Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:138058812-138928851

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165 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm5105 3 138048761 to 138067388 18627 - protein coding gene predicted gene 5105
Tssr31936 3 138061915 to 138061920 5 + TSS region transcription start site region 31936
1110002E22Rik 3 138065052 to 138081506 16454 + protein coding gene RIKEN cDNA 1110002E22 gene
Tssr31937 3 138065057 to 138065078 21 + TSS region transcription start site region 31937
Tssr31938 3 138065143 to 138065156 13 + TSS region transcription start site region 31938
Tssr31939 3 138065169 to 138065197 28 + TSS region transcription start site region 31939
Alpq6 3 138066317 to 138066317 0 QTL alcohol preference QTL 6
Tssr31940 3 138066625 to 138066648 23 + TSS region transcription start site region 31940
Tssr31941 3 138066685 to 138066704 19 + TSS region transcription start site region 31941
Mttp 3 138089855 to 138143461 53606 - protein coding gene microsomal triglyceride transfer protein
Tssr35872 3 138090230 to 138090243 13 - TSS region transcription start site region 35872
Tssr35873 3 138090324 to 138090333 9 - TSS region transcription start site region 35873
Tssr35874 3 138091039 to 138091070 31 - TSS region transcription start site region 35874
Tssr35875 3 138091131 to 138091155 24 - TSS region transcription start site region 35875
Gm43691 3 138103916 to 138114717 10801 + antisense lncRNA gene predicted gene 43691
Tssr31942 3 138107239 to 138107273 34 + TSS region transcription start site region 31942
Tssr31943 3 138109064 to 138109092 28 + TSS region transcription start site region 31943
Tssr1060 3 138112469 to 138112471 2 + TSS region transcription start site region 1060
Tssr35876 3 138114140 to 138114159 19 - TSS region transcription start site region 35876
Tssr35877 3 138131332 to 138131355 23 - TSS region transcription start site region 35877
Tssr35878 3 138131356 to 138131381 25 - TSS region transcription start site region 35878
Tssr35879 3 138131389 to 138131400 11 - TSS region transcription start site region 35879
Cpgi13871 3 138143263 to 138144189 926 CpG island CpG island 13871
Tssr35880 3 138143352 to 138143396 44 - TSS region transcription start site region 35880
Tssr31944 3 138143429 to 138143477 48 + TSS region transcription start site region 31944
Tssr31945 3 138143483 to 138143496 13 + TSS region transcription start site region 31945
Trmt10a 3 138143517 to 138159821 16304 + protein coding gene tRNA methyltransferase 10A
Tssr35881 3 138143688 to 138143713 25 - TSS region transcription start site region 35881
Tssr35882 3 138143717 to 138143732 15 - TSS region transcription start site region 35882
Tssr31946 3 138143822 to 138143843 21 + TSS region transcription start site region 31946
Tssr31947 3 138143846 to 138143886 40 + TSS region transcription start site region 31947
Tssr31948 3 138143888 to 138143919 31 + TSS region transcription start site region 31948
Tssr31949 3 138143922 to 138143937 15 + TSS region transcription start site region 31949
4930579F01Rik 3 138164078 to 138193825 29747 - protein coding gene RIKEN cDNA 4930579F01 gene
Cpgi13872 3 138186040 to 138186472 432 CpG island CpG island 13872
Tssr35883 3 138186700 to 138186732 32 - TSS region transcription start site region 35883
Tssr35884 3 138186741 to 138186748 7 - TSS region transcription start site region 35884
Tssr35885 3 138193824 to 138193851 27 - TSS region transcription start site region 35885
0610031O16Rik 3 138210717 to 138239663 28946 - antisense lncRNA gene RIKEN cDNA 0610031O16 gene
