Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:138311191-138774696

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr31974 3 138313279 to 138313293 14 + TSS region transcription start site region 31974
Adh6a 3 138313286 to 138331134 17848 + protein coding gene alcohol dehydrogenase 6A (class V)
Cpgi13873 3 138325068 to 138325220 152 CpG island CpG island 13873
Adh6b 3 138341775 to 138358861 17086 + protein coding gene alcohol dehydrogenase 6B (class V)
Tssr31975 3 138341933 to 138341938 5 + TSS region transcription start site region 31975
Tssr31976 3 138341947 to 138341961 14 + TSS region transcription start site region 31976
Tssr31977 3 138341968 to 138341981 13 + TSS region transcription start site region 31977
Tssr31978 3 138342284 to 138342300 16 + TSS region transcription start site region 31978
Tssr31979 3 138342792 to 138342811 19 + TSS region transcription start site region 31979
Gm23467 3 138343138 to 138343296 158 + snRNA gene predicted gene, 23467
Adh6-ps1 3 138374121 to 138388291 14170 + pseudogene alcohol dehydrogenase 6 (class V), pseudogene 1
Tssr31980 3 138374146 to 138374163 17 + TSS region transcription start site region 31980
Tssr31981 3 138415460 to 138415468 8 + TSS region transcription start site region 31981
Tssr31982 3 138415484 to 138415510 26 + TSS region transcription start site region 31982
Adh4 3 138415497 to 138430892 15395 + protein coding gene alcohol dehydrogenase 4 (class II), pi polypeptide
Tssr31983 3 138432457 to 138432460 3 + TSS region transcription start site region 31983
Cpgi13874 3 138442543 to 138443606 1063 CpG island CpG island 13874
Tssr31984 3 138443085 to 138443176 91 + TSS region transcription start site region 31984
Adh5 3 138443093 to 138455499 12406 + protein coding gene alcohol dehydrogenase 5 (class III), chi polypeptide
Tssr31985 3 138451455 to 138451468 13 + TSS region transcription start site region 31985
Metap1 3 138458960 to 138489382 30422 - protein coding gene methionyl aminopeptidase 1
Tssr35892 3 138460249 to 138460254 5 - TSS region transcription start site region 35892
Tssr35893 3 138472251 to 138472277 26 - TSS region transcription start site region 35893
Gm32553 3 138484410 to 138487463 3053 - lncRNA gene predicted gene, 32553
Cpgi13875 3 138488810 to 138489848 1038 CpG island CpG island 13875
Tssr31986 3 138488869 to 138488881 12 + TSS region transcription start site region 31986
Tssr31987 3 138488891 to 138488902 11 + TSS region transcription start site region 31987
Tssr35894 3 138489037 to 138489044 7 - TSS region transcription start site region 35894
Tssr35895 3 138489372 to 138489411 39 - TSS region transcription start site region 35895
Tssr31988 3 138489773 to 138489785 12 + TSS region transcription start site region 31988
Tssr35896 3 138493767 to 138493787 20 - TSS region transcription start site region 35896
Tssr35897 3 138493812 to 138493851 39 - TSS region transcription start site region 35897
Gm43724 3 138495868 to 138496093 225 - pseudogene predicted gene 43724
Gm43725 3 138503844 to 138504212 368 - pseudogene predicted gene 43725
Tssr31989 3 138526174 to 138526178 4 + TSS region transcription start site region 31989
Eif4e 3 138526191 to 138559696 33505 + protein coding gene eukaryotic translation initiation factor 4E
Cpgi13876 3 138526204 to 138528405 2201 CpG island CpG island 13876
Tssr35898 3 138526227 to 138526254 27 - TSS region transcription start site region 35898
Tssr31990 3 138526418 to 138526436 18 + TSS region transcription start site region 31990
Mir1956 3 138526421 to 138526485 64 + miRNA gene microRNA 1956
Tssr31991 3 138526438 to 138526458 20 + TSS region transcription start site region 31991
Tssr31992 3 138526475 to 138526521 46 + TSS region transcription start site region 31992
Tssr31993 3 138526523 to 138526551 28 + TSS region transcription start site region 31993
Tssr31994 3 138526562 to 138526582 20 + TSS region transcription start site region 31994
Tssr31995 3 138526620 to 138526631 11 + TSS region transcription start site region 31995
Tssr35899 3 138526943 to 138526963 20 - TSS region transcription start site region 35899
Tssr35900 3 138526967 to 138527002 35 - TSS region transcription start site region 35900
Tssr31996 3 138527244 to 138527289 45 + TSS region transcription start site region 31996
Tssr31997 3 138528594 to 138528598 4 + TSS region transcription start site region 31997
D230015J17Rik 3 138540314 to 138543520 3206 unclassified gene RIKEN cDNA D230015J17 gene
Tssr31998 3 138548983 to 138549015 32 + TSS region transcription start site region 31998
Tssr31999 3 138550571 to 138550616 45 + TSS region transcription start site region 31999
Tssr32000 3 138550617 to 138550627 10 + TSS region transcription start site region 32000
Tssr32001 3 138550654 to 138550677 23 + TSS region transcription start site region 32001
9430079G20Rik 3 138558418 to 138559693 1275 unclassified gene RIKEN cDNA 9430079G20 gene
Gm29762 3 138577299 to 138578190 891 - pseudogene predicted gene, 29762
Gm43726 3 138579787 to 138580561 774 - pseudogene predicted gene 43726
Gm9415 3 138601132 to 138602452 1320 + pseudogene predicted gene 9415
Gm6057 3 138604318 to 138604984 666 - pseudogene predicted gene 6057
Gm43723 3 138643756 to 138643944 188 - pseudogene predicted gene 43723
Cpgi13877 3 138643944 to 138644280 336 CpG island CpG island 13877
4930425O10Rik 3 138711535 to 138726984 15449 - lincRNA gene RIKEN cDNA 4930425O10 gene
Cpgi13878 3 138726846 to 138727130 284 CpG island CpG island 13878
Tssr32002 3 138733490 to 138733514 24 + TSS region transcription start site region 32002
Cpgi13879 3 138741714 to 138743591 1877 CpG island CpG island 13879
Tspan5 3 138742208 to 138904433 162225 + protein coding gene tetraspanin 5
Tssr32003 3 138742228 to 138742322 94 + TSS region transcription start site region 32003
Tssr32004 3 138742323 to 138742332 9 + TSS region transcription start site region 32004
Tssr32005 3 138744267 to 138744271 4 + TSS region transcription start site region 32005
Tssr32006 3 138745877 to 138745889 12 + TSS region transcription start site region 32006
Tssr32007 3 138756592 to 138756595 3 + TSS region transcription start site region 32007
Tssr32008 3 138758122 to 138758137 15 + TSS region transcription start site region 32008
Tssr32009 3 138758434 to 138758460 26 + TSS region transcription start site region 32009
D3Mit194 3 138766489 to 138766631 142 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 194