Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:138513756-138773944

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr31989 3 138526174 to 138526178 4 + TSS region transcription start site region 31989
Eif4e 3 138526191 to 138559696 33505 + protein coding gene eukaryotic translation initiation factor 4E
Cpgi13876 3 138526204 to 138528405 2201 CpG island CpG island 13876
Tssr35898 3 138526227 to 138526254 27 - TSS region transcription start site region 35898
Tssr31990 3 138526418 to 138526436 18 + TSS region transcription start site region 31990
Mir1956 3 138526421 to 138526485 64 + miRNA gene microRNA 1956
Tssr31991 3 138526438 to 138526458 20 + TSS region transcription start site region 31991
Tssr31992 3 138526475 to 138526521 46 + TSS region transcription start site region 31992
Tssr31993 3 138526523 to 138526551 28 + TSS region transcription start site region 31993
Tssr31994 3 138526562 to 138526582 20 + TSS region transcription start site region 31994
Tssr31995 3 138526620 to 138526631 11 + TSS region transcription start site region 31995
Tssr35899 3 138526943 to 138526963 20 - TSS region transcription start site region 35899
Tssr35900 3 138526967 to 138527002 35 - TSS region transcription start site region 35900
Tssr31996 3 138527244 to 138527289 45 + TSS region transcription start site region 31996
Tssr31997 3 138528594 to 138528598 4 + TSS region transcription start site region 31997
D230015J17Rik 3 138540314 to 138543520 3206 unclassified gene RIKEN cDNA D230015J17 gene
Tssr31998 3 138548983 to 138549015 32 + TSS region transcription start site region 31998
Tssr31999 3 138550571 to 138550616 45 + TSS region transcription start site region 31999
Tssr32000 3 138550617 to 138550627 10 + TSS region transcription start site region 32000
Tssr32001 3 138550654 to 138550677 23 + TSS region transcription start site region 32001
9430079G20Rik 3 138558418 to 138559693 1275 unclassified gene RIKEN cDNA 9430079G20 gene
Gm29762 3 138577299 to 138578190 891 - pseudogene predicted gene, 29762
Gm43726 3 138579787 to 138580561 774 - pseudogene predicted gene 43726
Gm9415 3 138601132 to 138602452 1320 + pseudogene predicted gene 9415
Gm6057 3 138604318 to 138604984 666 - pseudogene predicted gene 6057
Gm43723 3 138643756 to 138643944 188 - pseudogene predicted gene 43723
Cpgi13877 3 138643944 to 138644280 336 CpG island CpG island 13877
4930425O10Rik 3 138711535 to 138726984 15449 - lincRNA gene RIKEN cDNA 4930425O10 gene
Cpgi13878 3 138726846 to 138727130 284 CpG island CpG island 13878
Tssr32002 3 138733490 to 138733514 24 + TSS region transcription start site region 32002
Cpgi13879 3 138741714 to 138743591 1877 CpG island CpG island 13879
Tspan5 3 138742208 to 138904433 162225 + protein coding gene tetraspanin 5
Tssr32003 3 138742228 to 138742322 94 + TSS region transcription start site region 32003
Tssr32004 3 138742323 to 138742332 9 + TSS region transcription start site region 32004
Tssr32005 3 138744267 to 138744271 4 + TSS region transcription start site region 32005
Tssr32006 3 138745877 to 138745889 12 + TSS region transcription start site region 32006
Tssr32007 3 138756592 to 138756595 3 + TSS region transcription start site region 32007
Tssr32008 3 138758122 to 138758137 15 + TSS region transcription start site region 32008
Tssr32009 3 138758434 to 138758460 26 + TSS region transcription start site region 32009
D3Mit194 3 138766489 to 138766631 142 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 194