D3Ertd425e 3 138212167 to 138212373 206 DNA segment DNA segment, Chr 3, ERATO Doi 425, expressed
Adh7 3 138217760 to 138233382 15622 + protein coding gene alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide
Tssr31950 3 138217762 to 138217777 15 + TSS region transcription start site region 31950
Tssr31951 3 138217789 to 138217803 14 + TSS region transcription start site region 31951
Tssr31952 3 138217814 to 138217828 14 + TSS region transcription start site region 31952
Tssr31953 3 138217838 to 138217847 9 + TSS region transcription start site region 31953
Tssr35886 3 138239583 to 138239605 22 - TSS region transcription start site region 35886
Tssr35887 3 138239627 to 138239645 18 - TSS region transcription start site region 35887
Tssr35888 3 138239658 to 138239665 7 - TSS region transcription start site region 35888
Tssr35889 3 138239670 to 138239685 15 - TSS region transcription start site region 35889
Gm40156 3 138261047 to 138274981 13934 + lncRNA gene predicted gene, 40156
Tssr31954 3 138277489 to 138277495 6 + TSS region transcription start site region 31954
Tssr31955 3 138277642 to 138277659 17 + TSS region transcription start site region 31955
Adh1 3 138277645 to 138290691 13046 + protein coding gene alcohol dehydrogenase 1 (class I)
Tssr31956 3 138277748 to 138277757 9 + TSS region transcription start site region 31956
Tssr31957 3 138277765 to 138277777 12 + TSS region transcription start site region 31957
Tssr31958 3 138279784 to 138279808 24 + TSS region transcription start site region 31958
Tssr31959 3 138280405 to 138280434 29 + TSS region transcription start site region 31959
Tssr31960 3 138280457 to 138280470 13 + TSS region transcription start site region 31960
Tssr31961 3 138282626 to 138282646 20 + TSS region transcription start site region 31961
Tssr35890 3 138282723 to 138282743 20 - TSS region transcription start site region 35890
Tssr31962 3 138282765 to 138282776 11 + TSS region transcription start site region 31962
Tssr31963 3 138282785 to 138282805 20 + TSS region transcription start site region 31963
Tssr31964 3 138285274 to 138285309 35 + TSS region transcription start site region 31964
Tssr31965 3 138286854 to 138286872 18 + TSS region transcription start site region 31965
Tssr31966 3 138286904 to 138286926 22 + TSS region transcription start site region 31966
Tssr31967 3 138288734 to 138288777 43 + TSS region transcription start site region 31967
Tssr31968 3 138288780 to 138288825 45 + TSS region transcription start site region 31968
Tssr31969 3 138288833 to 138288840 7 + TSS region transcription start site region 31969
Tssr31970 3 138288844 to 138288856 12 + TSS region transcription start site region 31970
Tssr31971 3 138289798 to 138289818 20 + TSS region transcription start site region 31971
Tssr35891 3 138289866 to 138289883 17 - TSS region transcription start site region 35891
Tssr31972 3 138290568 to 138290579 11 + TSS region transcription start site region 31972
Tssr31973 3 138290594 to 138290630 36 + TSS region transcription start site region 31973
Gm16559 3 138302493 to 138307031 4538 - antisense lncRNA gene predicted gene 16559
Tssr31974 3 138313279 to 138313293 14 + TSS region transcription start site region 31974
Adh6a 3 138313286 to 138331134 17848 + protein coding gene alcohol dehydrogenase 6A (class V)
Cpgi13873 3 138325068 to 138325220 152 CpG island CpG island 13873
Adh6b 3 138341775 to 138358861 17086 + protein coding gene alcohol dehydrogenase 6B (class V)
Tssr31975 3 138341933 to 138341938 5 + TSS region transcription start site region 31975
Tssr31976 3 138341947 to 138341961 14 + TSS region transcription start site region 31976
