Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:137751483-138211494

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104 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi13865 3 137752972 to 137753129 157 CpG island CpG island 13865
Tssr31909 3 137780409 to 137780450 41 + TSS region transcription start site region 31909
Mir6380 3 137783535 to 137783615 80 - miRNA gene microRNA 6380
Gm31678 3 137795269 to 137802639 7370 - lincRNA gene predicted gene, 31678
Tssr31910 3 137833915 to 137833929 14 + TSS region transcription start site region 31910
Tssr31911 3 137838494 to 137838499 5 + TSS region transcription start site region 31911
Gm43403 3 137863704 to 137864399 695 - antisense lncRNA gene predicted gene 43403
Cpgi13866 3 137863968 to 137865828 1860 CpG island CpG island 13866
Tssr35855 3 137864317 to 137864331 14 - TSS region transcription start site region 35855
H2afz 3 137864487 to 137866922 2435 + protein coding gene H2A histone family, member Z
Tssr31912 3 137864503 to 137864525 22 + TSS region transcription start site region 31912
Tssr31913 3 137864535 to 137864564 29 + TSS region transcription start site region 31913
Tssr31914 3 137864573 to 137864591 18 + TSS region transcription start site region 31914
Tssr31915 3 137865059 to 137865121 62 + TSS region transcription start site region 31915
Tssr31916 3 137865868 to 137865871 3 + TSS region transcription start site region 31916
Tssr31917 3 137865900 to 137865938 38 + TSS region transcription start site region 31917
Cpgi13867 3 137867351 to 137868384 1033 CpG island CpG island 13867
Dnajb14 3 137867675 to 137916557 48882 + protein coding gene DnaJ heat shock protein family (Hsp40) member B14
Tssr31918 3 137867758 to 137867797 39 + TSS region transcription start site region 31918
Tssr31919 3 137867807 to 137867834 27 + TSS region transcription start site region 31919
Tssr31920 3 137867859 to 137867876 17 + TSS region transcription start site region 31920
Tssr31921 3 137867878 to 137867913 35 + TSS region transcription start site region 31921
Tssr31922 3 137867958 to 137867964 6 + TSS region transcription start site region 31922
Tssr31923 3 137868062 to 137868069 7 + TSS region transcription start site region 31923
Tssr31924 3 137868077 to 137868117 40 + TSS region transcription start site region 31924
Tssr31925 3 137868121 to 137868129 8 + TSS region transcription start site region 31925
Gm40155 3 137875925 to 137878126 2201 - antisense lncRNA gene predicted gene, 40155
Tssr35856 3 137878108 to 137878120 12 - TSS region transcription start site region 35856
Tssr35857 3 137878123 to 137878134 11 - TSS region transcription start site region 35857
Tssr35858 3 137878139 to 137878146 7 - TSS region transcription start site region 35858
Tssr31926 3 137882662 to 137882665 3 + TSS region transcription start site region 31926
Tssr31927 3 137882813 to 137882820 7 + TSS region transcription start site region 31927
Gm43088 3 137897144 to 137899490 2346 + unclassified gene predicted gene 43088
Gm15460 3 137905009 to 137905399 390 + pseudogene predicted gene 15460
Tssr31928 3 137908463 to 137908479 16 + TSS region transcription start site region 31928
Tssr31929 3 137910670 to 137910683 13 + TSS region transcription start site region 31929
Gm25920 3 137912990 to 137913088 98 - snRNA gene predicted gene, 25920
Tssr31930 3 137914934 to 137914947 13 + TSS region transcription start site region 31930
Gm43689 3 137918019 to 137918445 426 - lincRNA gene predicted gene 43689
Cpgi13868 3 137918380 to 137918886 506 CpG island CpG island 13868
Tssr35859 3 137918400 to 137918432 32 - TSS region transcription start site region 35859
Tssr31931 3 137918470 to 137918509 39 + TSS region transcription start site region 31931
Tssr31932 3 137918536 to 137918547 11 + TSS region transcription start site region 31932
Tssr31933 3 137918550 to 137918573 23 + TSS region transcription start site region 31933
Lamtor3 3 137918555 to 137928762 10207 + protein coding gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 3
Tssr31934 3 137918864 to 137918867 3 + TSS region transcription start site region 31934
Tssr35860 3 137919080 to 137919086 6 - TSS region transcription start site region 35860
Dapp1 3 137931007 to 137981545 50538 - protein coding gene dual adaptor for phosphotyrosine and 3-phosphoinositides 1
Cpgi13869 3 137954546 to 137954790 244 CpG island CpG island 13869
Tssr35861 3 137954728 to 137954736 8 - TSS region transcription start site region 35861
Tssr35862 3 137954739 to 137954758 19 - TSS region transcription start site region 35862
