MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 3:138543756-138743944

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19 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Eif4e	3	138526191 to 138559696	33505	+	protein coding gene	eukaryotic translation initiation factor 4E
Tssr31998	3	138548983 to 138549015	32	+	TSS region	transcription start site region 31998
Tssr31999	3	138550571 to 138550616	45	+	TSS region	transcription start site region 31999
Tssr32000	3	138550617 to 138550627	10	+	TSS region	transcription start site region 32000
Tssr32001	3	138550654 to 138550677	23	+	TSS region	transcription start site region 32001
9430079G20Rik	3	138558418 to 138559693	1275		unclassified gene	RIKEN cDNA 9430079G20 gene
Gm29762	3	138577299 to 138578190	891	-	pseudogene	predicted gene, 29762
Gm43726	3	138579787 to 138580561	774	-	pseudogene	predicted gene 43726
Gm9415	3	138601132 to 138602452	1320	+	pseudogene	predicted gene 9415
Gm6057	3	138604318 to 138604984	666	-	pseudogene	predicted gene 6057
Gm43723	3	138643756 to 138643944	188	-	pseudogene	predicted gene 43723
Cpgi13877	3	138643944 to 138644280	336		CpG island	CpG island 13877
4930425O10Rik	3	138711535 to 138726984	15449	-	lincRNA gene	RIKEN cDNA 4930425O10 gene
Cpgi13878	3	138726846 to 138727130	284		CpG island	CpG island 13878
Tssr32002	3	138733490 to 138733514	24	+	TSS region	transcription start site region 32002
Cpgi13879	3	138741714 to 138743591	1877		CpG island	CpG island 13879
Tspan5	3	138742208 to 138904433	162225	+	protein coding gene	tetraspanin 5
Tssr32003	3	138742228 to 138742322	94	+	TSS region	transcription start site region 32003
Tssr32004	3	138742323 to 138742332	9	+	TSS region	transcription start site region 32004