Tssr31977 3 138341968 to 138341981 13 + TSS region transcription start site region 31977
Tssr31978 3 138342284 to 138342300 16 + TSS region transcription start site region 31978
Tssr31979 3 138342792 to 138342811 19 + TSS region transcription start site region 31979
Gm23467 3 138343138 to 138343296 158 + snRNA gene predicted gene, 23467
Adh6-ps1 3 138374121 to 138388291 14170 + pseudogene alcohol dehydrogenase 6 (class V), pseudogene 1
Tssr31980 3 138374146 to 138374163 17 + TSS region transcription start site region 31980
Tssr31981 3 138415460 to 138415468 8 + TSS region transcription start site region 31981
Tssr31982 3 138415484 to 138415510 26 + TSS region transcription start site region 31982
Adh4 3 138415497 to 138430892 15395 + protein coding gene alcohol dehydrogenase 4 (class II), pi polypeptide
Tssr31983 3 138432457 to 138432460 3 + TSS region transcription start site region 31983
Cpgi13874 3 138442543 to 138443606 1063 CpG island CpG island 13874
Tssr31984 3 138443085 to 138443176 91 + TSS region transcription start site region 31984
Adh5 3 138443093 to 138455499 12406 + protein coding gene alcohol dehydrogenase 5 (class III), chi polypeptide
Tssr31985 3 138451455 to 138451468 13 + TSS region transcription start site region 31985
Metap1 3 138458960 to 138489382 30422 - protein coding gene methionyl aminopeptidase 1
Tssr35892 3 138460249 to 138460254 5 - TSS region transcription start site region 35892
Tssr35893 3 138472251 to 138472277 26 - TSS region transcription start site region 35893
Gm32553 3 138484410 to 138487463 3053 - lncRNA gene predicted gene, 32553
Cpgi13875 3 138488810 to 138489848 1038 CpG island CpG island 13875
Tssr31986 3 138488869 to 138488881 12 + TSS region transcription start site region 31986
Tssr31987 3 138488891 to 138488902 11 + TSS region transcription start site region 31987
Tssr35894 3 138489037 to 138489044 7 - TSS region transcription start site region 35894
Tssr35895 3 138489372 to 138489411 39 - TSS region transcription start site region 35895
Tssr31988 3 138489773 to 138489785 12 + TSS region transcription start site region 31988
Tssr35896 3 138493767 to 138493787 20 - TSS region transcription start site region 35896
Tssr35897 3 138493812 to 138493851 39 - TSS region transcription start site region 35897
Gm43724 3 138495868 to 138496093 225 - pseudogene predicted gene 43724
Gm43725 3 138503844 to 138504212 368 - pseudogene predicted gene 43725
Tssr31989 3 138526174 to 138526178 4 + TSS region transcription start site region 31989
Eif4e 3 138526191 to 138559696 33505 + protein coding gene eukaryotic translation initiation factor 4E
Cpgi13876 3 138526204 to 138528405 2201 CpG island CpG island 13876
Tssr35898 3 138526227 to 138526254 27 - TSS region transcription start site region 35898
Tssr31990 3 138526418 to 138526436 18 + TSS region transcription start site region 31990
Mir1956 3 138526421 to 138526485 64 + miRNA gene microRNA 1956
Tssr31991 3 138526438 to 138526458 20 + TSS region transcription start site region 31991
Tssr31992 3 138526475 to 138526521 46 + TSS region transcription start site region 31992
Tssr31993 3 138526523 to 138526551 28 + TSS region transcription start site region 31993
Tssr31994 3 138526562 to 138526582 20 + TSS region transcription start site region 31994
Tssr31995 3 138526620 to 138526631 11 + TSS region transcription start site region 31995
Tssr35899 3 138526943 to 138526963 20 - TSS region transcription start site region 35899
Tssr35900 3 138526967 to 138527002 35 - TSS region transcription start site region 35900
Tssr31996 3 138527244 to 138527289 45 + TSS region transcription start site region 31996