Tssr35863 3 137954774 to 137954775 1 - TSS region transcription start site region 35863
Tssr35864 3 137965992 to 137966001 9 - TSS region transcription start site region 35864
Tssr35865 3 137969636 to 137969640 4 - TSS region transcription start site region 35865
Tssr35866 3 137981483 to 137981494 11 - TSS region transcription start site region 35866
Tssr35867 3 137981505 to 137981522 17 - TSS region transcription start site region 35867
Tssr35868 3 137981523 to 137981542 19 - TSS region transcription start site region 35868
Tssr35869 3 137981548 to 137981564 16 - TSS region transcription start site region 35869
Cpgi13870 3 137982278 to 137982584 306 CpG island CpG island 13870
D3Ertd211e 3 137989076 to 137989285 209 DNA segment DNA segment, Chr 3, ERATO Doi 211, expressed
D3Mit111 3 137992889 to 137993054 165 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 111
Tssr35870 3 137997775 to 137997779 4 - TSS region transcription start site region 35870
Tssr31935 3 138000869 to 138000909 40 + TSS region transcription start site region 31935
Gm19708 3 138000939 to 138016044 15105 + lincRNA gene predicted gene, 19708
Tssr35871 3 138002705 to 138002724 19 - TSS region transcription start site region 35871
Gm5105 3 138048761 to 138067388 18627 - protein coding gene predicted gene 5105
Tssr31936 3 138061915 to 138061920 5 + TSS region transcription start site region 31936
1110002E22Rik 3 138065052 to 138081506 16454 + protein coding gene RIKEN cDNA 1110002E22 gene
Tssr31937 3 138065057 to 138065078 21 + TSS region transcription start site region 31937
Tssr31938 3 138065143 to 138065156 13 + TSS region transcription start site region 31938
Tssr31939 3 138065169 to 138065197 28 + TSS region transcription start site region 31939
Alpq6 3 138066317 to 138066317 0 QTL alcohol preference QTL 6
Tssr31940 3 138066625 to 138066648 23 + TSS region transcription start site region 31940
Tssr31941 3 138066685 to 138066704 19 + TSS region transcription start site region 31941
Mttp 3 138089855 to 138143461 53606 - protein coding gene microsomal triglyceride transfer protein
Tssr35872 3 138090230 to 138090243 13 - TSS region transcription start site region 35872
Tssr35873 3 138090324 to 138090333 9 - TSS region transcription start site region 35873
Tssr35874 3 138091039 to 138091070 31 - TSS region transcription start site region 35874
Tssr35875 3 138091131 to 138091155 24 - TSS region transcription start site region 35875
Gm43691 3 138103916 to 138114717 10801 + antisense lncRNA gene predicted gene 43691
Tssr31942 3 138107239 to 138107273 34 + TSS region transcription start site region 31942
Tssr31943 3 138109064 to 138109092 28 + TSS region transcription start site region 31943
Tssr1060 3 138112469 to 138112471 2 + TSS region transcription start site region 1060
Tssr35876 3 138114140 to 138114159 19 - TSS region transcription start site region 35876
Tssr35877 3 138131332 to 138131355 23 - TSS region transcription start site region 35877
Tssr35878 3 138131356 to 138131381 25 - TSS region transcription start site region 35878
Tssr35879 3 138131389 to 138131400 11 - TSS region transcription start site region 35879
Cpgi13871 3 138143263 to 138144189 926 CpG island CpG island 13871
Tssr35880 3 138143352 to 138143396 44 - TSS region transcription start site region 35880
Tssr31944 3 138143429 to 138143477 48 + TSS region transcription start site region 31944
Tssr31945 3 138143483 to 138143496 13 + TSS region transcription start site region 31945
Trmt10a 3 138143517 to 138159821 16304 + protein coding gene tRNA methyltransferase 10A
Tssr35881 3 138143688 to 138143713 25 - TSS region transcription start site region 35881
Tssr35882 3 138143717 to 138143732 15 - TSS region transcription start site region 35882
Tssr31946 3 138143822 to 138143843 21 + TSS region transcription start site region 31946
Tssr31947 3 138143846 to 138143886 40 + TSS region transcription start site region 31947
Tssr31948 3 138143888 to 138143919 31 + TSS region transcription start site region 31948
Tssr31949 3 138143922 to 138143937 15 + TSS region transcription start site region 31949
4930579F01Rik 3 138164078 to 138193825 29747 - protein coding gene RIKEN cDNA 4930579F01 gene
Cpgi13872 3 138186040 to 138186472 432 CpG island CpG island 13872
Tssr35883 3 138186700 to 138186732 32 - TSS region transcription start site region 35883
Tssr35884 3 138186741 to 138186748 7 - TSS region transcription start site region 35884
Tssr35885 3 138193824 to 138193851 27 - TSS region transcription start site region 35885
0610031O16Rik 3 138210717 to 138239663 28946 - antisense lncRNA gene RIKEN cDNA 0610031O16 gene