138903265 5 + TSS region transcription start site region 32021
Cpgi13880 3 138903936 to 138904212 276 CpG island CpG island 13880
Rap1gds1 3 138925902 to 139075201 149299 - protein coding gene RAP1, GTP-GDP dissociation stimulator 1
Gm18381 3 138936459 to 138939026 2567 - pseudogene predicted gene, 18381
Tssr35901 3 138975381 to 138975393 12 - TSS region transcription start site region 35901
Gm43162 3 138976312 to 138978081 1769 - unclassified gene predicted gene 43162
Tssr35902 3 138982779 to 138982785 6 - TSS region transcription start site region 35902
Tssr35903 3 139002282 to 139002303 21 - TSS region transcription start site region 35903
Tssr35904 3 139002368 to 139002379 11 - TSS region transcription start site region 35904
Tssr35905 3 139019611 to 139019613 2 - TSS region transcription start site region 35905
E030024I16Rik 3 139041455 to 139046187 4732 unclassified gene RIKEN cDNA E030024I16 gene
Cpgi13881 3 139074403 to 139076198 1795 CpG island CpG island 13881
Tssr35906 3 139075098 to 139075109 11 - TSS region transcription start site region 35906
Tssr35907 3 139075116 to 139075132 16 - TSS region transcription start site region 35907
Tssr35908 3 139075133 to 139075173 40 - TSS region transcription start site region 35908
Tssr35909 3 139075178 to 139075253 75 - TSS region transcription start site region 35909
Tssr35910 3 139075309 to 139075319 10 - TSS region transcription start site region 35910
Tssr32022 3 139075497 to 139075507 10 + TSS region transcription start site region 32022
Gm4862 3 139128334 to 139128771 437 - pseudogene predicted gene 4862
D3Jcs16 3 139173333 to 139173635 302 DNA segment DNA segment, Chr 3, John C. Schimenti 16
Cpgi13882 3 139205372 to 139206062 690 CpG island CpG island 13882
Tssr32023 3 139205644 to 139205655 11 + TSS region transcription start site region 32023
Tssr32024 3 139205658 to 139205684 26 + TSS region transcription start site region 32024
Stpg2 3 139205694 to 139710299 504605 + protein coding gene sperm tail PG rich repeat containing 2
Tssr32025 3 139205887 to 139205909 22 + TSS region transcription start site region 32025
Tssr32026 3 139205920 to 139205936 16 + TSS region transcription start site region 32026
Tssr1063 3 139274118 to 139274120 2 + TSS region transcription start site region 1063
Gm43163 3 139411795 to 139412236 441 + pseudogene predicted gene 43163
Gm24260 3 139417757 to 139417863 106 - snRNA gene predicted gene, 24260
D3Mit351 3 139599455 to 139599553 98 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 351