Tssr31997 3 138528594 to 138528598 4 + TSS region transcription start site region 31997
D230015J17Rik 3 138540314 to 138543520 3206 unclassified gene RIKEN cDNA D230015J17 gene
Tssr31998 3 138548983 to 138549015 32 + TSS region transcription start site region 31998
Tssr31999 3 138550571 to 138550616 45 + TSS region transcription start site region 31999
Tssr32000 3 138550617 to 138550627 10 + TSS region transcription start site region 32000
Tssr32001 3 138550654 to 138550677 23 + TSS region transcription start site region 32001
9430079G20Rik 3 138558418 to 138559693 1275 unclassified gene RIKEN cDNA 9430079G20 gene
Gm29762 3 138577299 to 138578190 891 - pseudogene predicted gene, 29762
Gm43726 3 138579787 to 138580561 774 - pseudogene predicted gene 43726
Gm9415 3 138601132 to 138602452 1320 + pseudogene predicted gene 9415
Gm6057 3 138604318 to 138604984 666 - pseudogene predicted gene 6057
Gm43723 3 138643756 to 138643944 188 - pseudogene predicted gene 43723
Cpgi13877 3 138643944 to 138644280 336 CpG island CpG island 13877
4930425O10Rik 3 138711535 to 138726984 15449 - lincRNA gene RIKEN cDNA 4930425O10 gene
Cpgi13878 3 138726846 to 138727130 284 CpG island CpG island 13878
Tssr32002 3 138733490 to 138733514 24 + TSS region transcription start site region 32002
Cpgi13879 3 138741714 to 138743591 1877 CpG island CpG island 13879
Tspan5 3 138742208 to 138904433 162225 + protein coding gene tetraspanin 5
Tssr32003 3 138742228 to 138742322 94 + TSS region transcription start site region 32003
Tssr32004 3 138742323 to 138742332 9 + TSS region transcription start site region 32004
Tssr32005 3 138744267 to 138744271 4 + TSS region transcription start site region 32005
Tssr32006 3 138745877 to 138745889 12 + TSS region transcription start site region 32006
Tssr32007 3 138756592 to 138756595 3 + TSS region transcription start site region 32007
Tssr32008 3 138758122 to 138758137 15 + TSS region transcription start site region 32008
Tssr32009 3 138758434 to 138758460 26 + TSS region transcription start site region 32009
D3Mit194 3 138766489 to 138766631 142 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 194
Tssr32010 3 138783345 to 138783346 1 + TSS region transcription start site region 32010
Tssr1061 3 138785504 to 138785507 3 + TSS region transcription start site region 1061
Tssr32011 3 138793340 to 138793362 22 + TSS region transcription start site region 32011
Tssr32012 3 138804521 to 138804530 9 + TSS region transcription start site region 32012
Tssr32013 3 138813518 to 138813543 25 + TSS region transcription start site region 32013
Gm16060 3 138828685 to 138829162 477 - pseudogene predicted pseudogene 16060
Tssr32014 3 138860489 to 138860506 17 + TSS region transcription start site region 32014
Tssr1062 3 138860517 to 138860527 10 + TSS region transcription start site region 1062
Tssr32015 3 138877337 to 138877345 8 + TSS region transcription start site region 32015
Tssr32016 3 138902474 to 138902485 11 + TSS region transcription start site region 32016
Tssr32017 3 138903001 to 138903012 11 + TSS region transcription start site region 32017
Tssr32018 3 138903094 to 138903114 20 + TSS region transcription start site region 32018
Tssr32019 3 138903149 to 138903164 15 + TSS region transcription start site region 32019
Tssr32020 3 138903175 to 138903187 12 + TSS region transcription start site region 32020
Tssr32021 3 138903260 to 138903265 5 + TSS region transcription start site region 32021
Cpgi13880 3 138903936 to 138904212 276 CpG island CpG island 13880
Rap1gds1 3 138925902 to 139075201 149299 - protein coding gene RAP1, GTP-GDP dissociation stimulator 1